The detection of aquatic animal species using environmental DNA – a review of eDNA as a survey tool in ecology

1. Knowledge of species distribution is critical to ecological management and conservation biology. Effective management requires the detection of populations, which can sometimes be at low densities and is usually based on visual detection and counting. 2. Recently, there has been considerable interest in the detection of short species-specific environmental DNA (eDNA) fragments to allow aquatic species monitoring within different environments due to the potential of greater sensitivity over traditional survey methods which can be time-consuming and costly. 3. Environmental DNA analysis is increasingly being used in the detection of rare or invasive species and has also been applied to eDNA persistence studies and estimations of species biomass and distribution. When combined with next-generation sequencing methods, it has been demonstrated that entire faunas can be identified. 4. Different environments require different sampling methodologies, but there remain areas where laboratory methodologies could be standardized to allow results to be compared across studies. 5. Synthesis and applications. We review recently published studies that use eDNA to moni- tor aquatic populations, discuss the methodologies used and the application of eDNA analysis as a survey tool in ecology. We include innovative ideas for how eDNA can be used for conservation and management citing test cases, for instance, the potential for on-site analyses, including the application of eDNA analysis to carbon nanotube platforms or laser transmission spectroscopy to facilitate rapid on-site detections. The use of eDNA monitoring is already being adopted in the UK for ecological surveys

An iron-catalysed C–C bond-forming spirocyclization cascade providing sustainable access to new 3D heterocyclic frameworks

Heterocyclic architectures offer powerful creative possibilities to a range of chemistry end-users. This is particularly true of heterocycles containing a high proportion of sp3-carbon atoms, which confer precise spatial definition upon chemical probes, drug substances, chiral monomers and the like. Nonetheless, simple catalytic routes to new heterocyclic cores are infrequently reported, and methods making use of biomass-accessible starting materials are also rare. Here, we demonstrate a new method allowing rapid entry to spirocyclic bis-heterocycles, in which inexpensive iron(III) catalysts mediate a highly stereoselective C–C bond-forming cyclization cascade reaction using (2-halo)aryl ethers and amines constructed using feedstock chemicals readily available from plant sources. Fe(acac)3 mediates the deiodinative cyclization of (2-halo)aryloxy furfuranyl ethers, followed by capture of the intermediate metal species by Grignard reagents, to deliver spirocycles containing two asymmetric centres. The reactions offer potential entry to key structural motifs present in bioactive natural products

Insertional Mutagenesis Identifies a STAT3/Arid1b/β-catenin Pathway Driving Neurofibroma Initiation

To identify genes and signaling pathways that initiate Neurofibromatosis type 1 (NF1) neurofibromas, we used unbiased insertional mutagenesis screening, mouse models, and molecular analyses. We mapped an Nf1-Stat3-Arid1b/β-catenin pathway that becomes active in the context of Nf1 loss. Genetic deletion of Stat3 in Schwann cell progenitors (SCPs) and Schwann cells (SCs) prevents neurofibroma formation, decreasing SCP self-renewal and β-catenin activity. β-catenin expression rescues effects of Stat3 loss in SCPs. Importantly, P-STAT3 and β-catenin expression correlate in human neurofibromas. Mechanistically, P-Stat3 represses Gsk3β and the SWI/SNF gene Arid1b to increase β-catenin. Knockdown of Arid1b or Gsk3β in Stat3fl/fl;Nf1fl/fl;DhhCre SCPs rescues neurofibroma formation after in vivo transplantation. Stat3 represses Arid1b through histone modification in a Brg1-dependent manner, indicating that epigenetic modification plays a role in early tumorigenesis. Our data map a neural tumorigenesis pathway and support testing JAK/STAT and Wnt/β-catenin pathway inhibitors in neurofibroma therapeutic trials

Identifying the Science and Technology Dimensions of Emerging Public Policy Issues through Horizon Scanning

Public policy requires public support, which in turn implies a need to enable the public not just to understand policy but also to be engaged in its development. Where complex science and technology issues are involved in policy making, this takes time, so it is important to identify emerging issues of this type and prepare engagement plans. In our horizon scanning exercise, we used a modified Delphi technique [1]. A wide group of people with interests in the science and policy interface (drawn from policy makers, policy adviser, practitioners, the private sector and academics) elicited a long list of emergent policy issues in which science and technology would feature strongly and which would also necessitate public engagement as policies are developed. This was then refined to a short list of top priorities for policy makers. Thirty issues were identified within broad areas of business and technology; energy and environment; government, politics and education; health, healthcare, population and aging; information, communication, infrastructure and transport; and public safety and national security

Ecological sensitivity of marl lakes to nutrient enrichment: evidence from Hawes Water, UK

Highly calcareous (marl) lakes are infrequent but important freshwater ecosystems, protected under the EU Habitats and Species Directive. Chara lakes have been considered resistant to eutrophication owing to the self-stabilising properties of charophyte meadows. However, the opposite is suggested by the large-scale biodiversity declines in marl lake taxa in Europe, and evidence of charophyte sensitivity to eutrophication. We combined contemporary, palaeolimnological and archival methods to investigate the eutrophication of Hawes Water, a shallow marl lake in north-west England (U.K.). Changes in aquatic macrophyte and invertebrate communities were reconstructed through the analysis of historical macrophyte surveys and sedimentary plant and animal macrofossils in two dated sediment cores from the littoral and deep zones of the lake. In addition, chlorophyll and carotenoid pigments were analysed to track changes in primary production from benthic and pelagic areas. Substantial changes in macrophyte communities were detected over centennial timescales, suggesting high ecosystem sensitivity considering the presently moderate phosphorus concentrations in Hawes Water (mean annual total phosphorus 20 μg L-1). Two apparent periods of threshold-like change were identified from the sediment record: (i) changes in cyanobacteria (aphanizophyll + myxoxanthophyll to canthaxanthin + zeaxanthin) and potentially in nutrient stoichiometry, reductions in the maximum macrophyte colonisation depth and water clarity, reduced charophyte and Potamogeton diversity, and increases in Nymphaeaceae; and (ii) severe reductions in light availability inferred from subdecadal doubling in phytoplankton abundance, substantial increases in Daphnia abundance and the extinction of charophytes from higher water depths. Further, change in both the littoral and deeper water has confined key marl lake taxa to smaller niches. In the littoral, increasing siltation and reed and Nymphaeaceae densities caused extinction of Littorella uniflora in the early 1900s and have reduced the evenness of Characeae with suspected imminent extinction of two highly localised Chara spp. In the deeper water, upslope creep of maximum colonisation depth has reduced habitat for intermediate-depth marl lake taxa leading to the loss of four Potamogeton and one Chara species, and replacement of these taxa by Nuphar lutea. The large changes in macrophyte community composition and increased incidences of turbid water have reduced the distinctive and valued marl lake features of Hawes Water, indicating that marl lakes can, as a habitat type, be highly sensitive to eutrophication. The persistence of abundant generalist macrophyte species at considerable water depth may be a feature of high-alkalinity lakes in clearwater, macrophyte-dominated states, but is a distinct eutrophication response in marl lakes rather than an indication of resistance to eutrophication