Dissimilatory sulfate reduction in the archaeon ‘Candidatus Vulcanisaeta moutnovskia’ sheds light on the evolution of sulfur metabolism

Dissimilatory sulfate reduction (DSR)—an important reaction in the biogeochemical sulfur cycle—has been dated to the Palaeoarchaean using geological evidence, but its evolutionary history is poorly understood. Several lineages of bacteria carry out DSR, but in archaea only Archaeoglobus, which acquired DSR genes from bacteria, has been proven to catalyse this reaction. We investigated substantial rates of sulfate reduction in acidic hyperthermal terrestrial springs of the Kamchatka Peninsula and attributed DSR in this environment to Crenarchaeota in the Vulcanisaeta genus. Community profiling, coupled with radioisotope and growth experiments and proteomics, confirmed DSR by ‘Candidatus Vulcanisaeta moutnovskia’, which has all of the required genes. Other cultivated Thermoproteaceae were briefly reported to use sulfate for respiration but we were unable to detect DSR in these isolates. Phylogenetic studies suggest that DSR is rare in archaea and that it originated in Vulcanisaeta, independent of Archaeoglobus, by separate acquisition of qmoABC genes phylogenetically related to bacterial hdrA genes.This work was supported by the Russian Science Foundation (grant number 17-74-30025) and in part by the grant from the Russian Ministry of Science and Higher Education (to N.A.C., A.V.L., E.N.F., M.L.M., A.Y.M., N.V.P. and E.A.B.-O.). Sequencing of PCR amplicons was performed using the scientific equipment of the core research facility ‘Bioengineering’ by T. Kolganova. The proteomics analysis was performed at the Proteomics Facility of the Spanish National Center for Biotechnology (CNB-CSIC), which belongs to ProteoRed, PRB2-ISCIII, supported by grant PT13/0001 (to S.C., M.C.M. and M.F.). P.N.G. acknowledges funding from the UK Biotechnology and Biological Sciences Research Council (BBSRC) within the ERA NET-IB2 programme, grant number ERA-IB-14-030 and the European Union Horizon 2020 Research and Innovation programme (Blue Growth: Unlocking the Potential of Seas and Oceans) under grant agreement number 634486, as well as support from the Centre for Environmental Biotechnology project, part funded by the European Regional Development Fund (ERDF) through the Welsh Government, and support from the Centre of Environmental Biotechnology. D.Y.S. was supported by the SIAM/Gravitation Program (Dutch Ministry of Education, Culture and Science; grant 24002002) and RFBR grant 19-04-00401. F.L.S. and S.N. acknowledge support from the Wiener Wissenschafts, Forschungs- und Technologiefonds (Austria) through the grant VRG15-007. F.L.S. gratefully acknowledges funding from the European Research Council (ERC) under the European Union’s Horizon 2020 Research and Innovation programme (grant agreement 803768). I.A.C.P. acknowledges support from the Fundação para a Ciência e Tecnologia (Portugal) through grant PTDC/BIA-BQM/29118/2017 and R&D unit MOSTMICRO-ITQB (UIDB/04612/2020 and UIDP/04612/2020)

Fano resonances in plasmonic core-shell particles and the Purcell effect

Despite a long history, light scattering by particles with size comparable with the light wavelength still unveils surprising optical phenomena, and many of them are related to the Fano effect. Originally described in the context of atomic physics, the Fano resonance in light scattering arises from the interference between a narrow subradiant mode and a spectrally broad radiation line. Here, we present an overview of Fano resonances in coated spherical scatterers within the framework of the Lorenz-Mie theory. We briefly introduce the concept of conventional and unconventional Fano resonances in light scattering. These resonances are associated with the interference between electromagnetic modes excited in the particle with different or the same multipole moment, respectively. In addition, we investigate the modification of the spontaneous-emission rate of an optical emitter at the presence of a plasmonic nanoshell. This modification of decay rate due to electromagnetic environment is referred to as the Purcell effect. We analytically show that the Purcell factor related to a dipole emitter oriented orthogonal or tangential to the spherical surface can exhibit Fano or Lorentzian line shapes in the near field, respectively.Comment: 28 pages, 10 figures; invited book chapter to appear in "Fano Resonances in Optics and Microwaves: Physics and Application", Springer Series in Optical Sciences (2018), edited by E. O. Kamenetskii, A. Sadreev, and A. Miroshnichenk

Enhanced sensing and conversion of ultrasonic Rayleigh waves by elastic metasurfaces

Recent years have heralded the introduction of metasurfaces that advantageously combine the vision of sub-wavelength wave manipulation, with the design, fabrication and size advantages associated with surface excitation. An important topic within metasurfaces is the tailored rainbow trapping and selective spatial frequency separation of electromagnetic and acoustic waves using graded metasurfaces. This frequency dependent trapping and spatial frequency segregation has implications for energy concentrators and associated energy harvesting, sensing and wave filtering techniques. Different demonstrations of acoustic and electromagnetic rainbow devices have been performed, however not for deep elastic substrates that support both shear and compressional waves, together with surface Rayleigh waves; these allow not only for Rayleigh wave rainbow effects to exist but also for mode conversion from surface into shear waves. Here we demonstrate experimentally not only elastic Rayleigh wave rainbow trapping, by taking advantage of a stop-band for surface waves, but also selective mode conversion of surface Rayleigh waves to shear waves. These experiments performed at ultrasonic frequencies, in the range of 400–600 kHz, are complemented by time domain numerical simulations. The metasurfaces we design are not limited to guided ultrasonic waves and are a general phenomenon in elastic waves that can be translated across scales

