Global Forest Types Based on Climatic and Vegetation Data

Forest types are generally identified using vegetation or land-use types. However, vegetation classifications less frequently consider the actual forest attributes within each type. To address this in an objective way across different regions and to link forest attributes with their climate, we aimed to improve the distribution of forest types to be more realistic and useful for biodiversity preservation, forest management, and ecological and forestry research. The forest types were classified using an unsupervised cluster analysis method by combining climate variables with normalized difference vegetation index (NDVI) data. Unforested regions were masked out to constrict our study to forest type distributions, using a 20% tree cover threshold. Descriptive names were given to the defined forest types based on annual temperature, precipitation, and NDVI values. Forest types had distinct climate and vegetation characteristics. Regions with similar NDVI values, but with different climate characteristics, which would be merged in previous classifications, could be clearly distinguished. However, small-range forest types, such as montane forests, were challenging to differentiate. At macroscale, the resulting forest types are largely consistent with land-cover types or vegetation types defined in previous studies. However, considering both potential and current vegetation data allowed us to create a more realistic type distribution that differentiates actual vegetation types and thus can be more informative for forest managers, conservationists, and forest ecologists. The newly generated forest type distribution is freely available to download and use for non-commercial purposes as a GeoTIFF file via doi: 10.13140/RG.2.2.19197.90082)

Spectral Similarity and PRI Variations for a Boreal Forest Stand Using Multi-angular Airborne Imagery

The photochemical reflectance index (PRI) is a proxy for light use efficiency (LUE), and is used in remote sensing to measure plant stress and photosynthetic downregulation in plant canopies. It is known to depend on local light conditions within a canopy indicating non-photosynthetic quenching of incident radiation. Additionally, when measured from a distance, canopy PRI depends on shadow fraction-the fraction of shaded foliage in the instantaneous field of view of the sensor-due to observation geometry. Our aim is to quantify the extent to which sunlit fraction alone can describe variations in PRI so that it would be possible to correct for its variation and identify other possible factors affecting the PRI-sunlit fraction relationship. We used a high spatial and spectral resolution Aisa Eagle airborne imaging spectrometer above a boreal Scots pine site in Finland (Hyytiala forest research station, 61 degrees 50'N, 24 degrees 17'E), with the sensor looking in nadir and tilted (off-nadir) directions. The spectral resolution of the data was 4.6 nm, and the spatial resolution was 0.6 m. We compared the PRI for three different scatter angles (beta = 19 degrees, 55 degrees and 76 degrees defined as the angle between sensor and solar directions) at the forest stand level, and observed a small (0.006) but statistically significant (p <0.01) difference in stand PRI. We found that stand mean PRI was not a direct function of sunlit fraction. However, for each scatter angle separately, we found a clear non-linear relationship between PRI and sunlit fraction. The relationship was systematic and had a similar shape for all of the scatter angles. As the PRI-sunlit fraction curves for the different scatter angles were shifted with respect to each other, no universal curve could be found causing the observed independence of canopy PRI from the average sunlit fraction of each view direction. We found the shifts of the curves to be related to a leaf structural effect on canopy scattering: the ratio of needle spectral reflectance to transmittance. We demonstrate that modeling PRI-sunlit fraction relationships using high spatial resolution imaging spectroscopy data is suitable and needed in order to quantify PRI variations over forest canopies.Peer reviewe

In situ measurement of Scots pine needle PRI

Background: The Photochemical Reflectance Index (PRI) calculated from narrow-band spectral reflectance data is a vegetation index which is increasingly used as an indicator of photosynthetic activity. The leaf-level link between the status of photosynthetic apparatus and PRI has been robustly established under controlled light conditions. However, when a whole canopy is measured instantaneously, the PRI signal is heavily modified by vegetation structure and local variations in incident light conditions. To apply PRI for monitoring the photosynthesis of whole canopies under natural conditions, these large-scale measurements need to be validated against simultaneous leaf PRI. Unfortunately, PRI changes dynamically with incident light and has a large natural variation. No generally accepted procedure exists today for determining the PRI of canopy elements in situ. Results: We present a successful procedure for in situ measurements of needle PRI. We describe, characterize and test an optical measurement protocol and demonstrate its applicability in field conditions. The measurement apparatus consisted of a light source, needle clip, spectroradiometer and a controlling computer. The light level inside the clip was approximately two-thirds of that on sunlit needle surfaces at midday. During each measurement the needle was inserted into the clip for approximately 5 s. We found no near-instantaneous changes (sub-second scale jumps) in PRI during the measurements. The time constants for PRI variation in light to full shade acclimations were approximately 10 s. The procedure was successfully applied to monitor the greening-up of Scots pine trees. We detected both facultative (diurnal) PRI changes of 0.02 (unitless) and constitutive (seasonal) variations of 0.1. In order to reliably detect the facultative PRI change of 0.02, 20 needles need to be sampled from both sunlit and shaded locations. Conclusions: We established a robust procedure for irradiance-dependent leaf (needle) PRI measurements, facilitating empirical scaling of PRI from leaf (needle) to full canopy level and the application of PRI to monitoring the changes in highly structured vegetation. The measured time constants, and facultative and constitutive PRI variations support the use of an artificial light for in situ PRI measurements at leaf (needle) level.Peer reviewe

Understanding the temporal dimension of the red-edge spectral region for forest decline detection using high-resolution hyperspectral and Sentinel-2a imagery

