51 research outputs found

    The gating mechanism in cyclic nucleotide-gated ion channels

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    Cyclic nucleotide-gated (CNG) channels mediate transduction in several sensory neurons. These channels use the free energy of CNs' binding to open the pore, a process referred to as gating. CNG channels belong to the superfamily of voltage-gated channels, where the motion of the \uce\ub1-helix S6 controls gating in most of its members. To date, only the open, cGMP-bound, structure of a CNG channel has been determined at atomic resolution, which is inadequate to determine the molecular events underlying gating. By using electrophysiology, site-directed mutagenesis, chemical modification, and Single Molecule Force Spectroscopy, we demonstrate that opening of CNGA1 channels is initiated by the formation of salt bridges between residues in the C-linker and S5 helix. These events trigger conformational changes of the \uce\ub1-helix S5, transmitted to the P-helix and leading to channel opening. Therefore, the superfamily of voltage-gated channels shares a similar molecular architecture but has evolved divergent gating mechanisms

    ΠŸΡ€ΠΎΡ†Π΅ΡΡ Π°Π½Π°Π»ΠΈΠ·Π° ΡƒΠ³Ρ€ΠΎΠ·, Π²Π»ΠΈΡΡŽΡ‰ΠΈΡ… Π½Π° ΡΠΊΠΎΠ½ΠΎΠΌΠΈΡ‡Π΅ΡΠΊΡƒΡŽ ΡƒΡΡ‚ΠΎΠΉΡ‡ΠΈΠ²ΠΎΡΡ‚ΡŒ прСдприятия

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    На основании ΠΏΡ€ΠΎΠ²Π΅Π΄Π΅Π½Π½ΠΎΠ³ΠΎ исслСдования Π±Ρ‹Π»ΠΈ выявлСны Ρ„Π°ΠΊΡ‚ΠΎΡ€Ρ‹ возникновСния ΡƒΠ³Ρ€ΠΎΠ·, ΠΈΡ… Π³Ρ€ΡƒΠΏΠΏΠΈΡ€ΠΎΠ²ΠΊΠ° ΠΏΠΎ стСпСни Π²ΠΎΠ·Π΄Π΅ΠΉΡΡ‚Π²ΠΈΡŽ Π½Π° ΡΠΊΠΎΠ½ΠΎΠΌΠΈΡ‡Π΅ΡΠΊΡƒΡŽ ΡƒΡΡ‚ΠΎΠΉΡ‡ΠΈΠ²ΠΎΡΡ‚ΡŒ прСдприятий ΠΈ рассмотрСна формализация процСсса Π°Π½Π°Π»ΠΈΠ·Π° ΡƒΠ³Ρ€ΠΎΠ· экономичСской устойчивости прСдприятий. Π’ условиях Ρ€Ρ‹Π½ΠΎΡ‡Π½ΠΎΠΉ экономики Π½Π΅Π²ΠΎΠ·ΠΌΠΎΠΆΠ½ΠΎ ΡƒΠΏΡ€Π°Π²Π»ΡΡ‚ΡŒ прСдприятиСм Π±Π΅Π· ΡƒΡ‡Π΅Ρ‚Π° влияния ΡƒΠ³Ρ€ΠΎΠ·, Π° для эффСктивного управлСния Π²Π°ΠΆΠ½ΠΎ Π½Π΅ Ρ‚ΠΎΠ»ΡŒΠΊΠΎ Π·Π½Π°Ρ‚ΡŒ ΠΎΠ± ΠΈΡ… присутствии, Π° ΠΈ ΠΏΡ€Π°Π²ΠΈΠ»ΡŒΠ½ΠΎ ΠΈΠ΄Π΅Π½Ρ‚ΠΈΡ„ΠΈΡ†ΠΈΡ€ΠΎΠ²Π°Ρ‚ΡŒ ΠΊΠΎΠ½ΠΊΡ€Π΅Ρ‚Π½ΡƒΡŽ ΡƒΠ³Ρ€ΠΎΠ·Ρƒ.