Flowering, germination and rooting of cuttings of Lippia L. (Verbenaceae)

Lippia species from Cadeia do Espinhaço (MG, Brazil), were collected and established at the Botanical Experimental Station, Juiz de Fora, MG. The flowering of plants was evaluated in both natural and controlled conditions. Germination test was accomplished with seeds obtained from natural conditions. The rooting of cuttings was evaluated in plants cultivated in the Botanical Experimental Station. The majority of species blossomed either in the dry or in the rainy seasons. Only one species blooms in both seasons. At controlled conditions, the flowering period increased in species that flourish in the summer. Some species presented better germination with fresh collected seeds while others when the seeds were stored, evidencing both viability loss and seed dormancy. GA3 stimulates the germination in some species, while it inhibited or not influenced on others. Some species germinate better in the darkness, while others under white light. Some of them germinate in the light or in the darkness. Adventitious roots formation in cuttings of wild species was very low and did not vary in response to season variation and auxin concentration. On the other hand, rooting of cuttings of L. alba (Mill.) N.E. Br. varied in response both to season variation and to auxin types and concentration. This is the first report on physiological reproductive aspects of endemic Lippia species from the Cadeia do Espinhaço. The results indicate the possibility to use seeds in the propagation of wild Lippia species and, they also show that reproduction through conventional vegetative propagation techniques presents quite reduced efficiency.Plantas de dez espécies de Lippia foram coletadas na Cadeia do Espinhaço, MG, Brasil e cultivadas em canteiros em Juiz de Fora, MG. A época de florescimento das espécies de Lippia foi observada nos ambientes de origem e em canteiro. A germinação foi testada com sementes coletadas em ambiente natural. Os materiais estabelecidos ex situ foram avaliados quanto ao enraizamento de estacas. As análises das plantas em ambiente natural e das cultivadas em canteiro evidenciaram que a maioria das espécies estudadas apresenta floração no período seco (inverno), enquanto um menor número, no chuvoso (verão). Uma única espécie floresceu nessas duas estações. Em cultivo controlado, o período de floração das espécies com floração característica no verão foi aumentado. Algumas espécies germinaram melhor quando recém coletadas enquanto outras quando armazenadas, evidenciando a ocorrência de perda de viabilidade e de dormência. O GA3 estimulou a germinação em algumas espécies, enquanto inibiu ou não apresentou efeitos sobre outras. Sementes de algumas espécies germinaram melhor no escuro, enquanto de outras sob luz branca, existindo ainda espécies que germinaram tanto na luz quanto no escuro. O enraizamento das estacas das espécies não domesticadas de Lippia foi muito baixo, independente da estação do ano e da concentração da auxina. O enraizamento em estacas de L. alba (Mill.) N.E. Br. variou em resposta à época de coleta das estacas e quanto ao tipo e à concentração das auxinas utilizadas. Os resultados do presente trabalho constituem os primeiros relatos envolvendo a reprodução de espécies de Lippia endêmicas da Cadeia do Espinhaço. Eles indicam a possibilidade de utilização das sementes na propagação das plantas desse gênero e também evidenciam que a reprodução das plantas das espécies não domesticadas de Lippia através de técnicas convencionais de propagação assexuada apresenta eficiência bastante reduzida

The molecular chaperone binding protein BiP prevents leaf dehydration-induced cellular homeostasis disruption

