Population genetic structure and habitat connectivity for jaguar (Panthera onca) conservation in Central Belize

Background Connectivity among jaguar (Panthera onca) populations will ensure natural gene flow and the long-term survival of the species throughout its range. Jaguar conservation efforts have focused primarily on connecting suitable habitat in a broad-scale. Accelerated habitat reduction, human-wildlife conflict, limited funding, and the complexity of jaguar behaviour have proven challenging to maintain connectivity between populations effectively. Here, we used non-invasive genetic sampling and individual-based conservation genetic analyses to assess genetic diversity and levels of genetic connectivity between individuals in the Cockscomb Basin Wildlife Sanctuary and the Maya Forest Corridor. We used expert knowledge and scientific literature to develop models of landscape permeability based on circuit theory with fine-scale landscape features as ecosystem types, distance to human settlements and roads to predict the most probable jaguar movement across central Belize. Results We used 12 highly polymorphic microsatellite loci to identify 50 individual jaguars. We detected high levels of genetic diversity across loci (HE = 0.61, HO = 0.55, and NA = 9.33). Using Bayesian clustering and multivariate models to assess gene flow and genetic structure, we identified one single group of jaguars (K = 1). We identified critical areas for jaguar movement that fall outside the boundaries of current protected areas in central Belize. We detected two main areas of high landscape permeability in a stretch of approximately 18 km between Sittee River Forest Reserve and Manatee Forest Reserve that may increase functional connectivity and facilitate jaguar dispersal from and to Cockscomb Basin Wildlife Sanctuary. Our analysis provides important insights on fine-scale genetic and landscape connectivity of jaguars in central Belize, an area of conservation concern. Conclusions The results of our study demonstrate high levels of relatively recent gene flow for jaguars between two study sites in central Belize. Our landscape analysis detected corridors of expected jaguar movement between the Cockscomb Basin Wildlife Sanctuary and the Maya Forest Corridor. We highlight the importance of maintaining already established corridors and consolidating new areas that further promote jaguar movement across suitable habitat beyond the boundaries of currently protected areas. Continued conservation efforts within identified corridors will further maintain and increase genetic connectivity in central Belize

DNA methylation predicts age and provides insight into exceptional longevity of bats

This work was supported by a Paul G. Allen Frontiers Group grant to S.H., the University of Maryland, College of Computer, Mathematical and Natural Sciences to G.S.W., an Irish Research Council Consolidator Laureate Award to E.C.T., a UKRI Future Leaders Fellowship (MR/T021985/1) to S.C.V. and a Discovery Grant from the Natural Sciences and Engineering Research Council (NSERC) of Canada to P.A.F. S.C.V. and P.D. were supported by a Max Planck Research Group awarded to S.C.V. by the Max Planck Gesellschaft, and S.C.V. and E.Z.L. were supported by a Human Frontiers Science Program Grant (RGP0058/2016) awarded to S.C.V. L.J.G. was supported by an NSERC PGS-D scholarship.Exceptionally long-lived species, including many bats, rarely show overt signs of aging, making it difficult to determine why species differ in lifespan. Here, we use DNA methylation (DNAm) profiles from 712 known-age bats, representing 26 species, to identify epigenetic changes associated with age and longevity. We demonstrate that DNAm accurately predicts chronological age. Across species, longevity is negatively associated with the rate of DNAm change at age-associated sites. Furthermore, analysis of several bat genomes reveals that hypermethylated age- and longevity-associated sites are disproportionately located in promoter regions of key transcription factors (TF) and enriched for histone and chromatin features associated with transcriptional regulation. Predicted TF binding site motifs and enrichment analyses indicate that age-related methylation change is influenced by developmental processes, while longevity-related DNAm change is associated with innate immunity or tumorigenesis genes, suggesting that bat longevity results from augmented immune response and cancer suppression.Publisher PDFPeer reviewe

Scientists warning on the ecological effects of radioactive leaks on ecosystems

A nuclear leakage or tactical nuclear weapon use in a limited war could cause immense and long-lasting ecological consequences beyond the direct site of exposure. We call upon all scientists to communicate the importance of the environmental impacts of such an event to all life forms on Earth, including humankind. Changes to ecosystem structure and functioning and species extinctions would alter the biosphere for an unknown time frame. Radiation could trigger cascade effects in marine, atmospheric and terrestrial ecosystems of a magnitude far beyond human capabilities for mitigation or adaptation. Even a “tactical nuclear war” could alter planet Earth’s living boundaries, ending the current Anthropocene era

A conservation roadmap for the subterranean biome

The 15th UN Convention on Biological Diversity (CBD) (COP15) will be held in Kunming, China in October 2021. Historically, CBDs and other multilateral treaties have either alluded to or entirely overlooked the subterranean biome. A multilateral effort to robustly examine, monitor, and incorporate the subterranean biome into future conservation targets will enable the CBD to further improve the ecological effectiveness of protected areas by including groundwater resources, subterranean ecosystem services, and the profoundly endemic subsurface biodiversity. To this end, we proffer a conservation roadmap that embodies five conceptual areas: (1) science gaps and data management needs; (2) anthropogenic stressors; (3) socioeconomic analysis and conflict resolution; (4) environmental education; and (5) national policies and multilateral agreements.Peer reviewe

Robust evidence for bats as reservoir hosts is lacking in most African virus studies : a review and call to optimize sampling and conserve bats

