The Centaurus A Northern Middle Lobe as a Buoyant Bubble

We model the northern middle radio lobe of Centaurus A (NGC 5128) as a buoyant bubble of plasma deposited by an intermittently active jet. The extent of the rise of the bubble and its morphology imply that the ratio of its density to that of the surrounding ISM is less than 10^{-2}, consistent with our knowledge of extragalactic jets and minimal entrainment into the precursor radio lobe. Using the morphology of the lobe to date the beginning of its rise through the atmosphere of Centaurus A, we conclude that the bubble has been rising for approximately 140Myr. This time scale is consistent with that proposed by Quillen et al. (1993) for the settling of post-merger gas into the presently observed large scale disk in NGC 5128, suggesting a strong connection between the delayed re-establishment of radio emission and the merger of NGC 5128 with a small gas-rich galaxy. This suggests a connection, for radio galaxies in general, between mergers and the delayed onset of radio emission. In our model, the elongated X-ray emission region discovered by Feigelson et al. (1981), part of which coincides with the northern middle lobe, is thermal gas that originates from the ISM below the bubble and that has been uplifted and compressed. The "large-scale jet" appearing in the radio images of Morganti et al. (1999) may be the result of the same pressure gradients that cause the uplift of the thermal gas, acting on much lighter plasma, or may represent a jet that did not turn off completely when the northern middle lobe started to buoyantly rise. We propose that the adjacent emission line knots (the "outer filaments") and star-forming regions result from the disturbance, in particular the thermal trunk, caused by the bubble moving through the extended atmosphere of NGC 5128.Comment: 38 pages, 13 figures, submitted to ApJ; a version with higher resolution figures is available at http://www.mso.anu.edu.au/~saxton/papers/cena.pd

Interim solar cell testing procedures for terrestrial applications

An interim draft of a set of test procedures, developed by NASA/ERDA, for the manufacture of solar cells is introduced. This version includes procedures for cell testing both outdoors in natural sunlight and indoors in simulated sunlight, a description of the necessary apparatus and equipment, the calibration and use of standard solar cells, and a proposed air-mass-two (AM2) solar spectrum

Interactions of Jets with Inhomogeneous Cloudy Media

We present two-dimensional slab-jet simulations of jets in inhomogeneous media consisting of a tenuous hot medium populated with a small filling factor by warm, dense clouds. The simulations are relevant to the structure and dynamics of sources such as Gigahertz Peak Spectrum and Compact Steep Spectrum radio galaxies, High Redshift Radio Galaxies and radio galaxies in cooling flows. The jets are disrupted to a degree depending upon the filling factor of the clouds. With a small filling factor, the jet retains some forward momentum but also forms a halo or bubble around the source. At larger filling factors channels are formed in the cloud distribution through which the jet plasma flows and a hierarchical structure consisting of nested lobes and an outer enclosing bubble results. We suggest that the CSS quasar 3C48 is an example of a low filling factor jet - interstellar medium interaction whilst M87 may be an example of the higher filling factor type of interaction. Jet disruption occurs primarily as a result of Kelvin-Helmholtz instabilities driven by turbulence in the radio cocoon not through direct jet-cloud interactions, although there are some examples of these. In all radio galaxies whose morphology may be the result of jet interactions with an inhomogeneous interstellar medium we expect that the dense clouds will be optically observable as a result of radiative shocks driven by the pressure of the radio cocoon. We also expect that the radio galaxies will possess faint haloes of radio emitting material well beyond the observable jet structure.Comment: 21 pages, 16 figures, submitted to MNRAS. A version with full resolution figures is available at: http://www.mssl.ucl.ac.uk/~cjs2/pdf/cloudy_hue.pd