BiP overexpression improves leaf water relations during droughts and delays drought-induced leaf senescence. However, whether BiP controls cellular homeostasis under drought conditions or simply delays dehydration-induced leaf senescence as the primary cause for water stress tolerance remains to be determined. To address this issue, we examined the drought-induced transcriptomes of BiP-overexpressing lines and wild-type (WT) lines under similar leaf water potential (ψw) values. In the WT leaves, a ψw reduction of −1.0 resulted in 1339 up-regulated and 2710 down-regulated genes; in the BiP-overexpressing line 35S::BiP-4, only 334 and 420 genes were induced and repressed, respectively, at a similar leaf ψw = −1.0 MPa. This level of leaf dehydration was low enough to induce a repertory of typical drought-responsive genes in WT leaves but not in 35S::BiP-4 dehydrated leaves. The responders included hormone-related genes, functional and regulatory genes involved in drought protection and senescence-associated genes. The number of differentially expressed genes in the 35S::BiP-4 line approached the wild type number at a leaf ψw = −1.6 MPa. However, N-rich protein (NRP)- mediated cell death signaling genes and unfolded protein response (UPR) genes were induced to a much lower extent in the 35S::BiP-4 line than in the WT even at ψw = −1.6 MPa. The heatmaps for UPR, ERAD (ER-associated degradation protein system), drought-responsive and cell death-associated genes revealed that the leaf transcriptome of 35S::BiP-4 at ψw = −1.0 MPa clustered together with the transcriptome of well-watered leaves and they diverged considerably from the drought-induced transcriptome of the WT (ψw = −1.0, −1.7 and −2.0 MPa) and 35S::BiP-4 leaves at ψw = −1.6 MPa. Taken together, our data revealed that BiP-overexpressing lines requires a much higher level of stress (ψw = −1.6 MPa) to respond to drought than that of WT (ψw = −1.0). Therefore, BiP overexpression maintains cellular homeostasis under water stress conditions and thus ameliorates endogenous osmotic stress

Data from: Repeat variants for the SbMATE transporter protect sorghum roots from aluminum toxicity by transcriptional interplay in cis and trans

Acidic soils, where aluminum (Al) toxicity is a major agricultural constraint, are globally widespread and are prevalent in developing countries. In sorghum, the root citrate transporter SbMATE confers Al tolerance by protecting root apices from toxic Al3+, but can exhibit reduced expression when introgressed into different lines. We show that allele-specific SbMATE transactivation occurs and is caused by factors located away from SbMATE. Using expression-QTL mapping and -GWAS, we establish that SbMATE transcription is controlled in a bipartite fashion, primarily in cis but also in trans. Multi-allelic promoter transactivation and ChIP analyses demonstrated that intermolecular effects on SbMATE expression arise from a WRKY and a zinc finger-DHHC transcription factor (TF) that bind to and trans-activate the SbMATE promoter. A haplotype analysis in sorghum RILs indicate that the TFs influence SbMATE expression and Al tolerance. Variation in SbMATE expression likely results from changes in tandemly repeated cis sequences flanking a transposable element (MITE) insertion in the SbMATE promoter, which are recognized by the Al3+-responsive TFs. According to our model, repeat expansion in Al-tolerant genotypes increases TF recruitment and, hence, SbMATE expression, which is, in turn, lower in Al-sensitive genetic backgrounds due to lower TF expression and fewer binding sites. We thus show that even dominant cis regulation of an agronomically-important gene can be subjected to precise intermolecular fine-tuning. These concerted cis/trans interactions, which allow the plant to sense and respond to environmental cues, such as Al3+ toxicity, can now be used to increase yields and food security on acidic soils

Melo et al_2018_PNAS_QTL-GWAS dataset

This dataset includes SNP physical positions (pos in bp, v1.4 of the sorghum genome) and association P-values with Al tolerance (RNRG) and SbMATE expression (RQ) obtained from biparental mapping (QTL) and genome wide association mapping (GWAS) (Fig. 2). Data was generated with TASSEL. Quantitative trait mapping in recombinant inbred lines: QTL.csv. Genome wide association mapping: GWAS.csv. Al tolerance was measured as RNRG: relative net root growth (see supplementary methods) SbMATE expression: RQ - relative quantification using the ddCt method (see supplementary methods)

Repeat variants for the SbMATE transporter protect sorghum roots from aluminum toxicity by transcriptional interplay in cis and trans