DATA ACCESSIBILITY : Data used in this study are available from the Dryad Digital Repository: https://doi.org/10.5061/dryad.c866t1gcx [222]. Supplementary material is available online [223].Africa experiences frequent emerging disease outbreaks among humans, with bats often proposed as zoonotic pathogen hosts. We comprehensively reviewed virus–bat findings from papers published between 1978 and 2020 to evaluate the evidence that African bats are reservoir and/or bridging hosts for viruses that cause human disease. We present data from 162 papers (of 1322) with original findings on (1) numbers and species of bats sampled across bat families and the continent, (2) how bats were selected for study inclusion, (3) if bats were terminally sampled, (4) what types of ecological data, if any, were recorded and (5) which viruses were detected and with what methodology. We propose a scheme for evaluating presumed virus–host relationships by evidence type and quality, using the contrasting available evidence for Orthoebolavirus versus Orthomarburgvirus as an example. We review the wording in abstracts and discussions of all 162 papers, identifying key framing terms, how these refer to findings, and how they might contribute to people’s beliefs about bats. We discuss the impact of scientific research communication on public perception and emphasize the need for strategies that minimize human–bat conflict and support bat conservation. Finally, we make recommendations for best practices that will improve virological study metadata.Open access funding provided by the Max Planck Society. Bucknell University and, in part, by the National Institute of Allergy and Infectious Diseases of the National Institutes of Health (NIH); the German Academic Exchange Service; the German Research Foundation the Institut Universitaire de France; the South African Research Chair Initiative of the Department of Science and Innovation and administered by the National Research Foundation (NRF) of South Africa; in part, by NSF and National Geographic and Rolex grants.https://royalsocietypublishing.org/journal/rsblam2024Medical VirologyNon

The status of the world's land and marine mammals: diversity, threat, and knowledge

Knowledge of mammalian diversity is still surprisingly disparate, both regionally and taxonomically. Here, we present a comprehensive assessment of the conservation status and distribution of the world's mammals. Data, compiled by 1700+ experts, cover all 5487 species, including marine mammals. Global macroecological patterns are very different for land and marine species but suggest common mechanisms driving diversity and endemism across systems. Compared with land species, threat levels are higher among marine mammals, driven by different processes (accidental mortality and pollution, rather than habitat loss), and are spatially distinct (peaking in northern oceans, rather than in Southeast Asia). Marine mammals are also disproportionately poorly known. These data are made freely available to support further scientific developments and conservation action

Conservation relevance of bat caves for biodiversity and ecosystem services

All ecosystems are dotted by salient small natural features that not only characterize them but also significantly add to their biodiversity and functions. These small natural features are prominent but easily missed when ecosystems are described. Caves are one key example of this. Cave ecosystems are underrepresented in conservation planning and implementation around the world and have become mostly overlooked in conservation strategies overall. Caves contain high levels of biodiversity from fungi to invertebrates to vertebrates. This paper emphasizes bat caves as providers of ecosystem services to vast areas surrounding them, in the order of hundreds of thousands of square km just in North America. Their influence extends three-dimensionally via subterraneous water bodies and via the aerial nightly dispersal of the bats that provide a host of services from seed dispersal to pollination to pest control. The examples used focus primarily on free-tailed bats in North America, but the same principles apply to any other cave in the world with significant bat colonies. Caves enjoy protection, legal or actual, in some countries and not in others, and as a result many have suffered damage or been destroyed altogether. Common threats are vandalism, urbanization, and pollution. Many caves are attractive as ecotourism destinations and provide unique opportunities to educate the public about unexpected biodiversity values and ecosystem services. Inventorying caves poses challenges, but efforts are under way to assess caves in need of protection. Incipient cave protection strategies include legal and educational efforts, and management. Although illustrated with bat caves, given the importance of all caves and their precarious status, it is time to call the attention of decision makers about the urgent need to launch a worldwide cave conservation initiative

Multipurpose Reservoir Operation: a Multi-Scale Tradeoff Analysis between Hydropower Generation and Irrigated Agriculture

Reservoir operations often require balancing among several water uses. Despite the non-consumptive nature of hydropower, conflicts exist between irrigation and hydropower due to a demand seasonality mismatch. Hydropower operations are scheduled as part of a large-scale power grid, whereas irrigation decisions takes place at a smaller scale, most often the river basin. Balancing these water uses should involve a co-optimization at the power grid level, integrating all basins contributing hydropower to the grid. However, grid-wide co-optimization is not always possible due, for instance, to separate regulatory settings between water uses. For those cases, we propose a basin-wide co-optimization approach that integrates two decision scales-power grid and river basin- into a hydro-economic model. Water for irrigation is usually allocated by water rights or binding contracts, represented as constraints on grid-wide power operation models. We propose a water allocation scheme that integrates monthly marginal benefits of water for irrigation and hydropower at the basin level. Monthly water demand functions for irrigation are developed using an agricultural economic model, and marginal benefits of hydropower production are derived from a cost-minimization, grid-wide power scheduling model. Results for 50 inflow scenarios show that the proposed basin-wide co-optimization provides an economically sound operation. Total benefits from water use in the basin are on average 2.5% higher than those obtained under mandatory irrigation. Moreover, expected benefits under co-optimization are 5.4% and 1.8% higher for irrigated agriculture and hydropower, respectively, alleviating the conflicts between water uses in the basin