Genomic analysis of Caldithrix abyssi, the thermophilic anaerobic bacterium of the novel bacterial phylum Calditrichaeota

The genome of Caldithrix abyssi, the first cultivated representative of a phylum-level bacterial lineage, was sequenced within the framework of Genomic Encyclopedia of Bacteria and Archaea (GEBA) project. The genomic analysis revealed mechanisms allowing this anaerobic bacterium to ferment peptides or to implement nitrate reduction with acetate or molecular hydrogen as electron donors. The genome encoded five different [NiFe]- and [FeFe]-hydrogenases, one of which, group 1 [NiFe]-hydrogenase, is presumably involved in lithoheterotrophic growth, three other produce H2 during fermentation, and one is apparently bidirectional. The ability to reduce nitrate is determined by a nitrate reductase of the Nap family, while nitrite reduction to ammonia is presumably catalyzed by an octaheme cytochrome c nitrite reductase εHao. The genome contained genes of respiratory polysulfide/thiosulfate reductase, however, elemental sulfur and thiosulfate were not used as the electron acceptors for anaerobic respiration with acetate or H2, probably due to the lack of the gene of the maturation protein. Nevertheless, elemental sulfur and thiosulfate stimulated growth on fermentable substrates (peptides), being reduced to sulfide, most probably through the action of the cytoplasmic sulfide dehydrogenase and/or NAD(P)-dependent [NiFe]-hydrogenase (sulfhydrogenase) encoded by the genome. Surprisingly, the genome of this anaerobic microorganism encoded all genes for cytochrome c oxidase, however, its maturation machinery seems to be non-operational due to genomic rearrangements of supplementary genes. Despite the fact that sugars were not among the substrates reported when C. abyssi was first described, our genomic analysis revealed multiple genes of glycoside hydrolases, and some of them were predicted to be secreted. This finding aided in bringing out four carbohydrates that supported the growth of C. abyssi: starch, cellobiose, glucomannan and xyloglucan. The genomic analysis demonstrated the ability of C. abyssi to synthesize nucleotides and most amino acids and vitamins. Finally, the genomic sequence allowed us to perform a phylogenomic analysis, based on 38 protein sequences, which confirmed the deep branching of this lineage and justified the proposal of a novel phylum Calditrichaeota.The work conducted by the U.S. Department of Energy Joint Genome Institute, a DOE Office of Science User Facility, is supported under Contract No. DE-AC02-05CH11231. OS and MSG were supported by the Russian Science Foundation (RSF, grant 14-24-00155). EB-O and SG were supported by the RSF grant 14-24-00165. IK, NC, AL, and MM were supported by the Russian Foundation for Basic Research grant 14-04-00503.http://www.frontiersin.orgam2017Biochemistr

Application efficiency of complex pharmacotherapy schemes at combined mycotoxicosis in young bulls

The article presents data on the study of the effectiveness of tetra-p feed additive and toxin adsorbents Minazel plus and Sorbitox introduced into feed, naturally contaminated with mycotoxins. The experiment was conducted on young bulls of 9 months age, which for 3 months got the preparations in diets in the following concentrations: the first group – tetra-p – 5.0 kg/t of feed, Minazel plus – 1.5 kg/t of feed, the second group – tetra-p – 5.0 kg/t of feed, Sorbitox (1.5 kg/t of feed). The results of the experiment determined that the use of tetra-p in combination with preparations with sorption activity had a pronounced therapeutic effect on the body of young bulls. An improvement in the clinical condition of animals was observed from 14-16 days of the experimental period and was manifested by an increase in appetite, normalization of the gastrointestinal tract, as well as by an increase in body weight gain by 11.7 % and 10.3 %. Blood biochemical parameters were characterized by an increase in the level of total protein by 12.4–15.8 % (p ≤ 0.01), albumin by 18.0–21.3 %, urea by a factor of 1.53–1.44 (p ≥ 0.01), cholesterol by 1.4–1.56 times and triglycerides by 1.6 times. The activity of liver enzymes decreased by 18.3–21.4 % (ALT) and by 25.7–27.1 % (AST). It has been proved that the developed scheme improves the effectiveness of treatment of mycotoxicosis in animals by the optimizing effect on metabolism, restoration of impaired homeostasis, activation of reparative processes of the liver tissue and increased deposition, activation and utilization of pollutants, produced by microscopic fungi

Long-Term Spectroscopic Monitoring and Surveys of Early-Type Stars with and without Circumstellar Envelopes

