A small molecule that induces assembly of a four way DNA junction at low temperature

Small molecules that induce the formation of higher order DNA structures have potential therapeutic and nanotechnology applications. Screening of a click library has identified the first compound to induce the formation of a Holliday junction structure at room temperature without the need for a high temperature annealing step

Towards segmentation and spatial alignment of the human embryonic brain using deep learning for atlas-based registration

We propose an unsupervised deep learning method for atlas based registration to achieve segmentation and spatial alignment of the embryonic brain in a single framework. Our approach consists of two sequential networks with a specifically designed loss function to address the challenges in 3D first trimester ultrasound. The first part learns the affine transformation and the second part learns the voxelwise nonrigid deformation between the target image and the atlas. We trained this network end-to-end and validated it against a ground truth on synthetic datasets designed to resemble the challenges present in 3D first trimester ultrasound. The method was tested on a dataset of human embryonic ultrasound volumes acquired at 9 weeks gestational age, which showed alignment of the brain in some cases and gave insight in open challenges for the proposed method. We conclude that our method is a promising approach towards fully automated spatial alignment and segmentation of embryonic brains in 3D ultrasound

Inferring fish escape behaviour in trawls based on catch comparison data: Model development and evaluation based on data from Skagerrak, Denmark

During the fishing process, fish react to a trawl with a series of behaviours that often are species and size specific. Thus, a thorough understanding of fish behaviour in relation to fishing gear and a scientific understanding of the ability of different gear designs to utilize or stimulate various behavioural patterns during the catching process are essential for developing more efficient, selective, and environmentally friendly trawls. Although many behavioural studies using optical and acoustic observation systems have been conducted, harsh observation conditions on the fishing grounds often hamper the ability to directly observe fish behaviour in relation to fishing gear. As an alternative to optical and acoustic methods, we developed and applied a new mathematical model to catch data to extract detailed and quantitative information about species- and size-dependent escape behaviour in towed fishing gear such as trawls. We used catch comparison data collected with a twin trawl setup; the only difference between the two trawls was that a 12 m long upper section was replaced with 800 mm diamond meshes in one of them. We investigated the length-based escape behaviour of cod (Gadus morhua), haddock (Melanogrammus aeglefinus), saithe (Pollachius virens), witch flounder (Glyptocephalus cynoglossus), and lemon sole (Microstomus kitt) and quantified the extent to which behavioural responses set limits for the large mesh panel's selective efficiency. Around 85% of saithe, 80% of haddock, 44% of witch flounder, 55% of lemon sole, and 55% of cod (below 68 cm) contacted the large mesh panel and escaped. We also demonstrated the need to account for potential selectivity in the trawl body, as it can bias the assessment of length-based escape behaviour. Our indirect assessment of fish behaviour was in agreement with the direct observations made for the same species in a similar section of the trawl body reported in the literature

Multiphase modelling of tumour growth and extracellular matrix interaction: mathematical tools and applications

Resorting to a multiphase modelling framework, tumours are described here as a mixture of tumour and host cells within a porous structure constituted by a remodelling extracellular matrix (ECM), which is wet by a physiological extracellular fluid. The model presented in this article focuses mainly on the description of mechanical interactions of the growing tumour with the host tissue, their influence on tumour growth, and the attachment/detachment mechanisms between cells and ECM. Starting from some recent experimental evidences, we propose to describe the interaction forces involving the extracellular matrix via some concepts coming from viscoplasticity. We then apply the model to the description of the growth of tumour cords and the formation of fibrosis

Fungsi Sosiologis Undang-undang Dasar Negara Republik Indonesia Tahun 1945 Dalam Memenuhi Hak-hak Masyarakat

Constitution is a binding social contract between government and citizen. Their relationships figure the rights of the society. These rightsbecome the tool of society to participate in making government policy, to control the governmentand to avoid the practice of absolutpower.Therefore, the 1945 Indonesian Constitution regulates the norms of rights of society. The functions of the rights are to up hold society justice as well as to create society welfare. The regulation of rights of society in Indonesian Constitution indicates itssociological function.It accommodates the right of society in its relationship between government and citizen

Analysis, assessment, and improvement of fertilizer distribution in pressure irrigation systems

