Explainable Exploration of the Interplay between HRV Features and EEG Local Connectivity Patterns in Dyslexia.

Heart Rate Variability (HRV) is a measure of the variation in time between successive heartbeats, reflecting the influence of the au- tonomic nervous system on the heart. It can provide insights into the bal- ance between sympathetic and parasympathetic activity. The relation- ship between autonomic nervous system function, specifically parasym- pathetic activity, and certain learning disorders, including dyslexia, is currently under study. In this paper, we propose the use of explain- able techniques to explore the relationships between HRV markers and local functional brain activity, estimated by cross-frequency coupling (CFC) from electroencephalography (EEG) signals recorded while audi- tory stimuli were applied to 7-year-old children. We analyze EEG data to examine the phase-to-phase brainwave coupling and use machine learn- ing tools such as XGBoost and Shapley values to reveal brain regions that most contribute to different HRV features, with a focus on parasympa- thetic activity. Our findings suggest that HRV features related to stress can explain differential activations in the auditory cortex (Brodmann areas 39 and 40) during auditory stimulation in dyslexic children

Study of the Spanish Society of Medical Oncology (SEOM) on the access to oncology drugs and predictive biomarkers in Spain

Altres ajuts: This study was funded by SEOM.The Spanish Society of Medical Oncology (SEOM) has carried out a study to analyse the conditions of access to oncology drugs in clinical practice in Spain. For the first time, the access of predictive biomarkers has also been analyzed. A questionnaire was sent to 146 hospitals in Spain to collect information on the process of approval of 11 oncology drugs of an unquestionable clinical benefit and five predictive biomarkers of mandatory determination for specific treatments. Results highlight the still existing differences in the access of oncology drugs, as well as the newly identified differences in the access to predictive biomarkers between Autonomous Communities (AACC) in Spain, as well as between different hospitals within the same Autonomous Community. Conclusions The SEOM considers it necessary to reduce the differences identified, increase homogeneity, and improve conditions of access to oncology drugs and biomarkers, and makes proposals to address these issues

OCLE: A European open access database on climate change effects on littoral and oceanic ecosystems

The authors thank NASA, ESA, EMODnet, BODC, NCAR-UCAR and WCRP, which is responsible for CMIP, and the climate modeling groups for producing and making available their model output and data. This work was supported by the National Plan for Research in Science and Technological Innovation from the Spanish Government 2013-2016 (Ministry of Economy and Competitiveness, C3N project) [grant number: CTM2015-68244-R] and cofunded by the European Regional Development's funds (FEDER). Camino F. de la Hoz acknowledges financial support under a predoctoral grant from the Spanish Ministry of Economy, Industry and Competitiveness [grant number: BES-2016-076434

Controlled Synthesis of Up-Conversion NaYF4:Yb,Tm Nanoparticles for Drug Release under Near IR-Light Therapy

Up-Conversion materials have received great attention in drug delivery applications in recent years. A specifically emerging field includes the development of strategies focusing on photon processes that promote the development of novel platforms for the efficient transport and the controlled release of drug molecules in the harsh microenvironment. Here, modified reaction time, thermal treatment, and pH conditions were controlled in the synthesis of NaYF(4):Yb,Tm up-converted (UC) material to improve its photoluminescence properties. The best blue-emission performance was achieved for the UC3 sample prepared through 24 h-synthesis without thermal treatment at a pH of 5, which promotes the presence of the β-phase and smaller particle size. NaYF(4):Yb,Tm has resulted in a highly efficient blue emitter material for light-driven drug release under near-IR wavelength. Thus, NaYF(4):Yb,Tm up-converted material promotes the N-O bond cleavage of the oxime ester of Ciprofloxacin (prodrug) as a highly efficient photosensitized drug delivery process. HPLC chromatography and transient absorption spectroscopy measurements were performed to evaluate the drug release conversion rate. UC3 has resulted in a very stable and easily recovered material that can be used in several reaction cycles. This straightforward methodology can be extended to other drugs containing photoactive chromophores and is present as an alternative for drug release systems

