Autumn microhabitat breadth differs between family groups of Atlantic salmon parr (Salmo salar) in a small chalk stream

The effect of family traits on the microhabitat use by six genetically distinct groups (three in each year of study) of juvenile Atlantic salmon tagged with passive integrated transponder (PIT) tags was studied via PIT-tag detectors installed on the river bed in a small chalk stream of southern England, during Autumn in 2006 and 2007. Canonical correspondence analysis of the molecular and microhabitat data revealed considerable overlap in the microhabitat use of the family groups and notable differences in microhabitat breadth, which was partly influenced by sample size. The data suggest that microhabitat breadth and preferences of wild salmon are influenced by family of origin

Characterization of an antioxidant and antimicrobial extract from cool climate, white grape marc

Valorization of agricultural waste has become increasingly important. Wastes generated by wineries are high in phenolic compounds with antioxidant and antibacterial properties, which contribute to phytotoxicity, making their immediate use for agricultural means limited. Utilizing a water-based extraction method, the phenolic compounds from winery waste were extracted and purified. The resulting extract was characterized for phenolic composition using high-pressure liquid chromatography-ultraviolet/visible and electrochemical detectors (HPLC-UV/Vis, ECD) for monomers, and spectral assessment of the tannins present using attenuated total reflectance-Fourier transform infrared (ATR-FTIR), FT-Raman, and solid-state nuclear magnetic resonance (SSNMR) spectroscopies. The extract\u2019s antioxidant activity was assessed by the scavenging of the 2,2-diphenyl-1\u2013picrylhydrazyl (DPPH) radical and Folin-Ciocalteu total phenolic assay, and was found to be as effective as a commercially obtained grape extract. The extract\u2019s antimicrobial efficacy was tested for minimum bactericidal concentration using Candida albicans, Escherichia coli 25922, and Staphylococcus aureus 6538, which resulted in greater efficacy against gram-positive bacteria as shown over gram-negative bacteria, which can be linked to both monomeric and tannin polyphenols, which have multiple modes of bactericidal action

Glass transition of an epoxy resin induced by temperature, pressure and chemical conversion: a configurational entropy rationale

A comparative study is reported on the dynamics of a glass-forming epoxy resin when the glass transition is approached through different paths: cooling, compression, and polymerization. In particular, the influence of temperature, pressure and chemical conversion on the dynamics has been investigated by dielectric spectroscopy. Deep similarities are found in dynamic properties. A unified reading of our experimental results for the structural relaxation time is given in the framework of the Adam-Gibbs theory. The quantitative agreement with the experimental data is remarkable, joined with physical values of the fitting parameters. In particular, the fitting function of the isothermal tau(P) data gives a well reasonable prediction for the molar thermal expansion of the neat system, and the fitting function of the isobaric-isothermal tau(C) data under step- polymerization conforms to the prediction of diverging tau at complete conversion of the system.Comment: 16 pages, 8 figures, from the talk given at the 4th International Discussion Meeting on Relaxations in Complex Systems (IDMRCS), Hersonissos, Helaklion, Crete (Greece), 17-23 June 200

A simple method for integrating a complex model into an ensemble data assimilation system using MPI

This paper details a strategy for modifying the source code of a complex model so that the model may be used in a data assimilation context, {and gives the standards for implementing a data assimilation code to use such a model}. The strategy relies on keeping the model separate from any data assimilation code, and coupling the two through the use of Message Passing Interface (MPI) {functionality}. This strategy limits the changes necessary to the model and as such is rapid to program, at the expense of ultimate performance. The implementation technique is applied in different models with state dimension up to $2.7 \times 10^8$. The overheads added by using this implementation strategy in a coupled ocean-atmosphere climate model are shown to be an order of magnitude smaller than the addition of correlated stochastic random errors necessary for some nonlinear data assimilation techniques

Earth-as-an-exoplanet: comparing earthshine observations to models of an exo-Earth

Traditional methods of exoplanet characterization that only make use of emitted or reflected flux lack the ability to fully distinguish between different physical features of the target, such as cloud layers, hazes, or surface features. Polarimetry, however, is a powerful, more sensitive technique that has this ability, as it measures light as a vector (by the orientation of the electric field) rather than a scalar intensity. It is therefore extremely sensitive to the composition and structure of the planetary atmosphere and surface, being affected by properties such as the mixing ratios of atmospheric absorbing gases, cloud optical thickness, cloud top pressure, cloud particle size, and surface albedo. Various groups have theoretically studied the optical linear polarimetric signals of Earth-like exoplanets as functions of both orbital phase and wavelength. With this project we assess the accuracy of these theoretical models against observations of the Earthshine, the only known observations of an Earth-like planet thus far. Using data of the atmosphere and surface taken by the MODIS instrument aboard the Terra and Aqua satellites, as well as surface reflectance spectra from the JPL EcoStress Spectral Library, we created a gridded model of the Earth. Then, using this model data as input for three separate radiative transfer algorithms, we generate the flux and linear polarization spectra for the model exoplanet-Earth across the optical to near-infrared wavelengths. We compare the results from all three codes to each other and to the observational linear spectropolarimetric data of the Earthshine obtained by a member of our group. We identify similarities and potential pitfalls between the codes, and make necessary adjustments to them, in an effort to improve our future characterizations of terrestrial exoplanets.Stars and planetary system