[EN] The transformation of traditional irrigation systems into pressure irrigation networks allows water users associations to use central fertigation systems. For efficient fertigation management, however, it is essential to obtain uniform distribution of the injected fertilizer through the system and to understand the hydraulic processes that take place in the central fertigation system. This will allow users to implement strategies that improve fertilizer distribution. In this work we develop a new methodology to improve fertilizer distribution uniformity and apply it to a case study. The results show how fertilizer distribution can be improved by means of proper scheduling of irrigation deliveries. The best results are obtained when fertigating sectors operate without non-fertigating sectors and there are not intermediate irrigations without fertilizer, achieving an improvement of the fertilizer distribution of 10.5%. In addition, this work highlights the difficulties of obtaining uniform distribution of fertilizer in a centralized irrigation system when there are users that do not want to make use of it.Jiménez Bello, MA.; Martínez Alzamora, F.; Bou Soler, V.; Bartolín Ayala, HJ. (2010). Analysis, assessment, and improvement of fertilizer distribution in pressure irrigation systems. Irrigation Science. 29(1):45-53. doi:10.1007/s00271-010-0215-7S4553291Arviza J y Balbastre I (2002a) “Redes de Riego a presión. Consideraciones sobre la fertirrigación colectiva”. Revista Levante Agrícola nº 359. 1º trimestre. Págs. 70–81. Ediciones y promociones LAV SL. ValenciaArviza J y Balbastre I (2002b) “Redes de Riego a presión. Consideraciones sobre la fertirrigación colectiva. Parte II”. Revista Levante Agrícola nº 360. 2º trimestre. Págs. 133–139. Ediciones y promociones LAV SL. ValenciaArviza J, Martínez F, y Balbastre I (2002) Análisis de la distribución de fertilizantes en sistemas colectivos de riego a presión. XX Congreso Nacional de Riegos. Ciudad Real. EspañaBracy RP, Parish RL, Rosendale RM (2003) Fertigation uniformity affected by injector type. Horttechnology 13:103–105Goldberg DE (1989) Genetic algorithms in search, optimization and machine learning. Addison-Wesley, ReadingJiménez MA, Martínez F, Arviza J, Manzano J (2006) Herramientas para el uso racional del agua con el apoyo de un GIS (HuraGIS). XXIV. Congreso nacional de riegos. Lugo (Spain). (Jun 2006)Jiménez MA, Martínez F, Arviza J, Manzano J (2008) Optimización de la sectorización de redes de riego a presión mediante algoritmos genéticos XXVI. Congreso nacional de riegos. Huesca. (Jun 2008)Jiusheng L, Yibin M, Bei L (2007) Field evaluation of fertigation uniformity as affected by injector type and manufacturing variability of emitters. Irrigation Sci 25:117–125Kalyanmoy D (2001) Multi-objective optimization using evolutionary algorithms. Willey, EnglandRossman LA (2000) Epanet 2, Users Manual. Water Supply and Water Resources Division. National Risk Management Research Laboratory, CincinnatiSavic D, Walters G (1997) Genetic algorithms for least-cost design of water distribution networks. J Water Resour Plann Manag 123(2):67–77 (March/April 1997

MYOD-1 in normal colonic mucosa : role as a putative biomarker?

Background DNA methylation of promoter-associated CpG islands of certain genes may play a role in the development of colorectal cancer. The MYOD-1 gene which is a muscle differentiation gene has been showed to be significantly methylated in colorectal cancer which, is an age related event. However the role of this gene in the colonic mucosa is not understood and whether methylation occurs in subjects without colon cancer. In this study, we have determined the frequency of methylation of the MYOD-1 gene in normal colonic mucosa and investigated to see if this is associated with established colorectal cancer risk factors primarily ageing. Results We analysed colonic mucosal biopsies in 218 normal individuals and demonstrated that in most individuals promoter hypermethylation was not quantified for MYOD-1. However, promoter hypermethylation increased significantly with age (p < 0.001 using regression analysis) and this was gender independent. We also showed that gene promoter methylation increased positively with an increase in waist to hip (WHR) ratio – the latter is also a known risk factor for colon cancer development. Conclusions Our study suggests that promoter gene hypermethylation of the MYOD-1 gene increases significantly with age in normal individuals and thus may offer potential as a putative biomarker for colorectal cancer

Social, environmental and psychological factors associated with objective physical activity levels in the over 65s

Objective: To assess physical activity levels objectively using accelerometers in community dwelling over 65 s and to examine associations with health, social, environmental and psychological factors. Design: Cross sectional survey. Setting: 17 general practices in Scotland, United Kingdom. Participants: Random sampling of over 65 s registered with the practices in four strata young-old (65–80 years), old-old (over 80 years), more affluent and less affluent groups. Main Outcome Measures: Accelerometry counts of activity per day. Associations between activity and Theory of Planned Behaviour variables, the physical environment, health, wellbeing and demographic variables were examined with multiple regression analysis and multilevel modelling. Results: 547 older people (mean (SD) age 79(8) years, 54% female) were analysed representing 94% of those surveyed. Accelerometry counts were highest in the affluent younger group, followed by the deprived younger group, with lowest levels in the deprived over 80 s group. Multiple regression analysis showed that lower age, higher perceived behavioural control, the physical function subscale of SF-36, and having someone nearby to turn to were all independently associated with higher physical activity levels (R2 = 0.32). In addition, hours of sunshine were independently significantly associated with greater physical activity in a multilevel model. Conclusions: Other than age and hours of sunlight, the variables identified are modifiable, and provide a strong basis for the future development of novel multidimensional interventions aimed at increasing activity participation in later life.Publisher PDFPeer reviewe