Most Northerly Observation of a Grizzly Bear (Ursus arctos) in Canada: Photographic and DNA Evidence from Melville Island, Northwest Territories

During geological studies in 2003 and 2004 on Melville Island, Northwest Territories, Canada, field parties photographed and gathered genetic information on one or more grizzly bears (Ursus arctos). To our knowledge, these data constitute the most northerly observations made of this species in North America. The DNA of a hair sample collected on Melville Island in 2004 is genetically indistinguishable from DNA collected from a population of grizzly bears around Paulatuk, Northwest Territories, along the northern mainland coast. It is also distinct from the DNA of the Viscount Melville polar bear (Ursus maritimus) population. Our evidence and review suggest that, at a minimum, transient grizzly bears are now regular visitors to the Canadian Arctic Archipelago. More research will be required to understand the significance of these observations, but a small viable population of grizzly bears may now be using areas in or around Melville Island.Dans le cadre d’études géologiques réalisées en 2003 et en 2004 sur l’île Melville, dans les Territoires du Nord-Ouest, au Canada, des chercheurs sur le terrain ont photographié et recueilli de l’information génétique sur un ou plusieurs grizzlys (Ursus arctos). À notre connaissance, il s’agit des données représentant les observations sur cette espèce qui ont été recueillies les plus au nord de l’Amérique du Nord. L’ADN d’un échantillon de poil prélevé sur l’île Melville en 2004 est indifférenciable, du point de vue génétique, de l’ADN prélevé au sein d’une population de grizzlys de la région de Paulatuk, Territoires du Nord-Ouest, le long de la côte nord. Par ailleurs, il est distinct de l’ADN de la population d’ours polaires du Vicomte de Melville (Ursus maritimus). D’après les preuves que nous avons recueillies et notre analyse, à tout le moins, les grizzlys de passage sont maintenant des visiteurs habituels dans l’archipel Arctique canadien. D’autres recherches devront être effectuées afin de comprendre l’importance de ces observations, mais une population petite, bien que viable, de grizzlys pourrait maintenant utiliser les régions de l’île Melville ou situées tout près

Recent Hybridization between a Polar Bear and Grizzly Bears in the Canadian Arctic

Grizzly bears have recently become more common on the Arctic Islands in the Inuvialuit Settlement Region, concurrently with a period of environmental change. Over the last decade, grizzly bear – polar bear hybrids have been confirmed within this region, triggering extensive discussion and speculation regarding the impact of hybridization on the parent species. Through harvests, sightings, and captures, we document an increase in the presence of grizzly bears and combine field observations of hybrids with genetic analysis and parentage analysis to identify four first-generation (F1) hybrids and four offspring of F1 hybrids and grizzly bears (backcross-to-grizzly-bear individuals). We trace these eight hybrid individuals to a single female polar bear who mated with two grizzly bears. We sampled one of her mates on the sea ice in the High Arctic and deduced the genotype of the other from his five offspring. The two male grizzly bears are sires of both the F1 generation and the backcross-to-grizzly-bear generation. So what initially appeared to be a sudden spate of hybridization in the western Canadian Arctic originated with the unusual mating between three non-hybrid parents. The breakdown of species barriers may start with atypical mating preferences of select individuals; however, the story we present can be traced to a single female polar bear who, along with three of her known F1 offspring, has been killed.La présence du grizzli se fait plus courante dans l’archipel Arctique de la région désignée des Inuvialuit depuis un certain temps, ce qui coïncide avec une période de changement environnemental. Ces dix dernières années, la présence d’ours polaires-grizzlis hybrides a été confirmée dans cette région, ce qui a déclenché d’importantes discussions et hypothèses relativement aux incidences de l’hybridation sur les espèces apparentées. Au moyen de récoltes, d’observations et de captures, nous avons documenté l’augmentation de la présence de grizzlis, alliées à des observations d’hybrides sur le terrain avec analyse génétique et analyse de parenté afin d’identifier quatre hybrides de première génération (F1) et quatre descendants d’hybrides F1 et de grizzlis (individus issus de rétrocroisements avec un grizzli). Nous faisons remonter ces huit hybrides à une seule ourse polaire qui s’est accouplée avec deux grizzlis. Nous avons prélevé un échantillon d’un de ses compagnons sur la glace de mer de l’Extrême-Arctique et avons déduit le génotype de l’autre à partir de ses cinq descendants. Les deux grizzlis mâles sont des géniteurs de la génération F1 et de la génération du rétrocroisement avec un grizzli. Donc, ce qui semblait être, au début, une montée soudaine d’hybridation dans l’ouest de l’Arctique canadien est attribuable à l’accouplement inhabituel de trois parents non hybrides. La rupture des obstacles auxquels les espèces font face pourrait commencer par les préférences d’accouplement atypiques de certains individus. Toutefois, la situation dont il est ici question remonte à une seule ourse polaire qui a été tuée, avec trois de ses descendants connus de la génération F1