Acidic soils, where aluminum (Al) toxicity is a major agricultural constraint, are globally widespread and are prevalent in developing countries. In sorghum, the root citrate transporter SbMATE confers Al tolerance by protecting root apices from toxic Al3+, but can exhibit reduced expression when introgressed into different lines. We show that allele-specific SbMATE transactivation occurs and is caused by factors located away from SbMATE. Using expression-QTL mapping and expression genome-wide association mapping, we establish that SbMATE transcription is controlled in a bipartite fashion, primarily in cis but also in trans. Multiallelic promoter transactivation and ChIP analyses demonstrated that intermolecular effects on SbMATE expression arise from a WRKY and a zinc finger-DHHC transcription factor (TF) that bind to and trans-activate the SbMATE promoter. A haplotype analysis in sorghum RILs indicates that the TFs influence SbMATE expression and Al tolerance. Variation in SbMATE expression likely results from changes in tandemly repeated cis sequences flanking a transposable element (a miniature inverted repeat transposable element) insertion in the SbMATE promoter, which are recognized by the Al3+-responsive TFs. According to our model, repeat expansion in Al-tolerant genotypes increases TF recruitment and, hence, SbMATE expression, which is, in turn, lower in Al-sensitive genetic backgrounds as a result of lower TF expression and fewer binding sites. We thus show that even dominant cis regulation of an agronomically important gene can be subjected to precise intermolecular fine-tuning. These concerted cis/trans interactions, which allow the plant to sense and respond to environmental cues, such as Al3+ toxicity, can now be used to increase yields and food security on acidic soils

Repeat variants for the SbMATE transporter protect sorghum roots from aluminum toxicity by transcriptional interplay in cis

Acidic soils, where aluminum (Al) toxicity is a major agricultural constraint, are globally widespread and are prevalent in developing countries. In sorghum, the root citrate transporter SbMATE confers Al tolerance by protecting root apices from toxic Al3+, but can exhibit reduced expression when introgressed into different lines. We show that allele-specific SbMATE transactivation occurs and is caused by factors located away from SbMATE. Using expression-QTL mapping and expression genome-wide association mapping, we establish that SbMATE transcription is controlled in a bipartite fashion, primarily in cis but also in trans. Multiallelic promoter transactivation and ChIP analyses demonstrated that intermolecular effects on SbMATE expression arise from a WRKY and a zinc finger-DHHC transcription factor (TF) that bind to and trans-activate the SbMATE promoter. A haplotype analysis in sorghum RILs indicates that the TFs influence SbMATE expression and Al tolerance. Variation in SbMATE expression likely results from changes in tandemly repeated cis sequences flanking a transposable element (a miniature inverted repeat transposable element) insertion in the SbMATE promoter, which are recognized by the Al3+-responsive TFs. According to our model, repeat expansion in Al-tolerant genotypes increases TF recruitment and, hence, SbMATE expression, which is, in turn, lower in Al-sensitive genetic backgrounds as a result of lower TF expression and fewer binding sites. We thus show that even dominant cis regulation of an agronomically important gene can be subjected to precise intermolecular fine-tuning. These concerted cis/trans interactions, which allow the plant to sense and respond to environmental cues, such as Al3+ toxicity, can now be used to increase yields and food security on acidic soils

Heatmap of ERAD genes.

<p>The data presented in the figure comprise a microarray measurement of well-watered and stressed leaves (with different leaf water potential) from WT and 35S::BiP-4 plants under progressive drought.</p

Drought-induced leaf dehydration in soybean transgenic and WT lines.

<p>(A) Drought stress was induced by reducing irrigation to 40% of the daily normal water supply. Leaf water potential was measured by using a Scholander pump. The leaf ψ_w of stressed wild-type plants declined to a maximum stress of −2.0 MPa, whereas the leaf ψ_w of transgenic plants did not decrease below −1.5 MPa. The bars represent confidence intervals (p≤0.05, n = 4). (B) Leaves were photographed on day 19 of the experiment, when 35S::BiP-4 and 35S::BiP-2 leaves displayed ψw = −0.6 MPa, whereas WT leaves presented a ψw = −1.0 MPa.</p