One hundred and thirty-five years of avifaunal surveys around Santarém, central Brazilian Amazon

We present an updated annotated avifaunal checklist for the Santarém region of central Pará state, Brazil, an area that has one of the oldest histories of ornithological exploration in South America. We combine data from a fivemonth quantitative survey of the birds of the municipalities of Santarém and Belterra (east of the Tapajós River) between 2010 and 2011 with an exhaustive search of material in museum collections worldwide and digital vouchers deposited online. Our own survey sampled habitats across a gradient of disturbance ranging from 'undisturbed' primary forest, through logged and burnt forest, patches of secondary forest, cattle pastures and intensive mechanized agriculture. Given the potential for species misidentifications in avian inventories, we paid special attention to obtaining voucher documentation. Here we present a collection of publicly accessible digital vouchers for all of the new species, in addition to providing museum catalogue numbers for all old records. We added 24 species to the regional list, principally species associated with anthropogenic land-uses, but also including seven species restricted to primary forest habitats which were missed from both recent published inventories and over the course of two centuries of intensive collecting efforts. The regional list now stands at 583 species for which voucher documentation is available, with an additional 26 undocumented species. Many of the species reported here are poorly known or represent notable range extensions, and we present new data on their status and distribution

Abundância de gavião-real e gavião-real falso numa área sob impacto de reservatório no Baixo e Médio rio Xingu

In the Brazilian Amazon, two monospecific genera, the Harpy Eagle and Crested Eagle have low densities and are classified by IUCN as Near Threatened due to habitat loss, deforestation, habitat degradation and hunting. In this study, we evaluate occurrence of these large raptors using the environmental surveys database from Belo Monte Hydroelectric Power Plant. Integrating the dataset from two methods, we plotted a distribution map along the Xingu River, including records over a 276-km stretch of river. Terrestrial surveys (RAPELD method) were more efficient for detecting large raptors than standardized aquatic surveys, although the latter were complementary in areas without modules. About 53% of the records were obtained during activities of wildlife rescue/flushing, vegetation suppression or in transit. Between 2012 and 2014, four Harpy Eagles were removed from the wild; two shooting victims, one injured by collision with power lines and one hit by a vehicle. Also, seven nests were mapped. The mean distance between Harpy Eagle records was 15 km along the river channel, with a mean of 20 km between nests near the channel, which allowed us to estimate 20 possible pairs using the alluvial forest, riverine forest and forest fragments. Territories of another ten pairs will probably be affected by inundation of the Volta Grande channel, which is far from the main river. The average distance between Crested Eagle records was 16 km along the river channel. The only nest found was 1.3 km away from a Harpy Eagle nest. The remnant forests are under threat of being replaced by cattle pastures, so we recommend that permanently protected riparian vegetation borders (APP) be guaranteed, and that forest fragments within 5 km of the river be conserved to maintain eagle populations. © 2015, Instituto Internacional de Ecologia. All rights reserved

Table A2

Pairs were considered ‘in contact’ when i) specimens or field observations documented both taxa to occur in syntopy (actual contact), ii) both taxa were found at nearby localities (< 20 km) in a continuous habitat (virtual contact), or iii) phenotypically intermediate birds (i.e., birds with intermediate plumage patterns or coloration, suggesting hybridization) were reported in the literature or found in ornithological collections. For those intermediate-looking specimens found in collections, we restricted our analyses to areas located in the geographically intervening regions between two taxa ranges (parapatric contact zones)

Data from: The role of physical barriers in the location of avian suture zones in the Guiana Shield, northern Amazonia

Suture zones represent natural forums to examine the role of geography and ecology in the speciation process. Here, we conduct a comparative analysis designed to investigate the location of avian phylogeographic breaks and contact zones in the Guiana Shield, northern Amazonia. We use distributional and genetic data from 78 pairs of avian taxa to address whether phylogeographic breaks and contact zones are associated with contemporary landscape features. Using spatially explicit statistical models, we found that phylogeographic breaks and contact zones are not randomly distributed throughout the landscape. In general, geographic breaks cluster along physical barriers (rivers, non-forested habitats, and small mountain ranges), whereas contact zones aggregate where these barriers either break down or are easier to overcome, such as around rivers' headwaters. Our results indicate that although major Amazonian rivers are often key determinants of taxon boundaries, the 'riverine barrier effect' is a synergistic consequence of the wide lower reaches of some rivers, coupled with non-riverine landscape features at the headwaters. Our data suggest that ancestral refugia are not necessary to explain current distribution patterns and that pairs of co-distributed taxa do not seem to be the result of simultaneous diversification processes