The operational monitoring of forest decline requires the development of remote sensing methods that are sensitive to the spatiotemporal variations of pigment degradation and canopy defoliation. In this context, the red-edge spectral region (RESR) was proposed in the past due to its combined sensitivity to chlorophyll content and leaf area variation. In this study, the temporal dimension of the RESR was evaluated as a function of forest decline using a radiative transfer method with the PROSPECT and 3D FLIGHT models. These models were used to generate synthetic pine stands simulating decline and recovery processes over time and explore the temporal rate of change of the red-edge chlorophyll index (CI) as compared to the trajectories obtained for the structure-related Normalized Difference Vegetation Index (NDVI). The temporal trend method proposed here consisted of using synthetic spectra to calculate the theoretical boundaries of the subspace for healthy and declining pine trees in the temporal domain, defined by CItime=n/CItime=n+1 vs. NDVItime=n/NDVItime=n+1. Within these boundaries, trees undergoing decline and recovery processes showed different trajectories through this subspace. The method was then validated using three high-resolution airborne hyperspectral images acquired at 40 cm resolution and 260 spectral bands of 6.5 nm full-width half-maximum (FWHM) over a forest with widespread tree decline, along with field-based monitoring of chlorosis and defoliation (i.e., ‘decline’ status) in 663 trees between the years 2015 and 2016. The temporal rate of change of chlorophyll vs. structural indices, based on reflectance spectra extracted from the hyperspectral images, was different for trees undergoing decline, and aligned towards the decline baseline established using the radiative transfer models. By contrast, healthy trees over time aligned towards the theoretically obtained healthy baseline. The applicability of this temporal trend method to the red-edge bands of the MultiSpectral Imager (MSI) instrument on board Sentinel-2a for operational forest status monitoring was also explored by comparing the temporal rate of change of the Sentinel-2-derived CI over areas with declining and healthy trees. Results demonstrated that the Sentinel-2a red-edge region was sensitive to the temporal dimension of forest condition, as the relationships obtained for pixels in healthy condition deviated from those of pixels undergoing decline.JRC.D.1-Bio-econom

Measurement of Diurnal Variation in Needle PRI and Shoot Photosynthesis in a Boreal Forest

This article has an erratum: Remote Sens. 2018. 10, 2030. DOI 10.3390/rs10122030. WOS: 000455637600172Peer reviewe

Assessing the effects of forest health on sun-induced chlorophyll fluorescence using the FluorFLIGHT 3-D radiative transfer model to account for forest structure

Sun-induced fluorescence (SIF) has been proven to serve as a proxy of photosynthesis activity and therefore, as an early indicator of physiological alterations for global monitoring of vegetation. However, the interpretation of SIF over different spatial resolutions is critical to bridge the existing gap between local and global scales. This study provides insight into the influence of scene components, and forest structure and composition on the quantification of the red and far-red fluorescence signal as an early indicator of forest decline. The experiments were conducted over an oak forest (Quercus ilex) affected by water stress and Phytophthora infection in the southwest of Spain. SIF retrievals through the Fraunhofer Line Depth (FLD) principle with three spectral bands F (FLD3) was assessed using high resolution (60 cm) hyperspectral imagery extracting sunlit crown, full crown and aggregated pixels. Results showed the link between F (FLD3) extracted from sunlit crown pixels and the tree physiological condition in this context of disease infection, yielding significant relationships (r2=0.57, p0.05). These results demonstrate the need for methods to accurately retrieve crown SIF from aggregated pixels in heterogeneous forest canopies with large physiological variability among individual trees. This aspect is critical where structural canopy variations and the direct influence of background and shadows affect the SIF amplitude masking the natural variations caused by physiological condition. FluorFLIGHT, a modified version of the three dimensional (3-D) radiative transfer model FLIGHT was developed for this work, enabling the simulation of canopy radiance and reflectance including fluorescence effects from different spatial resolutions and percentage cover levels. The 3-D modelling approach proposed here significantly improved the relationship between Fs and F (FLD3) extracted from aggregated pixels (r2=0.70, p<0.001), performing better than when aggregation effects were not considered (r2=0.42, p<0.01). The FluorFLIGHT model used in this study improved the retrieval of SIF from aggregated pixels as a function of fractional cover, leaf area index and chlorophyll content yielding significant relationships between Fs ground-data measurements and fluorescence quantum yield estimated with FluorFLIGHT at p<0.01 (r2=0.79). The methodology presented here using FluorFLIGHT also demonstrated its capabilities for mapping SIF at the tree level for single tree assessment of forest physiological condition in the context of early disease detection.JRC.D.1-Bio-econom

Effect of forest structure and health on the relative surface temperature captured by airborne thermal imagery ­­ : Case study in Norway Spruce-dominated stands in Southern Finland

The effect of forest structure and health on the relative surface temperature captured by airborne thermal imagery was investigated in Norway Spruce-dominated stands in Southern Finland. Airborne thermal imagery, airborne scanning light detection and ranging (LiDAR) data and 92 field-measured sample plots were acquired at the area of interest. The surface temperature correlated most negatively with the logarithm of stem volume, Lorey’s height and the logarithm of basal area at a resolution of 254 m2 (9-m radius). LiDAR-derived metrics: the standard deviations of the canopy heights, canopy height (upper percentiles and maximum height) and canopy cover percentage were most strongly negatively correlated with the surface temperature. Although forest structure has an effect on the detected surface temperature, higher temperatures were detected in severely defoliated canopies and the difference was statistically significant. We also found that the surface temperature differences between the segmented canopy and the entire plot were greater in the defoliated plots, indicating that thermal images may also provide some additional information for classifying forests health status. Based on our results, the effects of forest structure on the surface temperature captured by airborne thermal imagery should be taken into account when developing forest health mapping applications using thermal imagery.Peer reviewe