Slow-light enhanced light-matter interactions with applications to gas sensing

Optical gas detection in microsystems is limited by the short micron scale optical path length available. Recently, the concept of slow-light enhanced absorption has been proposed as a route to compensate for the short path length in miniaturized absorption cells. We extend the previous perturbation theory to the case of a Bragg stack infiltrated by a spectrally strongly dispersive gas with a narrow and distinct absorption peak. We show that considerable signal enhancement is possible. As an example, we consider a Bragg stack consisting of PMMA infiltrated by O2. Here, the required optical path length for visible to near-infrared detection (~760 nm) can be reduced by at least a factor of 10^2, making a path length of 1 mm feasible. By using this technique, optical gas detection can potentially be made possible in microsystems

Field-Aligned and Ionospheric Currents by AMPERE and SuperMAG During HSS/SIR-Driven Storms

This study considers 28 geomagnetic storms with Dst $\leq-50$ nT driven by high-speed streams (HSSs) and associated stream interaction regions (SIRs) during 2010-2017. Their impact on ionospheric horizontal and field-aligned currents (FACs) have been investigated using superposed epoch analysis of SuperMAG and AMPERE data, respectively. The zero epoch ($t_0$) was set to the onset of the storm main phase. Storms begin in the SIR with enhanced solar wind density and compressed southward oriented magnetic field. The integrated FAC and equivalent currents maximise 40 and 58 min after $t_0$, respectively, followed by a small peak in the middle of the main phase ($t_0$+4h), and a slightly larger peak just before the Dst minimum ($t_0$+5.3h). The currents are strongly driven by the solar wind, and the correlation between the Akasofu $\varepsilon$ and integrated FAC is $0.90$. The number of substorm onsets maximises near $t_0$. The storms were also separated into two groups based on the solar wind dynamic pressure p_dyn in the vicinity of the SIR. High p_dyn storms reach solar wind velocity maxima earlier and have shorter lead times from the HSS arrival to storm onset compared with low p_dyn events. The high p_dyn events also have sudden storm commencements, stronger solar wind driving and ionospheric response at $t_0$, and are primarily responsible for the first peak in the currents after $t_0$. After $t_0+2$ days, the currents and number of substorm onsets become higher for low compared with high p_dyn events, which may be related to higher solar wind speed.publishedVersio

Effect of ICME-Driven Storms on Field-Aligned and Ionospheric Currents From AMPERE and SuperMAG

Funding Information: This work was supported by the Academy of Finland project 314664 and 314670. We thank the AMPERE team and the AMPERE Science Center for providing the Iridium derived data products ( https://ampere.jhuapl.edu/ ). For the ground magnetometer data and substorm onset list, we gratefully thank the SuperMAG collaboration and all organizations involved ( https://supermag.jhuapl.edu/info/ ). For the geomagnetic indices, solar wind and interplanetary magnetic field data, we gratefully thank NASA/GSFC's Space Physics Data Facility's OMNIWeb ( https://omniweb.gsfc.nasa.gov/ ). Funding Information: This work was supported by the Academy of Finland project 314664 and 314670. We thank the AMPERE team and the AMPERE Science Center for providing the Iridium derived data products (https://ampere.jhuapl.edu/). For the ground magnetometer data and substorm onset list, we gratefully thank the SuperMAG collaboration and all organizations involved (https://supermag.jhuapl.edu/info/). For the geomagnetic indices, solar wind and interplanetary magnetic field data, we gratefully thank NASA/GSFC's Space Physics Data Facility's OMNIWeb (https://omniweb.gsfc.nasa.gov/). Publisher Copyright: © 2022. The Authors.Peer reviewe

Tracking Ca2+ ATPase intermediates in real time by x-ray solution scattering

Sarco/endoplasmic reticulum Ca2+ ATPase (SERCA) transporters regulate calcium signaling by active calcium ion reuptake to internal stores. Structural transitions associated with transport have been characterized by x-ray crystallography, but critical intermediates involved in the accessibility switch across the membrane are missing. We combined time-resolved x-ray solution scattering (TR-XSS) experiments and molecular dynamics (MD) simulations for real-time tracking of concerted SERCA reaction cycle dynamics in the native membrane. The equilibrium [Ca2] E1 state before laser activation differed in the domain arrangement compared with crystal structures, and following laser-induced release of caged ATP, a 1.5-ms intermediate was formed that showed closure of the cytoplasmic domains typical of E1 states with bound Ca2+ and ATP. A subsequent 13-ms transient state showed a previously unresolved actuator (A) domain arrangement that exposed the ADP-binding site after phosphorylation. Hence, the obtained TR-XSS models determine the relative timing of so-far elusive domain rearrangements in a native environment

How unstable? Volatility and the genuinely new parties in Eastern Europe

Measuring of party system stability in Eastern Europe during the first decade of democratic elections presents problems. The traditional quantitative measure - volatility - does not distinguish between the dynamics among incumbent parties and the rise of genuinely new ones. I propose a new additional measure - success of genuinely new parties - and compare it to volatility. The subsequent performance of initially successful genuinely new parties is analysed. While volatility has been remarkably high in East European countries, the genuinely new parties have, in general, not been very successful. Instability of party systems in the region stems rather from the inner dynamics of incumbent actors than from the rise of new contenders