American Black Bear Population Fragmentation Determined Through Pedigrees in the Trans-Border Canada-United States Region

Fragmentation of species with large numbers of individuals in adjacent areas can be challenging to detect using genetic tools as there often is no differentiation because genetic drift occurs very slowly. We used a genetic-based pedigree analysis to detect fragmentation in the American black bear (Ursus americanus) across 2 highways with large adjacent populations. We used 20 locus microsatellite genotypes to detect parent-offspring and full sibling pairs within a sample of 388 black bears. We used the spatial patterns of capture locations of these first order relatives relative to US Highway 2 in northwest Montana and Highway 3 in southeast British Columbia to estimate the number of close relatives sampled across the highways (migrants/km of highway length) as an index of fragmentation. We compared these values to an expected migrant/km rate derived from the mean values of simulated fractures in the Highway 2 and Highway 3 region. We found evidence that these highway corridors were fragmenting black bear populations, but not completely. The observed migrant/km rate for Highway 2 was 0.05, while the expected rate was 0.21 migrants/km. Highway 3 had an observed migrant/km rate of 0.09 compared to the expected rate of 0.26. None of the 16 bears carrying GPS radio collars for 1 year crossed Highway 2, yet 6 of 18 crossed Highway 3. Pedigree and telemetry results were more closely aligned in the Highway 2 system evidencing more intense fragmentation than we found along Highway 3. Our results demonstrate that pedigree analysis may be a useful tool for investigating population fragmentation in situations where genetic signals of differentiation are too weak to determine migration rates using individual-based methods, such as population assignment

Mitigating Scoring Errors in Microsatellite Data from Wild Populations

Microsatellite data are widely used to test ecological and evolutionary hypotheses in wild populations. In this paper, we consider three typical sources of scoring errors capable of biasing biological conclusions: stuttering, large-allele dropout and null alleles. We describe methods to detect errors and propose conventions to mitigate scoring errors and report error rates in studies of wild populations. Finally, we discuss potential bias in ecological or evolutionary conclusions based on data sets containing these scoring errors

