Connecting structure and function from organisms to molecules in small-animal symbioses through chemo-histo-tomography

Our understanding of metabolic interactions between small symbi-otic animals and bacteria or parasitic eukaryotes that reside within their bodies is extremely limited. This gap in knowledge originates from a methodological challenge, namely to connect histologi -cal changes in host tissues induced by beneficial and parasitic (micro)organisms to the underlying metabolites. We addressed this challenge and developed chemo-histo-tomography (CHEMHIST), a culture-independent approach to connect anatomic structure and metabolic function in millimeter-sized symbiotic animals. CHEMHIST combines chemical imaging of metabolites based on mass spectrom-etry imaging (MSI) and microanatomy-based micro-computed X-ray tomography (micro-CT) on the same animal. Both high-resolution MSI and micro-CT allowed us to correlate the distribution of metab-olites to the same animal's three-dimensional (3D) histology down to submicrometer resolutions. Our protocol is compatible with tissue-specific DNA sequencing and fluorescence in situ hybridiza-tion for the taxonomic identification and localization of the associ-ated micro(organisms). Building CHEMHIST upon in situ imaging, we sampled an earthworm from its natural habitat and created an in-teractive 3D model of its physical and chemical interactions with bacteria and parasitic nematodes in its tissues. Combining MSI and micro-CT, we present a methodological groundwork for connecting metabolic and anatomic phenotypes of small symbiotic animals that often represent keystone species for ecosystem functioning

3D-anatomy and systematics of cocculinid-like limpets (Gastropoda: Cocculiniformia): more data, some corrections, but still an enigma

New material and new methodologies substantially widen the anatomical knowledge on cocculinid limpets. We first provide 3D-anatomies of Fedikovella caymanensis and Teuthirostria cancellata based on serial sections. Both species differ in several major points (mainly the gill-type and several features of the alimentary tract) from typical cocculinids, accordingly they are classified in a new clade, Teuthirostriidae fam. nov. Specimens studied by McLean and Harasewych (LA County Mus Contrib Sci 453:1-33, 1995) under Fedikovella beanii probably represent another species new to science. Additional investigations of original (type) section series of Cocculina laevis Thiele, 1904 (type species of Paracocculina Haszprunar, 1987) and of Cocculina radiata Thiele, 1904 (type species of Coccocrater Haszprunar, 1987) imply some nomenclatorial revisions: Cocculina cervae Fleming, 1948 is designated as type species of Pedococculina gen. nov. Anatomical characters confirm the subsequent placement of Cocculina viminensis Rocchini, 1990 into Coccopigya Marshall, 1986, whereas the original generic status of the whale-fall inhabitant Cocculina craigsmithi McLean, 1992 is confirmed despite the unusual habitat. The latter species probably has symbiotic bacteria in the midgut gland;if so this might be due to the environmental and feeding conditions at whale cadavers or hydrothermal vents. Contrary to Lepetelloidea, the Cocculiniformia cannot be included in Vetigastropoda. Recent molecular data support a sistergroup relationship of Cocculiniformia with Neomphalida, and we add the phenotypic perspective on this so-called Neomphaliones-hypothesis. In particular, more phylogenomic data are needed to specify the position of Cocculinida among the rhipidoglossate Gastropoda

Can nanolites enhance eruption explosivity?

Degassing dynamics play a crucial role in controlling the explosivity of magma at erupting volcanoes. Degassing of magmatic water typically involves bubble nucleation and growth, which drive magma ascent. Crystals suspended in magma may influence both nucleation and growth of bubbles. Micron- to centimeter-sized crystals can cause heterogeneous bubble nucleation and facilitate bubble coalescence. Nanometer-scale crystalline phases, so-called “nanolites”, are an underreported phenomenon in erupting magma and could exert a primary control on the eruptive style of silicic volcanoes. Yet the influence of nanolites on degassing processes remains wholly uninvestigated. In order to test the influence of nanolites on bubble nucleation and growth dynamics, we use an experimental approach to document how nanolites can increase the bubble number density and affect growth kinetics in a degassing nanolite-bearing silicic magma. We then examine a compilation of these values from natural volcanic rocks from explosive eruptions leading to the inference that some very high naturally occurring bubble number densities could be associated with the presence of magmatic nanolites. Finally, using a numerical magma ascent model, we show that for reasonable starting conditions for silicic eruptions, an increase in the resulting bubble number density associated with nanolites could push an eruption that would otherwise be effusive into the conditions required for explosive behavior

Vesiculation and Quenching During Surtseyan Eruptions at Hunga Tonga-Hunga Ha'apai Volcano, Tonga