На підставі ΠΏΡ€ΠΎΠ²Π΅Π΄Π΅Π½ΠΎΠ³ΠΎ дослідТСння Π±ΡƒΠ»ΠΈ виявлСні Ρ‡ΠΈΠ½Π½ΠΈΠΊΠΈ виникнСння Π·Π°Π³Ρ€ΠΎΠ·, Ρ—Ρ… угруповання ΠΏΠΎ стСпСні Π²ΠΏΠ»ΠΈΠ²Ρƒ Π½Π° Π΅ΠΊΠΎΠ½ΠΎΠΌΡ–Ρ‡Π½Ρƒ ΡΡ‚Ρ–ΠΉΠΊΡ–ΡΡ‚ΡŒ підприємств Ρ– розглянута формалізація процСсу Π°Π½Π°Π»Ρ–Π·Ρƒ Π·Π°Π³Ρ€ΠΎΠ· Π΅ΠΊΠΎΠ½ΠΎΠΌΡ–Ρ‡Π½ΠΎΡ— стійкості підприємств. Π’ ΡƒΠΌΠΎΠ²Π°Ρ… Ρ€ΠΈΠ½ΠΊΠΎΠ²ΠΎΡ— Π΅ΠΊΠΎΠ½ΠΎΠΌΡ–ΠΊΠΈ Π½Π΅ΠΌΠΎΠΆΠ»ΠΈΠ²ΠΎ ΠΊΠ΅Ρ€ΡƒΠ²Π°Ρ‚ΠΈ підприємством Π±Π΅Π· вивчСння Π²ΠΏΠ»ΠΈΠ²Ρƒ Π·Π°Π³Ρ€ΠΎΠ·, Π° для Π΅Ρ„Π΅ΠΊΡ‚ΠΈΠ²Π½ΠΎΠ³ΠΎ кСрування Π²Π°ΠΆΠ»ΠΈΠ²ΠΎ Π½Π΅ Ρ‚Ρ–Π»ΡŒΠΊΠΈ Π·Π½Π°Ρ‚ΠΈ ΠΏΡ€ΠΎ Ρ—Ρ… ΠΏΡ€ΠΈΡΡƒΡ‚Π½Ρ–ΡΡ‚ΡŒ, Π° Ρ– ΠΏΡ€Π°Π²ΠΈΠ»ΡŒΠ½ΠΎ Ρ–Π΄Π΅Π½Ρ‚ΠΈΡ„Ρ–ΠΊΡƒΠ²Π°Ρ‚ΠΈ ΠΊΠΎΠ½ΠΊΡ€Π΅Ρ‚Π½Ρƒ Π·Π°Π³Ρ€ΠΎΠ·Ρƒ.On the basis of the conducted research the factors of origin of threats were exposed, their gourmet on a degree to influence on economic stability of enterprises and formalization of process of analysis of threats of economic stability of enterprises is considered. In the conditions of market economy it is impossible to manage an enterprise without taking into account influencing of threats, and for the effective management it is important not only to know about their presence, and to identify the concrete threat correctly

    Lipid-dependent gating of a voltage-gated potassium channel

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    Recent studies hypothesized that phospholipids stabilize two voltage-sensing arginine residues of certain voltage-gated potassium channels in activated conformations. It remains unclear how lipids directly affect these channels. Here, by examining the conformations of the KvAP in different lipids, we showed that without voltage change, the voltage-sensor domains switched from the activated to the resting state when their surrounding lipids were changed from phospholipids to nonphospholipids. Such lipid-determined conformational change was coupled to the ion-conducting pore, suggesting that parallel to voltage gating, the channel is gated by its annular lipids. Our measurements recognized that the energetic cost of lipid-dependent gating approaches that of voltage gating, but kinetically it appears much slower. Our data support that a channel and its surrounding lipids together constitute a functional unit, and natural nonphospholipids such as cholesterol should exert strong effects on voltage-gated channels. Our first observation of lipid-dependent gating may have general implications to other membrane proteins