Production of ring-like structure in the cocoon of Hercules A

The radio lobes of the radio galaxy Hercules A contain intriguing ring-like structures concentric with the jet axis. To investigate the occurrence of such features, we have used hydrodynamic simulations of jets with a range of Mach numbers (from M=2 to 50) and densities (down to a ratio of 1E-4 relative to the background) to generate ray-traced images simulating synchrotron emission from the time-dependent shock structures. We compare these images with observations of Hercules A, and consider the physical nature and temporal evolution of the most plausible configurations. We find that the observed ring-like structures are well explained as nearly annular shocks propagating in the backflow surrounding the jet. We infer that the jet is oriented at between 30 and 70 degrees to the line of sight, consistent with radio depolarisation observations of Gizani & Leahy. The observational lack of hot-spots at the extremities of the radio lobes, and the possible presence of a buried hot-spot near the base of the western lobe, are explained in terms of the intrinsic brightness fluctuations and dynamics of the terminal shock of an ultra-light, low Mach number jet that surges along its axis due to intermittent pinching and obstruction by turbulent backflow in the cocoon. We conclude from the appearance of both sides of the Hercules A, that both jets are on the borderline of becoming fully turbulent.Comment: 25 pages; 11 figures; 2 tables; ApJ submitted & revised. A version with higher resoluion figures is at http://www.mso.anu.edu.au/~saxton/show/papers/hera.pd

The Version-2 Global Precipitation Climatology Project (GPCP) Monthly Precipitation Analysis (1979–Present)

The Global Precipitation Climatology Project (GPCP) Version-2 Monthly Precipitation Analysis is described. This globally complete, monthly analysis of surface precipitation at 2.58 latitude 3 2.58 longitude resolution is available from January 1979 to the present. It is a merged analysis that incorporates precipitation estimates from low-orbit satellite microwave data, geosynchronous-orbit satellite infrared data, and surface rain gauge obser-vations. The merging approach utilizes the higher accuracy of the low-orbit microwave observations to calibrate, or adjust, the more frequent geosynchronous infrared observations. The dataset is extended back into the prem-icrowave era (before mid-1987) by using infrared-only observations calibrated to the microwave-based analysis of the later years. The combined satellite-based product is adjusted by the rain gauge analysis. The dataset archive also contains the individual input fields, a combined satellite estimate, and error estimates for each field. This monthly analysis is the foundation for the GPCP suite of products, including those at finer temporal resolution. The 23-yr GPCP climatology is characterized, along with time and space variations of precipitation. 1

Naturally p-hydroxybenzoylated lignins in palms

The industrial production of palm oil concurrently generates a substantial amount of empty fruit bunch (EFB) fibers that could be used as a feedstock in a lignocellulose-based biorefinery. Lignin byproducts generated by this process may offer opportunities for the isolation of value-added products, such as p-hydroxybenzoate (pBz), to help offset operating costs. Analysis of the EFB lignin by nuclear magnetic resonance (NMR) spectroscopy clearly revealed the presence of bound acetate and pBz, with saponification revealing that 1.1 wt% of the EFB was pBz; with a lignin content of 22.7 %, 4.8 % of the lignin is pBz that can be obtained as a pure component for use as a chemical feedstock. Analysis of EFB lignin by NMR and derivatization followed by reductive cleavage (DFRC) showed that pBz selectively acylates the γ-hydroxyl group of S units. This selectivity suggests that pBz, analogously with acetate in kenaf, p-coumarate in grasses, and ferulate in a transgenic poplar augmented with a feruloyl-CoA monolignol transferase (FMT), is incorporated into the growing lignin chain via its γ-p-hydroxybenzoylated monolignol conjugate. Involvement of such conjugates in palm lignification is proven by the observation of novel p-hydroxybenzoylated non-resinol β–β-coupled units in the lignins. Together, the data implicate the existence of p-hydroxybenzoyl-CoA:monolignol transferases that are involved in lignification in the various willows (Salix spp.), poplars and aspen (Populus spp., family Salicaceae), and palms (family Arecaceae) that have p-hydroxybenzoylated lignins. Even without enhancing the levels by breeding or genetic engineering, current palm oil EFB ‘wastes’ should be able to generate a sizeable stream of p-hydroxybenzoic acid that offers opportunities for the development of value-added products derived from the oil palm industry

A Comparison of Foliage Profiles in the Sierra National Forest Obtained with a Full-Waveform Under-Canopy EVI Lidar System with the Foliage Profiles Obtained with an Airborne Full-Waveform LVIS Lidar System