Ecological typologies of large areas. An application in the Mediterranean Sea

One approach to identifying and mapping the state of marine biophysical conditions is the identification of large-scale ecological units for which conditions are similar and the strategies of management may also be similar. Because biological processes are difficult to directly record over large areas, abiotic characteristics are used as surrogate parameters. In this work, the Mediterranean Sea was classified into homogeneous spatial areas based on abiotic variables. Eight parameters were selected based on salinity, sea surface temperature, photosynthetically active radiation, sea-wave heights and depth variables. The parameters were gathered in grid points of 0.5° spatial resolution in the open sea and 0.125° in coastal areas. The typologies were obtained by data mining the eight parameters throughout the Mediterranean and combining two clustering techniques: self-organizing maps and the k-means algorithm. The result is a division of the Mediterranean Sea into seven typologies. For these typologies, the classification recognizes differences in temperature, salinity and radiation. In addition, it separates coastal from deep areas. The influence of river discharges and the entrance of water from other seas are also reflected. These results are consistent with the ecological requirements of the five studied seagrasses (Posidonia oceanica, Zostera marina, Zostera noltei, Cymodocea nodosa, Halophila stipulacea), supporting the suitability of the resulting classification and the proposed methodology. The approach thus provides a tool for the sustainable management of large marine areas and the ability to address not only present threats but also future conditions, such as climate change.This research is included in the framework of the CoCoNET project (Towards COast to COast NETworks of marine protected areas (from the shore to the high and deep sea), coupled with sea-based wind energy potential) and is funded by the National Plan for Research in Science and Technological Innovation from the Spanish Government 2013–2016 (Ministry of Economy and Competitiveness) (C3N project CTM2015-68244-R) and co-financed by the European Regional Development's funds (FEDER). Melisa Menéndez acknowledges financial support from the Ramon y Cajal Program (RYC-2014-16469). Camino F. de la Hoz acknowledges financial support in the form of a predoctoral grant (Ref: BES-2016-076434) from the Spanish Ministry of Economy, Industry and Competitiveness. We also thank the anonymous reviewers for their comments and suggestion

Femtosecond laser fabrication of monolithic double volume phase-gratings in glass

A diffractive optical element was fabricated by monolithically integrating two volume phase-gratings (VPGs) in the bulk of a single-piece transparent material. A computer model of the diffraction generated by the double volume phase-grating (DVPG) was made with a rigorous coupled wave analysis simulator. Simulations and experiments show that the diffractive behavior of a DVPG can be controlled by arranging the relative displacement and the distance between the VPGs according to Talbot self-imaging planes. In order to diffract the total incident light, the phase accumulation in the VPGs has to be π/2, which was achieved by single-scan femtosecond laser processing of a nanocrystal doped glass as the substrate material. Ex situ microscope images of the cross-sections are presented for laser processed lines in the form of VPGs and DVPGs. The far-field diffraction of DVPGs formed by selectively located VPGs was characterized with a monochromatic 633 nm and a supercontinuum white light. Functional designs of high diffraction efficiency with potential applications in photonics were successfully fabricated in a one-step and free of chemicals process

The Histidine-Phosphocarrier Protein of the Phosphoenolpyruvate: Sugar Phosphotransferase System of Bacillus sphaericus Self-Associates

The phosphotransferase system (PTS) is involved in the use of carbon sources in bacteria. Bacillus sphaericus, a bacterium with the ability to produce insecticidal proteins, is unable to use hexoses and pentoses as the sole carbon source, but it has ptsHI genes encoding the two general proteins of the PTS: enzyme I (EI) and the histidine phosphocarrier (HPr). In this work, we describe the biophysical and structural properties of HPr from B. sphaericus, HPrbs, and its affinity towards EI of other species to find out whether there is inter-species binding. Conversely to what happens to other members of the HPr family, HPrbs forms several self-associated species. The conformational stability of the protein is low, and it unfolds irreversibly during heating. The protein binds to the N-terminal domain of EI from Streptomyces coelicolor, EINsc, with a higher affinity than that of the natural partner of EINsc, HPrsc. Modelling of the complex between EINsc and HPrbs suggests that binding occurs similarly to that observed in other HPr species. We discuss the functional implications of the oligomeric states of HPrbs for the glycolytic activity of B. sphaericus, as well as a strategy to inhibit binding between HPrsc and EINsc