TFAP2B influences the effect of dietary fat on weight loss under energy restriction

BACKGROUND: Numerous gene loci are related to single measures of body weight and shape. We investigated if 55 SNPs previously associated with BMI or waist measures, modify the effects of fat intake on weight loss and waist reduction under energy restriction. METHODS AND FINDINGS: Randomized controlled trial of 771 obese adults. (Registration: ISRCTN25867281.) One SNP was selected for replication in another weight loss intervention study of 934 obese adults. The original trial was a 10-week 600 kcal/d energy-deficient diet with energy percentage from fat (fat%) in range of 20-25 or 40-45. The replication study used an 8-weeks diet of 880 kcal/d and 20 fat%; change in fat% intake was used for estimation of interaction effects. The main outcomes were intervention weight loss and waist reduction. In the trial, mean change in fat% intake was -12/+4 in the low/high-fat groups. In the replication study, it was -23/-12 among those reducing fat% more/less than the median. TFAP2B-rs987237 genotype AA was associated with 1.0 kg (95% CI, 0.4; 1.6) greater weight loss on the low-fat, and GG genotype with 2.6 kg (1.1; 4.1) greater weight loss on the high-fat (interaction p-value; p = 0.00007). The replication study showed a similar (non-significant) interaction pattern. Waist reduction results generally were similar. Study-strengths include (i) the discovery study randomised trial design combined with the replication opportunity (ii) the strict dietary intake control in both studies (iii) the large sample sizes of both studies. Limitations are (i) the low minor allele frequency of the TFAP2B polymorphism, making it hard to investigate non-additive genetic effects (ii) the different interventions preventing identical replication-discovery study designs (iii) some missing data for non-completers and dietary intake. No adverse effects/outcomes or side-effects were observed. CONCLUSIONS: Under energy restriction, TFAP2B may modify the effect of dietary fat intake on weight loss and waist reduction

Parental origin of sequence variants associated with complex diseases

To access publisher full text version of this article. Please click on the hyperlink in Additional Links fieldEffects of susceptibility variants may depend on from which parent they are inherited. Although many associations between sequence variants and human traits have been discovered through genome-wide associations, the impact of parental origin has largely been ignored. Here we show that for 38,167 Icelanders genotyped using single nucleotide polymorphism (SNP) chips, the parental origin of most alleles can be determined. For this we used a combination of genealogy and long-range phasing. We then focused on SNPs that associate with diseases and are within 500 kilobases of known imprinted genes. Seven independent SNP associations were examined. Five-one with breast cancer, one with basal-cell carcinoma and three with type 2 diabetes-have parental-origin-specific associations. These variants are located in two genomic regions, 11p15 and 7q32, each harbouring a cluster of imprinted genes. Furthermore, we observed a novel association between the SNP rs2334499 at 11p15 and type 2 diabetes. Here the allele that confers risk when paternally inherited is protective when maternally transmitted. We identified a differentially methylated CTCF-binding site at 11p15 and demonstrated correlation of rs2334499 with decreased methylation of that site.info:eu-repo/grantAgreement/EC/FP7/21807

Meta-analysis of type 2 Diabetes in African Americans Consortium

Type 2 diabetes (T2D) is more prevalent in African Americans than in Europeans. However, little is known about the genetic risk in African Americans despite the recent identification of more than 70 T2D loci primarily by genome-wide association studies (GWAS) in individuals of European ancestry. In order to investigate the genetic architecture of T2D in African Americans, the MEta-analysis of type 2 DIabetes in African Americans (MEDIA) Consortium examined 17 GWAS on T2D comprising 8,284 cases and 15,543 controls in African Americans in stage 1 analysis. Single nucleotide polymorphisms (SNPs) association analysis was conducted in each study under the additive model after adjustment for age, sex, study site, and principal components. Meta-analysis of approximately 2.6 million genotyped and imputed SNPs in all studies was conducted using an inverse variance-weighted fixed effect model. Replications were performed to follow up 21 loci in up to 6,061 cases and 5,483 controls in African Americans, and 8,130 cases and 38,987 controls of European ancestry. We identified three known loci (TCF7L2, HMGA2 and KCNQ1) and two novel loci (HLA-B and INS-IGF2) at genome-wide significance (4.15 × 10(-94)<P<5 × 10(-8), odds ratio (OR)  = 1.09 to 1.36). Fine-mapping revealed that 88 of 158 previously identified T2D or glucose homeostasis loci demonstrated nominal to highly significant association (2.2 × 10(-23) < locus-wide P<0.05). These novel and previously identified loci yielded a sibling relative risk of 1.19, explaining 17.5% of the phenotypic variance of T2D on the liability scale in African Americans. Overall, this study identified two novel susceptibility loci for T2D in African Americans. A substantial number of previously reported loci are transferable to African Americans after accounting for linkage disequilibrium, enabling fine mapping of causal variants in trans-ethnic meta-analysis studies.Peer reviewe