Prevention of Colorectal Neoplasia

Colorectal cancer (CRC) is one of the leading causes of cancer-related morbidity and mortality worldwide. There are well-established screening protocols involving fecal testing, radiographic, and endoscopic evaluations that have led to decreased incidence and mortality of CRC in the United States. In addition to screening for CRC, there is interest in preventing colorectal neoplasia by targeting the signaling pathways that have been identified in the pathway of dysplasia progressing to carcinoma. This review will detail the efficacy of multiple potential preventative strategies including lifestyle changes (physical activity, alcohol use, smoking cessation, and obesity); dietary factors (dietary patterns, calcium, vitamin D, fiber, folate, and antioxidants and micronutrients); and chemopreventive agents (nonsteroidal anti-inflammatory drugs, statins, metformin, bisphosphonates, and postmenopausal hormonal therapy)

Table A2

Pairs were considered ‘in contact’ when i) specimens or field observations documented both taxa to occur in syntopy (actual contact), ii) both taxa were found at nearby localities (< 20 km) in a continuous habitat (virtual contact), or iii) phenotypically intermediate birds (i.e., birds with intermediate plumage patterns or coloration, suggesting hybridization) were reported in the literature or found in ornithological collections. For those intermediate-looking specimens found in collections, we restricted our analyses to areas located in the geographically intervening regions between two taxa ranges (parapatric contact zones)

Data from: The role of physical barriers in the location of avian suture zones in the Guiana Shield, northern Amazonia

Suture zones represent natural forums to examine the role of geography and ecology in the speciation process. Here, we conduct a comparative analysis designed to investigate the location of avian phylogeographic breaks and contact zones in the Guiana Shield, northern Amazonia. We use distributional and genetic data from 78 pairs of avian taxa to address whether phylogeographic breaks and contact zones are associated with contemporary landscape features. Using spatially explicit statistical models, we found that phylogeographic breaks and contact zones are not randomly distributed throughout the landscape. In general, geographic breaks cluster along physical barriers (rivers, non-forested habitats, and small mountain ranges), whereas contact zones aggregate where these barriers either break down or are easier to overcome, such as around rivers' headwaters. Our results indicate that although major Amazonian rivers are often key determinants of taxon boundaries, the 'riverine barrier effect' is a synergistic consequence of the wide lower reaches of some rivers, coupled with non-riverine landscape features at the headwaters. Our data suggest that ancestral refugia are not necessary to explain current distribution patterns and that pairs of co-distributed taxa do not seem to be the result of simultaneous diversification processes

Appendix_List of samples and accession numbers

Appendix_List of samples and accession number

One hundred and thirty-five years of avifaunal surveys around Santarem, central Brazilian Amazon

We present an updated annotated avifaunal checklist for the Santarem region of central Para state, Brazil, an area that has one of the oldest histories of ornithological exploration in South America. We combine data from a five-month quantitative survey of the birds of the municipalities of Santarem and Belterra (east of the Tapajos River) between 2010 and 2011 with an exhaustive search of material in museum collections worldwide and digital vouchers deposited online. Our own survey sampled habitats across a gradient of disturbance ranging from 'undisturbed' primary forest, through logged and burnt forest, patches of secondary forest, cattle pastures and intensive mechanized agriculture. Given the potential for species misidentifications in avian inventories, we paid special attention to obtaining voucher documentation. Here we present a collection of publicly accessible digital vouchers for all of the new species, in addition to providing museum catalogue numbers for all old records. We added 24 species to the regional list, principally species associated with anthropogenic land-uses, but also including seven species restricted to primary forest habitats which were missed from both recent published inventories and over the course of two centuries of intensive collecting efforts. The regional list now stands at 583 species for which voucher documentation is available, with an additional 26 undocumented species. Many of the species reported here are poorly known or represent notable range extensions, and we present new data on their status and distribution