Surtseyan eruptions are shallow to emergent subaqueous explosive eruptions that owe much of their characteristic behavior to the interaction of magma with water. The difference in thermal properties between water and air affects the cooling and postfragmentation vesiculation processes in magma erupted into the water column. Here we study the vesiculation and cooling processes during the 2009 and 2014–2015 Surtseyan eruptions of Hunga Tonga‐Hunga Ha'apai volcano by combining 2‐D and 3‐D vesicle‐scale analyses of lapilli and bombs and numerical thermal modeling. Most of the lapilli and bombs show gradual textural variations from rim to core. The vesicle connectivity in the lapilli and bombs increases with vesicularity from fully isolated to completely connected and also increases from rim to core in transitional clasts. We interpret the gradual textural variations and the connectivity‐vesicularity relationships as the result of postfragmentation bubble growth and coalescence interrupted at different stages by quenching in water. The measured vesicle size distributions are bimodal with a population of small and large vesicles. We interpret this bimodality as the result of two nucleation events, one prefragmentation with the nucleation and growth of large bubbles and one postfragmentation with nucleation of small vesicles. We link the thermal model with the textural variations in the clasts—showing a dependence on particle size, Leidenfrost effect, and initial melt temperature. In particular, the cooling profiles in the bombs are consistent with the gradual textural variations from rim to core in the clasts, likely caused by variations in time available for vesiculation before quenching

Utopia documents: linking scholarly literature with research data

Motivation: In recent years, the gulf between the mass of accumulating-research data and the massive literature describing and analyzing those data has widened. The need for intelligent tools to bridge this gap, to rescue the knowledge being systematically isolated in literature and data silos, is now widely acknowledged

Effectively incorporating selected multimedia content into medical publications

Until fairly recently, medical publications have been handicapped by being restricted to non-electronic formats, effectively preventing the dissemination of complex audiovisual and three-dimensional data. However, authors and readers could significantly profit from advances in electronic publishing that permit the inclusion of multimedia content directly into an article. For the first time, the de facto gold standard for scientific publishing, the portable document format (PDF), is used here as a platform to embed a video and an audio sequence of patient data into a publication. Fully interactive three-dimensional models of a face and a schematic representation of a human brain are also part of this publication. We discuss the potential of this approach and its impact on the communication of scientific medical data, particularly with regard to electronic and open access publications. Finally, we emphasise how medical teaching can benefit from this new tool and comment on the future of medical publishing

Ontogenetic Development of Weberian Ossicles and Hearing Abilities in the African Bullhead Catfish

BACKGROUND: The weberian apparatus of otophysine fishes facilitates sound transmission from the swimbladder to the inner ear to increase hearing sensitivity. It has been of great interest to biologists since the 19(th) century. No studies, however, are available on the development of the weberian ossicles and its effect on the development of hearing in catfishes. METHODOLOGY/PRINCIPAL FINDINGS: We investigated the development of the weberian apparatus and auditory sensitivity in the catfish Lophiobagrus cyclurus. Specimens from 11.3 mm to 85.5 mm in standard length were studied. Morphology was assessed using sectioning, histology, and X-ray computed tomography, along with 3D reconstruction. Hearing thresholds were measured utilizing the auditory evoked potentials recording technique. Weberian ossicles and interossicular ligaments were fully developed in all stages investigated except in the smallest size group. In the smallest catfish, the intercalarium and the interossicular ligaments were still missing and the tripus was not yet fully developed. Smallest juveniles revealed lowest auditory sensitivity and were unable to detect frequencies higher than 2 or 3 kHz; sensitivity increased in larger specimens by up to 40 dB, and frequency detection up to 6 kHz. In the size groups capable of perceiving frequencies up to 6 kHz, larger individuals had better hearing abilities at low frequencies (0.05-2 kHz), whereas smaller individuals showed better hearing at the highest frequencies (4-6 kHz). CONCLUSIONS/SIGNIFICANCE: Our data indicate that the ability of otophysine fish to detect sounds at low levels and high frequencies largely depends on the development of the weberian apparatus. A significant increase in auditory sensitivity was observed as soon as all weberian ossicles and interossicular ligaments are present and the chain for transmitting sounds from the swimbladder to the inner ear is complete. This contrasts with findings in another otophysine, the zebrafish, where no threshold changes have been observed

The Potent Respiratory System of Osedax mucofloris (Siboglinidae, Annelida) - A Prerequisite for the Origin of Bone-Eating Osedax?

Members of the conspicuous bone-eating genus, Osedax, are widely distributed on whale falls in the Pacific and Atlantic Oceans. These gutless annelids contain endosymbiotic heterotrophic bacteria in a branching root system embedded in the bones of vertebrates, whereas a trunk and anterior palps extend into the surrounding water. The unique life style within a bone environment is challenged by the high bacterial activity on, and within, the bone matrix possibly causing O2 depletion, and build-up of potentially toxic sulphide. We measured the O2 distribution around embedded Osedax and showed that the bone microenvironment is anoxic. Morphological studies showed that ventilation mechanisms in Osedax are restricted to the anterior palps, which are optimized for high O2 uptake by possessing a large surface area, large surface to volume ratio, and short diffusion distances. The blood vascular system comprises large vessels in the trunk, which facilitate an ample supply of oxygenated blood from the anterior crown to a highly vascularised root structure. Respirometry studies of O. mucofloris showed a high O2 consumption that exceeded the average O2 consumption of a broad line of resting annelids without endosymbionts. We regard this combination of features of the respiratory system of O. mucofloris as an adaptation to their unique nutrition strategy with roots embedded in anoxic bones and elevated O2 demand due to aerobic heterotrophic endosymbionts