Quantized charge transport through a static quantum dot using a surface acoustic wave

We present a detailed study of the surface acoustic wave mediated quantized transport of electrons through a split gate device containing an impurity potential defined quantum dot within the split gate channel. A new regime of quantized transport is observed at low RF powers where the surface acoustic wave amplitude is comparable to the quantum dot charging energy. In this regime resonant transport through the single-electron dot state occurs which we interpret as turnstile-like operation in which the traveling wave amplitude modulates the entrance and exit barriers of the quantum dot in a cyclic fashion at GHz frequencies. For high RF powers, where the amplitude of the surface acoustic wave is much larger than the quantum dot energies, the quantized acoustoelectric current transport shows behavior consistent with previously reported results. However, in this regime, the number of quantized current plateaus observed and the plateau widths are determined by the properties of the quantum dot, demonstrating that the microscopic detail of the potential landscape in the split gate channel has a profound influence on the quantized acoustoelectric current transport.Comment: 9 page

Comparing models of an exoplanet-earth to earthshine observations

Polarimetry is widely becoming recognized as a powerful technique for enhancing the contrast between a star and an exoplanet, and thus improving upon the direct detection of exoplanets. The real power of polarimetry, however, is in its ability to characterize the physical properties of these worlds. This is because the state of the polarization of the light from the planet is very sensitive to the composition and structure of the planetary atmosphere and surface, being affected by properties such as the mixing ratios of atmospheric absorbing gases, cloud optical thickness, cloud top pressure, cloud particle size, and surface albedo. Various groups have theoretically studied the optical linear polarimetric signals of Earth-like exoplanets as functions of both orbital phase and wavelength. This project aims to validate the accuracy of these theoretical models against the only known observations of an Earth-like planet thus far: Earthshine. Using atmospheric and surface data taken by the MODIS instrument aboard the Terra and Aqua satellites, as well as surface albedo spectra from the EcoStress Spectral Library, we created a detailed model of the Earth. Then, using this model data as input for three separate radiative transfer algorithms, we generate the flux and linear polarization spectra for the model exoplanet-Earth from the optical to near-infrared wavelengths. We compare the results from all three codes to each other and to observational linear spectropolarimetric data of the Earthshine obtained by a member of our group. We identify similarities and potential pitfalls between these codes in an effort to improve our future characterizations of Earth-like exoplanets.Stars and planetary system

The embedding method beyond the single-channel case: Two-mode and Hubbard chains

We investigate the relationship between persistent currents in multi-channel rings containing an embedded scatterer and the conductance through the same scatterer attached to leads. The case of two uncoupled channels corresponds to a Hubbard chain, for which the one-dimensional embedding method is readily generalized. Various tests are carried out to validate this new procedure, and the conductance of short one-dimensional Hubbard chains attached to perfect leads is computed for different system sizes and interaction strengths. In the case of two coupled channels the conductance can be obtained from a statistical analysis of the persistent current or by reducing the multi-channel scattering problem to several single-channel setups.Comment: 14 pages, 13 figures, submitted for publicatio

Limited Lifespan of Fragile Regions in Mammalian Evolution

An important question in genome evolution is whether there exist fragile regions (rearrangement hotspots) where chromosomal rearrangements are happening over and over again. Although nearly all recent studies supported the existence of fragile regions in mammalian genomes, the most comprehensive phylogenomic study of mammals (Ma et al. (2006) Genome Research 16, 1557-1565) raised some doubts about their existence. We demonstrate that fragile regions are subject to a "birth and death" process, implying that fragility has limited evolutionary lifespan. This finding implies that fragile regions migrate to different locations in different mammals, explaining why there exist only a few chromosomal breakpoints shared between different lineages. The birth and death of fragile regions phenomenon reinforces the hypothesis that rearrangements are promoted by matching segmental duplications and suggests putative locations of the currently active fragile regions in the human genome

Aharonov-Bohm Interferometry with Interacting Quantum Dots: Spin Configurations, Asymmetric Interference Patterns, Bias-Voltage-Induced Aharonov-Bohm Oscillations, and Symmetries of Transport Coefficients

We study electron transport through multiply-connected mesoscopic geometries containing interacting quantum dots. Our formulation covers both equilibrium and non-equilibrium physics. We discuss the relation of coherent transport channels through the quantum dot to flux-sensitive Aharonov-Bohm oscillations in the total conductance of the device. Contributions to transport in first and second order in the intrinsic line width of the dot levels are addressed in detail. We predict an interaction-induced asymmetry in the amplitude of the interference signal around resonance peaks as a consequence of incoherence associated with spin-flip processes. This asymmetry can be used to probe the total spin of the quantum dot. Such a probe requires less stringent experimental conditions than the Kondo effect, which provides the same information. We show that first-order contributions can be partially or even fully coherent. This contrasts with the sequential-tunneling picture, which describes first-order transport as a sequence of incoherent tunneling processes. We predict bias-voltage induced Aharonov-Bohm oscillations of physical quantities which are independent of flux in the linear-response regime. Going beyond the Onsager relations we analyze the relations between the space symmetry group of the setup and the flux-dependent non-linear conductance.Comment: 22 pages, 11 figure