Annual Report for Gravity Collection Lysimeter Monitoring Plan - ERDF Cells 5 and 6

The data and analyses contained in this report reflect the initial characterization of construction and consolidation water in Cells 5 and 6 lysimeters. Therefore, the scope of this report will be to establish constituent levels and document dewatering activities completed to date

TRiP: Tracking Rhythms in Plants, an Automated Leaf Movement Analysis Program for Circadian Period Estimation

Background: A well characterized output of the circadian clock in plants is the daily rhythmic movement of leaves. This process has been used extensively in Arabidopsis to estimate circadian period in natural accessions as well as mutants with known defects in circadian clock function. Current methods for estimating circadian period by leaf movement involve manual steps throughout the analysis and are often limited to analyzing one leaf or cotyledon at a time. Methods: In this study, we describe the development of TRiP (Tracking Rhythms in Plants), a new method for estimating circadian period using a motion estimation algorithm that can be applied to whole plant images. To validate this new method, we apply TRiP to a Recombinant Inbred Line (RIL) population in Arabidopsis using our high-throughput imaging platform. We begin imaging at the cotyledon stage and image through the emergence of true leaves. TRiP successfully tracks the movement of cotyledons and leaves without the need to select individual leaves to be analyzed

Ecological studies of the surface microlayer of small ponds at the UWM Field Station

The seasonal variation and enrichment of nutrients, pigments, bacteria, fungi and algae in the surface microlayer and subsurface waters were investigated in three ponds at the University of Wisconsin-Milwaukee Field Station, Saukville, Ozaukee County, Wisconsin. Samples were collected intermittently from June, 1978 through October, 1981. Microlayer samples were collected using a glass plate and a screen sampler. All ponds showed dramatic seasonal variations in nutrients, microorganisms and algae in both surface and subsurface waters. The data indicate that physical factors such as adsubble processes, antirain and atmospheric deposition, along with biological factors such as heterotrophic mineralization and autotrophic uptake, play significant roles in causing the enrichment or lack of enrichment of materials within the microlayer. Furthermore, this study suggests that surface microlayers, particularly in shallow environments where algal species are adapted to high light conditions. can be sites of high biological activity

UAS-SfM for coastal research : geomorphic feature extraction and land cover classification from high-resolution elevation and optical imagery

© The Author(s), 2017. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Remote Sensing 9 (2017): 1020, doi:10.3390/rs9101020.The vulnerability of coastal systems to hazards such as storms and sea-level rise is typically characterized using a combination of ground and manned airborne systems that have limited spatial or temporal scales. Structure-from-motion (SfM) photogrammetry applied to imagery acquired by unmanned aerial systems (UAS) offers a rapid and inexpensive means to produce high-resolution topographic and visual reflectance datasets that rival existing lidar and imagery standards. Here, we use SfM to produce an elevation point cloud, an orthomosaic, and a digital elevation model (DEM) from data collected by UAS at a beach and wetland site in Massachusetts, USA. We apply existing methods to (a) determine the position of shorelines and foredunes using a feature extraction routine developed for lidar point clouds and (b) map land cover from the rasterized surfaces using a supervised classification routine. In both analyses, we experimentally vary the input datasets to understand the benefits and limitations of UAS-SfM for coastal vulnerability assessment. We find that (a) geomorphic features are extracted from the SfM point cloud with near-continuous coverage and sub-meter precision, better than was possible from a recent lidar dataset covering the same area; and (b) land cover classification is greatly improved by including topographic data with visual reflectance, but changes to resolution (when <50 cm) have little influence on the classification accuracy.This project was funded by the U.S. Geological Survey (USGS) Coastal and Marine Geology Program and the Department of the Interior Northeast Climate Science Center

Extrapair paternity in two populations of the socially monogamous Thorn-tailed Rayadito Aphrastura spinicauda (Passeriformes: Furnariidae)

Studies on extrapair paternity (EPP) are key to understanding the ecological and evolutionary drivers of variation in avian mating strategies, but information is currently lacking for most tropical and subtropical taxa. We describe the occurrence of EPP in two populations of a South American socially monogamous bird, the Thorn-tailed Rayadito, based on data from 266 broods and 895 offspring that were sampled during six breeding seasons in north-central and southern Chile. In the northern population, 21% of the broods contained at least one extrapair young and 14% of all offspring were sired by an extrapair male, while in the southern population, we detected extrapair offspring (EPO) in 14% of the broods, and 6% of all offspring were EPO. Variation in the frequency of EPP could stem from population differences in the duration of the breeding season or the density of breeding individuals. Other factors such as differences in breeding synchrony and variation in food availability need to be evaluated. More reports on EPP rates are necessary to determine the patterns of taxonomic and geographic variation in mating strategies in Neotropical birds, and to better understand the differences in ecological dynamics between northern and southern hemisphere populations.Fil: Botero Delgadillo, Esteban. Max Plank Institute For Ornithology; Alemania. SELVA: Investigación para la Conservación en el Neotrópico; Colombia. Universidad de Chile; ChileFil: Quirici, Verónica. Universidad Andrés Bello; ChileFil: Poblete, Yanina. Universidad de Las Américas; ChileFil: Ippi, Silvina Graciela. Universidad Nacional del Comahue. Centro Regional Universitario Bariloche. Departamento de Ecología; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Patagonia Norte; ArgentinaFil: Kempenaers, Bart. Max Plank Institute For Ornithology; AlemaniaFil: Vásquez, Rodrigo A.. Universidad de Chile; Chil

Interactions Between Zooplankton and Karenia brevis in the Gulf of Mexico.