    Role of Lipids in Spheroidal High Density Lipoproteins

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    We study the structure and dynamics of spherical high density lipoprotein (HDL) particles through coarse-grained multi-microsecond molecular dynamics simulations. We simulate both a lipid droplet without the apolipoprotein A-I (apoA-I) and the full HDL particle including two apoA-I molecules surrounding the lipid compartment. The present models are the first ones among computational studies where the size and lipid composition of HDL are realistic, corresponding to human serum HDL. We focus on the role of lipids in HDL structure and dynamics. Particular attention is paid to the assembly of lipids and the influence of lipid-protein interactions on HDL properties. We find that the properties of lipids depend significantly on their location in the particle (core, intermediate region, surface). Unlike the hydrophobic core, the intermediate and surface regions are characterized by prominent conformational lipid order. Yet, not only the conformations but also the dynamics of lipids are found to be distinctly different in the different regions of HDL, highlighting the importance of dynamics in considering the functionalization of HDL. The structure of the lipid droplet close to the HDL-water interface is altered by the presence of apoA-Is, with most prominent changes being observed for cholesterol and polar lipids. For cholesterol, slow trafficking between the surface layer and the regimes underneath is observed. The lipid-protein interactions are strongest for cholesterol, in particular its interaction with hydrophobic residues of apoA-I. Our results reveal that not only hydrophobicity but also conformational entropy of the molecules are the driving forces in the formation of HDL structure. The results provide the first detailed structural model for HDL and its dynamics with and without apoA-I, and indicate how the interplay and competition between entropy and detailed interactions may be used in nanoparticle and drug design through self-assembly

    A bridge between worlds: understanding network structure to understand change strategy

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    A number of scholars are exploring district and site relations in organizational change efforts in the larger policy context of No Child Left Behind. These studies suggest the importance of the central office as a support to the work of reform and offer strategies for building relations between district offices and sites in order to implement and sustain change efforts. What is frequently overlooked in these studies is that organizational change efforts are often socially constructed. Therefore, examining the underlying social networks may provide insight into structures that support or constrain efforts at change. This exploratory case study uses social network analysis and interviews to examine the communication and knowledge network structures of central office and site leaders in an β€˜in need of improvement’ district facing sanctions under No Child Left Behind. Findings indicate sparse ties among and between school site and central office administrators, as well as a centralized network structure that may constrain the exchange of complex information and ultimately inhibit efforts at change

    DNA primase acts as a molecular brake in DNA replication

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    A hallmark feature of DNA replication is the coordination between the continuous polymerization of nucleotides on the leading strand and the discontinuous synthesis of DNA on the lagging strand(1). This synchronization requires a precisely timed series of enzymatic steps that control the synthesis of an RNA primer, the recycling of the lagging-strand DNA polymerase, and the production of an Okazaki fragment. Primases synthesize RNA primers at a rate that is orders of magnitude lower(2-4) than the rate of DNA synthesis by the DNA polymerases at the fork. Furthermore, the recycling of the lagging-strand DNA polymerase from a finished Okazaki fragment to a new primer is inherently slower than the rate of nucleotide polymerization(5). Different models have been put forward to explain how these slow enzymatic steps can take place at the lagging strand without losing coordination with the continuous and fast leading-strand synthesis(6-8). Nonetheless, a clear picture remains elusive. Here we use single-molecule techniques to study the kinetics of a multiprotein replication complex from bacteriophage T7 and to characterize the effect of primase activity on fork progression. We observe the synthesis of primers on the lagging strand to cause transient pausing of the highly processive leading-strand synthesis. In the presence of both leading- and lagging-strand synthesis, we observe the formation and release of a replication loop on the lagging strand. Before loop formation, the primase acts as a molecular brake and transiently halts progression of the replication fork. This observation suggests a mechanism that prevents leading- strand synthesis from outpacing lagging-strand synthesis during the slow enzymatic steps on the lagging strand.X11184182sciescopu
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