Ongoing studies of different groups of stars result in improving our knowledge of their fundamental parameters and evolutionary status. Also, they result in finding new phases of stellar evolution, which require theoretical explanation. At the same time, availability of large telescopes and sensitivity improvement of detectors shift the focus of many observational programs toward fainter and more distant objects. However, there are still many problems in our understanding of details of stellar evolution which can now be solved with small telescopes and observations of bright stars. Approaching these problems implies conducting surveys of large groups of stars and long-term monitoring of individual objects. In this talk, we present the results of recent international programs of photometric and spectral monitoring of several groups of early-type stars. In particular, we discuss the role of binarity in creation of the Be phenomenon and show examples of recently discovered binary systems as well as the problem of refining fundamental parameters of B and A type supergiants. Special attention will be paid to collaboration with the amateur community and use of échelle spectrographs mounted on small telescopes

Long-Term spectroscopic monitoring and surveys of early-type stars with and without Circumstellar Envelopes

Ongoing studies of different groups of stars result in improving our knowledge of their fundamental parameters and evolutionary status. Also, they result in finding new phases of stellar evolution, which require theoretical explanation. At the same time, availability of large telescopes and sensitivity improvement of detectors shift the focus of many observational programs toward fainter and more distant objects. However, there are still many problems in our understanding of details of stellar evolution which can now be solved with small telescopes and observations of bright stars. Approaching these problems implies conducting surveys of large groups of stars and long-term monitoring of individual objects. In this talk, we present the results of recent international programs of photometric and spectral monitoring of several groups of early-type stars. In particular, we discuss the role of binarity in creation of the Be phenomenon and show examples of recently discovered binary systems as well as the problem of refining fundamental parameters of B and A type supergiants. Special attention will be paid to collaboration with the amateur community and use of échelle spectrographs mounted on small telescopes.Fil: Miroshnichenko, Anatoly S.. University of North Carolina; Estados UnidosFil: Danford, Steven. University of North Carolina; Estados UnidosFil: Zharikov, Sergei V.. Universidad Nacional Autónoma de México; MéxicoFil: Manset, Nadine. CFHT Corporation; Estados UnidosFil: Levato, Orlando Hugo. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - San Juan. Instituto de Ciencias Astronómicas, de la Tierra y del Espacio. Universidad Nacional de San Juan. Instituto de Ciencias Astronómicas, de la Tierra y del Espacio; ArgentinaFil: Grosso, Monica Gladys. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - San Juan. Instituto de Ciencias Astronómicas, de la Tierra y del Espacio. Universidad Nacional de San Juan. Instituto de Ciencias Astronómicas, de la Tierra y del Espacio; ArgentinaFil: Korčáková, Daniela. Charles University in Prague; República ChecaFil: Kusakin, Anatoly V.. Fesenkov Astrophysical Institute; KazajistánFil: Khokhlov, Serik A.. Fesenkov Astrophysical Institute; KazajistánFil: Prendergast, Peter. Kernersville Observatory; Estados Unido

Genomic Analysis of Caldithrix abyssi, the Thermophilic Anaerobic Bacterium of the Novel Bacterial Phylum Calditrichaeota.

The genome of Caldithrix abyssi, the first cultivated representative of a phylum-level bacterial lineage, was sequenced within the framework of Genomic Encyclopedia of Bacteria and Archaea (GEBA) project. The genomic analysis revealed mechanisms allowing this anaerobic bacterium to ferment peptides or to implement nitrate reduction with acetate or molecular hydrogen as electron donors. The genome encoded five different [NiFe]- and [FeFe]-hydrogenases, one of which, group 1 [NiFe]-hydrogenase, is presumably involved in lithoheterotrophic growth, three other produce H2 during fermentation, and one is apparently bidirectional. The ability to reduce nitrate is determined by a nitrate reductase of the Nap family, while nitrite reduction to ammonia is presumably catalyzed by an octaheme cytochrome c nitrite reductase εHao. The genome contained genes of respiratory polysulfide/thiosulfate reductase, however, elemental sulfur and thiosulfate were not used as the electron acceptors for anaerobic respiration with acetate or H2, probably due to the lack of the gene of the maturation protein. Nevertheless, elemental sulfur and thiosulfate stimulated growth on fermentable substrates (peptides), being reduced to sulfide, most probably through the action of the cytoplasmic sulfide dehydrogenase and/or NAD(P)-dependent [NiFe]-hydrogenase (sulfhydrogenase) encoded by the genome. Surprisingly, the genome of this anaerobic microorganism encoded all genes for cytochrome c oxidase, however, its maturation machinery seems to be non-operational due to genomic rearrangements of supplementary genes. Despite the fact that sugars were not among the substrates reported when C. abyssi was first described, our genomic analysis revealed multiple genes of glycoside hydrolases, and some of them were predicted to be secreted. This finding aided in bringing out four carbohydrates that supported the growth of C. abyssi: starch, cellobiose, glucomannan and xyloglucan. The genomic analysis demonstrated the ability of C. abyssi to synthesize nucleotides and most amino acids and vitamins. Finally, the genomic sequence allowed us to perform a phylogenomic analysis, based on 38 protein sequences, which confirmed the deep branching of this lineage and justified the proposal of a novel phylum Calditrichaeota