Genomic selection in rubber tree breeding: A comparison of models and methods for managing G×E interactions

Several genomic prediction models combining genotype × environment (G×E) interactions have recently been developed and used for genomic selection (GS) in plant breeding programs. G×E interactions reduce selection accuracy and limit genetic gains in plant breeding. Two data sets were used to compare the prediction abilities of multienvironment G×E genomic models and two kernel methods. Specifically, a linear kernel, or GB (genomic best linear unbiased predictor [GBLUP]), and a nonlinear kernel, or Gaussian kernel (GK), were used to compare the prediction accuracies (PAs) of four genomic prediction models: 1) a single-environment, main genotypic effect model (SM); 2) a multienvironment, main genotypic effect model (MM); 3) a multienvironment, single-variance G×E deviation model (MDs); and 4) a multienvironment, environment-specific variance G×E deviation model (MDe). We evaluated the utility of genomic selection (GS) for 435 individual rubber trees at two sites and genotyped the individuals via genotyping-by-sequencing (GBS) of single-nucleotide polymorphisms (SNPs). Prediction models were used to estimate stem circumference (SC) during the first 4 years of tree development in conjunction with a broad-sense heritability (H2) of 0.60. Applying the model (SM, MM, MDs, and MDe) and kernel method (GB and GK) combinations to the rubber tree data revealed that the multienvironment models were superior to the single-environment genomic models, regardless of the kernel (GB or GK) used, suggesting that introducing interactions between markers and environmental conditions increases the proportion of variance explained by the model and, more importantly, the PA. Compared with the classic breeding method (CBM), methods in which GS is incorporated resulted in a 5-fold increase in response to selection for SC with multienvironment GS (MM, MDe, or MDs). Furthermore, GS resulted in a more balanced selection response for SC and contributed to a reduction in selection time when used in conjunction with traditional genetic breeding programs. Given the rapid advances in genotyping methods and their declining costs and given the overall costs of large-scale progeny testing and shortened breeding cycles, we expect GS to be implemented in rubber tree breeding programs

Applications of videolaparoscopic surgery in children

OBJECTIVES: to present the videolaparoscopies performed by the Children's Surgery Service, and study the main indications for pediatric laparoscopic surgeries, considering advantages and disadvantages over conventional open procedures. METHODS: retrospective analysis of 612 videolaparoscopies in children aged between 8 days and 17 years treated from November/95 to 2000. Basic principles of videolaparoscopy and the postoperative management of several pediatric diseases are described. The results, advantages, and complications were analyzed after a 5-year follow-up period. RESULTS:laparoscopic surgery allowed for a wide series of abdominal procedures conventionally carried out through open surgery, mainly for the treatment of gastroesophageal reflux disease, inflammatory acute abdomen, adhesive intestinal obstruction, biliary lithiasis, tumors, cryptorchidism, ovarian diseases, splenectomies, aganglionosis, trauma and others. Morbidity was low (1%), and mortality due to laparoscopy was nonexistent. Conversion to laparotomy occurred in only 14 cases (2.3%), mainly because of trauma. The principal advantages included minimal surgical trauma, pain and reflex ileum, short hospital stay, almost no incisional hernias and better cosmetic scars. CONCLUSIONS: videolaparoscopy seems to be a great advance in modern pediatric surgery, allowing safer and less invasive treatment of a wide series of abdominal diseases at all pediatric ages.OBJETIVO: apresentar a casuística de videolaparoscopias do serviço, analisando as principais indicações para operações videolaparoscópicas em pediatria e considerando as vantagens e desvantagens em relação aos procedimentos convencionais por laparotomia. MÉTODOS: análise retrospectiva de 612 videolaparoscopias em crianças com idades de 8 dias a 17 anos, operadas de novembro/1995 a 2000. São descritos os princípios básicos da videolaparoscopia e o manejo pós-operatório nas inúmeras indicações pediátricas. Os resultados, vantagens e complicações foram analisados após um período de seguimento de até 5 anos. RESULTADOS: a cirurgia laparoscópica permitiu realizar vários procedimentos abdominais convencionalmente efetuados por via aberta, sobretudo no tratamento do refluxo gastroesofágico, abdome agudo inflamatório, criptorquidia, obstrução por bridas, litíase biliar, tumores, afecções de ovário, esplenectomia, aganglionose, trauma e outros. A morbidade foi baixa (1%) e a mortalidade devido à laparoscopia foi nula. Houve conversão para laparotomia em somente 14 casos (2,3%), sobretudo em trauma. As principais vantagens incluíram mínimos trauma cirúrgico, dor e íleo paralítico, pouco tempo de internação, quase ausência de hérnia incisional e melhor estética. CONCLUSÕES: a videolaparoscopia parece ser um grande avanço da cirurgia pediátrica moderna, permitindo tratar de modo menos invasivo e com segurança grande parte das afecções abdominais em crianças de todas as idades.Universidade Federal de São Paulo (UNIFESP)UFGInstituto Ortopédico de Goiânia e no Hospital AmparoUNIFESPSciEL