Blooms of the toxic dinoflagellate K. brevis are common in the Gulf of Mexico, yet no in situ studies of the interactions between zooplankton and K. brevis in the Gulf of Mexico have been conducted. Zooplankton numerical abundance, biomass and taxonomic composition of nonbloom and K. brevis bloom stations within the ECOHAB study area were compared. At nonbloom stations, the most important determinant species were Parvolcalanus crassirostris, Oithona colcarva and Paracalanus quasimodo at the 5-m isobath and P. quasimodo, O. colcarva and Oikopleura dioka at the 25-m isobath. There was considerable overlap between the 5 and 25-m isobaths, with 9 species contributing to the top 90% of numerical abundance at both isobaths. Within K. brevis blooms Acartia tonsa, Centropages velificatus, Temora turbinata, Evadne tergestina, O. colcarva, O. dioika, and P. crassirostris were consistently dominant. Variations between non-bloom and bloom assemblages were evident, including variations in numerical abundance and biomass and the reduction in numerical abundance of 3 key species. Calculated grazing pressure proved insufficient to terminate K. brevis blooms, despite occasional grazing hot spots

Transient coastal landscapes : rising sea level threatens salt marshes

© The Author(s), 2018. This is the author's version of the work and is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Science of The Total Environment 640-641 (2018): 1148-1156, doi:10.1016/j.scitotenv.2018.05.235.Salt marshes are important coastal environments that provide key ecological services. As sea level rise has accelerated globally, concerns about the ability of salt marshes to survive submergence are increasing. Previous estimates of likely survival of salt marshes were based on ratios of sea level rise to marsh platform accretion. Here we took advantage of an unusual, long-term (1979-2015), spatially detailed comparison of changes in a representative New England salt marsh to provide an empirical estimate of habitat losses based on actual measurements. We show prominent changes in habitat mosaic within the marsh, consistent and coincident with increased submergence and coastal erosion. Model results suggest that at current rates of sea level rise, marsh platform accretion, habitat loss, and with the limitation of the widespread “coastal squeeze”, the entire ecosystem might disappear by the beginning of the next century, a fate that might be likely for many salt marshes elsewhere.Ivan Valiela and Elizabeth Elmstrom were supported by Woods Hole Sea Grant, NOAA grant no. NA14OAR4170074. Javier Lloret was supported by a Rosenthal Postdoctoral Fellowship Award from the Marine Biological Laboratory, and by a Northeast Climate Science Center Fellowship. Tynan Bowyer was supported by a Metcalf Research Fellowship of the University of Chicago. David Remsen was supported by MBL Cox and Bernstein funds.2020-06-0

Exploratory behavior, but not aggressiveness, is correlated with breeding dispersal propensity in the highly philopatric thorn-tailed rayadito

Studies on the relationship between behavioral traits and dispersal are necessary to understand the evolution of dispersal syndromes. Empirical studies have mainly focused on natal dispersal, even though behavioral differences between dispersers and philopatric individuals are suspected to hold through the whole life cycle, potentially affecting breeding dispersal propensity. Using capture–mark–recapture data and behavioral trials in a forest passerine, the thorn-tailed rayadito Aphrastura spinicauda, we describe inter-individual differences in exploratory behavior and aggressiveness, and investigate the relationship between those traits and breeding dispersal. Our study took place in Fray Jorge National Park, north-central Chile, where a relatively isolated population of rayaditos inhabits a naturally fragmented environment. We found that scores for behavioral traits were consistent between years. Exploratory behavior was similar between sexes, while males showed higher levels of aggression towards a conspecific male intruder. Only exploratory behavior was related to breeding dispersal propensity, with fast-exploring rayaditos being more likely to have dispersed between seasons. This finding provides indirect evidence for the existence of a dispersal strategy that could reduce dispersal costs in the fragmented landscape of Fray Jorge. To our knowledge, this is the first study documenting an association between breeding dispersal and exploratory behavior in a wild bird population. A longitudinal individual-based study will help determining whether this association constitutes a behavioral syndrome.Indexación: Scopu

Red Tides In the Gulf of Mexico: Where, When, and Why?

Independent data from the Gulf of Mexico are used to develop and test the hypothesis that the same sequence of physical and ecological events each year allows the toxic dinoflagellate Karenia brevis to become dominant. A phosphorus-rich nutrient supply initiates phytoplankton succession, once deposition events of Saharan iron-rich dust allow Trichodesmium blooms to utilize ubiquitous dissolved nitrogen gas within otherwise nitrogen-poor sea water. They and the co-occurring K. brevis are positioned within the bottom Ekman layers, as a consequence of their similar diel vertical migration patterns on the middle shelf. Upon onshore upwelling of these near-bottom seed populations to CDOM-rich surface waters of coastal regions, light-inhibition of the small red tide of similar to 1 ug chl l(-1) of ichthytoxic K. brevis is alleviated. Thence, dead fish serve as a supplementary nutrient source, yielding large, self-shaded red tides of similar to 10 ug chl l(-1). The source of phosphorus is mainly of fossil origin off west Florida, where past nutrient additions from the eutrophied Lake Okeechobee had minimal impact. In contrast, the P-sources are of mainly anthropogenic origin off Texas, since both the nutrient loadings of Mississippi River and the spatial extent of the downstream red tides have increased over the last 100 years. During the past century and particularly within the last decade, previously cryptic Karenia spp. have caused toxic red tides in similar coastal habitats of other western boundary currents off Japan, China, New Zealand, Australia, and South Africa, downstream of the Gobi, Simpson, Great Western, and Kalahari Deserts, in a global response to both desertification and eutrophication