Potential Impact of Mediterranean Aquaculture on the Wild Predatory Bluefish

Aquaculture impacts on wild populations of fish have been considered principally due to farm escapes. The Bluefish Pomatomus saltatrix, which exhibits two distinct genetic units in the Mediterranean Sea, is a voracious predator and is attracted to aquaculture cages to prey on farmed fish, particularly Gilthead Seabream Sparus aurata and European Sea Bass Dicentrarchus labrax. We compared the genetic diversity of adult Bluefish caught inside one aquaculture farm located in Spanish waters of the western Mediterranean Sea with reference individuals of East and West Mediterranean stocks from the open sea. Bluefish were genetically assigned to their putative origin using seven microsatellite loci and mitochondrial cytochrome oxidase subunit I as molecular markers. As expected, most of the individuals caught from inside the fish farm cages were assigned to the local genetic population. However, between 7.14% and 11.9% of individuals were assigned to the distant and different genetic unit inhabiting Turkish waters, the East Mediterranean stock. The genetic membership of those individuals revealed some degree of interbreeding between the East and West Mediterranean Bluefish stocks. All results suggest that aquaculture acts as an attractor for Bluefish and could affect genetic diversity as well as phylogeography of this fish and maybe other similar species that aggregate around marine fish farms.We are very grateful to T. Ceyhan for providing the Bluefish samples from Turkey. The study was supported by the MICINN CGL-2009-08279 Grant (Spain) and the Asturian Grant GRUPIN2014-093. Laura Miralles held a PCTI Grant from the Asturias Regional Government, referenced BP 10-004. This is a contribution from the Marine Observatory of Asturias

Identification of the barrier to gene flow between phylogeographic lineages of the common hamster Cricetus cricetus

In anthropogenically disturbed habitats, natural barriers still exist and have to be recognized, as they are important for conservation measures. Areas of phylogeographic breaks within a species are often stabilized in inhospitable regions which act as natural barriers. An area of contact between phylogeographic lineages of the common hamster (Cricetus cricetus) was found in the Małopolska Upland in Poland. A total of 142 common hamsters were captured between 2005 and 2009. All hamsters were genotyped at 17 microsatellite loci and partial sequences of the mitochondrial (mtDNA) control region were obtained. No mixed populations with mtDNA haplotypes of both lineages were found. The distance between marginal populations was about 20 km; no hamsters were found in the area between. A principal components analysis (PCA) was performed on microsatellite data and the greatest change in PC1 scores was found between marginal samples. To define the habitat components responsible for the phylogeographic break, we compared the habitat composition of sites occupied by hamsters with those from which hamsters were absent. We found that hamsters avoided forested areas and sandy soils. The area of the potential barrier was characterized by a high proportion of woodland and unfavorable soils in comparison with neighboring areas inhabited by hamsters. They cannot settle in this area due to their high winter mortality in shallow burrows and high predation in the fields adjacent to forests

Massive Nest-Box Supplementation Boosts Fecundity, Survival and Even Immigration without Altering Mating and Reproductive Behaviour in a Rapidly Recovered Bird Population

Habitat restoration measures may result in artificially high breeding density, for instance when nest-boxes saturate the environment, which can negatively impact species' demography. Potential risks include changes in mating and reproductive behaviour such as increased extra-pair paternity, conspecific brood parasitism, and polygyny. Under particular cicumstances, these mechanisms may disrupt reproduction, with populations dragged into an extinction vortex. With the use of nuclear microsatellite markers, we investigated the occurrence of these potentially negative effects in a recovered population of a rare secondary cavity-nesting farmland bird of Central Europe, the hoopoe (Upupa epops). High intensity farming in the study area has resulted in a total eradication of cavity trees, depriving hoopoes from breeding sites. An intensive nest-box campaign rectified this problem, resulting in a spectacular population recovery within a few years only. There was some concern, however, that the new, high artificially-induced breeding density might alter hoopoe mating and reproductive behaviour. As the species underwent a serious demographic bottleneck in the 1970–1990s, we also used the microsatellite markers to reconstitute the demo-genetic history of the population, looking in particular for signs of genetic erosion. We found i) a low occurrence of extra-pair paternity, polygyny and conspecific brood parasitism, ii) a high level of neutral genetic diversity (mean number of alleles and expected heterozygosity per locus: 13.8 and 83%, respectively) and, iii) evidence for genetic connectivity through recent immigration of individuals from well differentiated populations. The recent increase in breeding density did thus not induce so far any noticeable detrimental changes in mating and reproductive behaviour. The demographic bottleneck undergone by the population in the 1970s-1990s was furthermore not accompanied by any significant drop in neutral genetic diversity. Finally, genetic data converged with a concomitant demographic study to evidence that immigration strongly contributed to local population recovery