The biomedical abbreviation recognition and resolution (BARR) track: Benchmarking, evaluation and importance of abbreviation recognition systems applied to Spanish biomedical abstracts

Healthcare professionals are generating a substantial volume of clinical data in narrative form. As healthcare providers are confronted with serious time constraints, they frequently use telegraphic phrases, domain-specific abbreviations and shorthand notes. Efficient clinical text processing tools need to cope with the recognition and resolution of abbreviations, a task that has been extensively studied for English documents. Despite the outstanding number of clinical documents written worldwide in Spanish, only a marginal amount of studies has been published on this subject. In clinical texts, as opposed to the medical literature, abbreviations are generally used without their definitions or expanded forms. The aim of the first Biomedical Abbreviation Recognition and Resolution (BARR) track, posed at the IberEval 2017 evaluation campaign, was to assess and promote the development of systems for generating a sense inventory of medical abbreviations. The BARR track required the detection of mentions of abbreviations or short forms and their corresponding long forms or definitions from Spanish medical abstracts. For this track, the organizers provided the BARR medical document collection, the BARR corpus of manually annotated abstracts labelled by domain experts and the BARR-Markyt evaluation platform. A total of 7 teams submitted 25 runs for the two BARR subtasks: (a) the identification of mentions of abbreviations and their definitions and (b) the correct detection of short form-long form pairs. Here we describe the BARR track setting, the obtained results and the methodologies used by participating systems. The BARR task summary, corpus, resources and evaluation tool for testing systems beyond this campaign are available at: http://temu.inab.org .We acknowledge the Encomienda MINETAD-CNIO/OTG Sanidad Plan TL and Open-Minted (654021) H2020 project for funding.Postprint (published version

Identification and characterization of Rhipicephalus (Boophilus) microplus candidate protective antigens for the control of cattle tick infestations

The cattle ticks, Rhipicephalus (Boophilus) spp., affect cattle production in tropical and subtropical regions of the world. Tick vaccines constitute a cost-effective and environmentally friendly alternative to tick control. The recombinant Rhipicephalus microplus Bm86 antigen has been shown to protect cattle against tick infestations. However, variable efficacy of Bm86-based vaccines against geographic tick strains has encouraged the research for additional tick-protective antigens. Herein, we describe the analysis of R. microplus glutathione-S transferase, ubiquitin (UBQ), selenoprotein W, elongation factor-1 alpha, and subolesin (SUB) complementary DNAs (cDNAs) by RNA interference (RNAi) in R. microplus and Rhipicephalus annulatus. Candidate protective antigens were selected for vaccination experiments based on the effect of gene knockdown on tick mortality, feeding, and fertility. Two cDNA clones encoding for UBQ and SUB were used for cattle vaccination and infestation with R. microplus and R. annulatus. Control groups were immunized with recombinant Bm86 or adjuvant/saline. The highest vaccine efficacy for the control of tick infestations was obtained for Bm86. Although with low immunogenic response, the results with the SUB vaccine encourage further investigations on the use of recombinant subolesin alone or in combination with other antigens for the control of cattle tick infestations. The UBQ peptide showed low immunogenicity, and the results of the vaccination trial were inconclusive to assess the protective efficacy of this antigen. These experiments showed that RNAi could be used for the selection of candidate tick-protective antigens. However, vaccination trials are necessary to evaluate the effect of recombinant antigens in the control of tick infestations, a process that requires efficient recombinant protein production and formulation systems