Foliage profiles retrieved froma scanning, terrestrial, near-infrared (1064 nm), full-waveformlidar, the Echidna Validation Instrument (EVI), agree well with those obtained from an airborne, near-infrared, full-waveform, large footprint lidar, the Lidar Vegetation Imaging Sensor (LVIS). We conducted trials at 5 plots within a conifer stand at Sierra National Forest in August, 2008. Foliage profiles retrieved from these two lidar systems are closely correlated (e.g., r = 0.987 at 100 mhorizontal distances) at large spatial coverage while they differ significantly at small spatial coverage, indicating the apparent scanning perspective effect on foliage profile retrievals. Alsowe noted the obvious effects of local topography on foliage profile retrievals, particularly on the topmost height retrievals. With a fine spatial resolution and a small beam size, terrestrial lidar systems complement the strengths of the airborne lidars by making a detailed characterization of the crowns from a small field site, and thereby serving as a validation tool and providing localized tuning information for future airborne and spaceborne lidar missions

The Conservation Status of Marine Bony Shorefishes of the Greater Caribbean

The greater Caribbean biogeographic region covered in this report (representing 38 countries and territories) encompasses an outstanding marine bony shorefish richness of approximately 1,360 species, with many (53%) being endemic. This report provides an overview of the conservation status of greater Caribbean shorefishes, with detailed information available through the IUCN Red List, and gives recommendations

Structure and Inhibition of the SARS Coronavirus Envelope Protein Ion Channel

The envelope (E) protein from coronaviruses is a small polypeptide that contains at least one α-helical transmembrane domain. Absence, or inactivation, of E protein results in attenuated viruses, due to alterations in either virion morphology or tropism. Apart from its morphogenetic properties, protein E has been reported to have membrane permeabilizing activity. Further, the drug hexamethylene amiloride (HMA), but not amiloride, inhibited in vitro ion channel activity of some synthetic coronavirus E proteins, and also viral replication. We have previously shown for the coronavirus species responsible for severe acute respiratory syndrome (SARS-CoV) that the transmembrane domain of E protein (ETM) forms pentameric α-helical bundles that are likely responsible for the observed channel activity. Herein, using solution NMR in dodecylphosphatidylcholine micelles and energy minimization, we have obtained a model of this channel which features regular α-helices that form a pentameric left-handed parallel bundle. The drug HMA was found to bind inside the lumen of the channel, at both the C-terminal and the N-terminal openings, and, in contrast to amiloride, induced additional chemical shifts in ETM. Full length SARS-CoV E displayed channel activity when transiently expressed in human embryonic kidney 293 (HEK-293) cells in a whole-cell patch clamp set-up. This activity was significantly reduced by hexamethylene amiloride (HMA), but not by amiloride. The channel structure presented herein provides a possible rationale for inhibition, and a platform for future structure-based drug design of this potential pharmacological target

Think globally, measure locally: The MIREN standardized protocol for monitoring plant species distributions along elevation gradients

Climate change and other global change drivers threaten plant diversity in mountains worldwide. A widely documented response to such environmental modifications is for plant species to change their elevational ranges. Range shifts are often idiosyncratic and difficult to generalize, partly due to variation in sampling methods. There is thus a need for a standardized monitoring strategy that can be applied across mountain regions to assess distribution changes and community turnover of native and non-native plant species over space and time. Here, we present a conceptually intuitive and standardized protocol developed by the Mountain Invasion Research Network (MIREN) to systematically quantify global patterns of native and non-native species distributions along elevation gradients and shifts arising from interactive effects of climate change and human disturbance. Usually repeated every five years, surveys consist of 20 sample sites located at equal elevation increments along three replicate roads per sampling region. At each site, three plots extend from the side of a mountain road into surrounding natural vegetation. The protocol has been successfully used in 18 regions worldwide from 2007 to present. Analyses of one point in time already generated some salient results, and revealed region-specific elevational patterns of native plant species richness, but a globally consistent elevational decline in non-native species richness. Non-native plants were also more abundant directly adjacent to road edges, suggesting that disturbed roadsides serve as a vector for invasions into mountains. From the upcoming analyses of time series, even more exciting results can be expected, especially about range shifts. Implementing the protocol in more mountain regions globally would help to generate a more complete picture of how global change alters species distributions. This would inform conservation policy in mountain ecosystems, where some conservation policies remain poorly implemented