Density functional investigations of defect induced mid-gap states in graphane

We have carried out ab initio electronic structure calculations on graphane (hydrogenated graphene) with single and double vacancy defects. Our analysis of the density of states reveal that such vacancies induce the mid gap states and modify the band gap. The induced states are due to the unpaired electrons on carbon atoms. Interestingly the placement and the number of such states is found to be sensitive to the distance between the vacancies. Furthermore we also found that in most of the cases the vacancies induce a local magnetic moment.Comment: 15 page

Valor genético de genitores de batata para capacidade de hibridação.

bitstream/item/30275/1/BOLETIM-31.pd

Regularized expression for the gravitational energy-momentum in teleparallel gravity and the principle of equivalence

The expression of the gravitational energy-momentum defined in the context of the teleparallel equivalent of general relativity is extended to an arbitrary set of real-valued tetrad fields, by adding a suitable reference space subtraction term. The characterization of tetrad fields as reference frames is addressed in the context of the Kerr space-time. It is also pointed out that Einstein's version of the principle of equivalence does not preclude the existence of a definition for the gravitational energy-momentum density.Comment: 17 pages, Latex file, no figure; minor correction in eq. (14), three references added, to appear in the GRG Journa

Tamanho do genoma em coqueiro (Cocos nucifera L.) via citometria de Fluxo.

O objetivo do presente trabalho foi determinar o tamanho do genoma do coqueiro (Cocos nucífera L.) via determinação do conteúdo de DNA estimado via citometria de fluxo. Quatorze genótipos de coco, seis do tipo anão e oito do tipo gigante, foram utilizados nesse estudo. Para tal, amostras de folíolos medindo aproximadamente 0,5 cm2, por genótipo foram maceradas em solução tampão e filtradas para obtenção de uma suspensão dos núcleos. Posteriormente, os núcleos foram coloridos com iodeto de propídeo e em seguida foi adicionado RNase em cada amostra. Como padrão interno foi utilizado a cultivar CE-777 de milho (Zea mays L.). Após 30 minutos, as amostras foram analisadas em citômetro de fluxo (Partec PA II); para cada genótipo foi feito a leitura de cinco amostras. O conteúdo 2C de DNA de cada genótipo foi determinado, com médias variando de 2,74 pg a 2,86 pg, sendo a média geral 2,80 pg o que corresponde a 2.744 Mpb. O conteúdo de DNA do grupo Gigante foi o mais varável sendo o maior conteúdo estimado para o Gigante de Rennel, e o menor conteúdo para Gigante do Oeste Africano; o grupo Anão teve uma menor variação. A média do conteúdo 2C de DNA do grupo gigante foi de 2,80 pg e a do grupo Anão foi de 2,78pg. Os coeficientes de variação variaram de 2,5% a 3,1%, o que indica a precisão das medições. O teste Scott e Knott a 5% de probabilidade, agrupou os genótipos em 4 classes de acordo com as médias do conteúdo de DNA. Os resultados permitiram concluir que a espécie apresenta baixo conteúdo de DNA quando comparada com outros membros da família Arecaceae