The composition of heavy molecular ions inside the ionopause of Comet Halley

The RPA2-PICCA instrument aboard the Giotto spacecraft obtained 10-210 amu mass spectral of cold thermal molecular ions in the coma of Comet Halley. The dissociation products of the long chain formaldehyde polymer polyoxymethylene (POM) have recently been proposed as the dominant complex molecules in the coma of Comet Halley; however, POM alone cannot account for all of the features of the high resolution spectrum. An important component of the dust at Comet Halley is particles highly enriched in carbon, hydrogen, oxygen, and nitrogen relative to the composition of carbonaceous chondrites. Since this dust could be a source for the heavy molecules observed by PICCA, a search was conducted for other chemical species by determining all the molecules with mass between 20 and 120 amu which can be made from the relatively abundant C, H, O, and N, without regard to chemical structure

MESSENGER Magnetic Field Observations of Upstream Ultra-Low Frequency Waves at Mercury

The region upstream from a planetary bow shock is a natural plasma laboratory containing a variety of wave particle phenomena. The study of foreshocks other than the Earth's is important for extending our understanding of collisionless shocks and foreshock physics since the bow shock strength varies with heliocentric distance from the Sun, and the sizes of the bow shocks are different at different planets. The Mercury's bow shock is unique in our solar system as it is produced by low Mach number solar wind blowing over a small magnetized body with a predominately radial interplanetary magnetic field. Previous observations of Mercury upstream ultra-low frequency (ULF) waves came exclusively from two Mercury flybys of Mariner 10. The MESSENGER orbiter data enable us to study of upstream waves in the Mercury's foreshock in depth. This paper reports an overview of upstream ULF waves in the Mercury's foreshock using high-time resolution magnetic field data, 20 samples per second, from the MESSENGER spacecraft. The most common foreshock waves have frequencies near 2 Hz, with properties similar to the I-Hz waves in the Earth's foreshock. They are present in both the flyby data and in every orbit of the orbital data we have surveyed. The most common wave phenomenon in the Earth's foreshock is the large-amplitude 30-s waves, but similar waves at Mercury have frequencies at near 0.1 Hz and occur only sporadically with short durations (a few wave cycles). Superposed on the "30-s" waves, there are spectral peaks at near 0.6 Hz, not reported previously in Mariner 10 data. We will discuss wave properties and their occurrence characteristics in this paper

Two satellite study of substorm expansion near geosynchronous orbit

During several time intervals in 1979–1980 the satellites GEOS-2 and SCATHA were situated relatively close on the nightside of the Earth at geosynchronous distances. Several substorm events were identified during these periods. The event considered in this paper was recorded on 22 May 1979, when the satellites were separated by less than 30min in local time around 21:00 LT. The observed 45 to 60 s delay of magnetic signatures observed at the two s/c indicates a westward expansion of ~7.7°/min. At the two s/c, the magnetic signatures are, in particular for the azimuthal magnetic field components, quite different. At GEOS-2, being close to the magnetic equator, the dominant feature is a dipolarization with a weak field-aligned current signature corresponding to a symmetric current which cancels at the equator. On SCATHA, however, being close to the current sheet boundary, the azimuthal magnetic field indicates a strong field-aligned Birkeland current structure. On both s/c the first indication of an approaching substorm was an increase in the high energy ion flux followed by a reduction in the flux intensity of energetic electrons and a further tailward stretching of the magnetic field, starting ~2min before the onset of the magnetic field dipolarization. The tailward stretching, the observed variations of the magnetic field components, and the subsequent dipolarization are interpreted in terms of an azimuthally tilted field-aligned current system passing the s/c on the tailward side from east to west. The westward expansion and dipolarization observed at the two s/c are consistent with the propagation of a Rayleigh-Taylor type instability. The increased radial ion flux corresponds to the <i><b>E</b></i>x<i><b>B</b></i>-drift due to the substorm associated electric field.<br><br> <b>Key words.</b> Magnetospheric physics (storms and substorms; plasma waves and instabilities; current systems

Observation of kinetic Alfven waves excited at substorm onset

Ground-based observations of locally confined, very intense, drifting current systems by the EISCAT magnetometer cross in correlation with GEOS-2 measurements will be explained in terms of kinetic Alfven waves. Particle and magnetic flux measurements on GEOS-2 indicate an excitation of the waves at the inner edge of the Earthward-drifting plasma sheet by resonance mode conversion from hydromagnetic surface waves. The collapsing tail-like field configuration itself is identified as the surface wave. The comparison of theoretically deduced quantities with observational results reveals a satisfactory agreement between observations and theory.           ARK: https://n2t.net/ark:/88439/y003986 Permalink: https://geophysicsjournal.com/article/293 &nbsp

Re-Evaluation of Sinocastor (Rodentia: Castoridae) with Implications on the Origin of Modern Beavers

The extant beaver, Castor, has played an important role shaping landscapes and ecosystems in Eurasia and North America, yet the origins and early evolution of this lineage remain poorly understood. Here we use a geometric morphometric approach to help re-evaluate the phylogenetic affinities of a fossil skull from the Late Miocene of China. This specimen was originally considered Sinocastor, and later transferred to Castor. The aim of this study was to determine whether this form is an early member of Castor, or if it represents a lineage outside of Castor. The specimen was compared to 38 specimens of modern Castor (both C. canadensis and C. fiber) as well as fossil specimens of C. fiber (Pleistocene), C. californicus (Pliocene) and the early castorids Steneofiber eseri (early Miocene). The results show that the specimen falls outside the Castor morphospace and that compared to Castor, Sinocastor possesses a: 1) narrower post-orbital constriction, 2) anteroposteriorly shortened basioccipital depression, 3) shortened incisive foramen, 4) more posteriorly located palatine foramen, 5) longer rostrum, and 6) longer braincase. Also the specimen shows a much shallower basiocciptal depression than what is seen in living Castor, as well as prominently rooted molars. We conclude that Sinocastor is a valid genus. Given the prevalence of apparently primitive traits, Sinocastor might be a near relative of the lineage that gave rise to Castor, implying a possible Asiatic origin for Castor

Noncovalent Interactions by QMC: Speedup by One-Particle Basis-Set Size Reduction

While it is empirically accepted that the fixed-node diffusion Monte-Carlo (FN-DMC) depends only weakly on the size of the one-particle basis sets used to expand its guiding functions, limits of this observation are not settled yet. Our recent work indicates that under the FN error cancellation conditions, augmented triple zeta basis sets are sufficient to achieve a benchmark level of 0.1 kcal/mol in a number of small noncovalent complexes. Here we report on a possibility of truncation of the one-particle basis sets used in FN-DMC guiding functions that has no visible effect on the accuracy of the production FN-DMC energy differences. The proposed scheme leads to no significant increase in the local energy variance, indicating that the total CPU cost of large-scale benchmark noncovalent interaction energy FN-DMC calculations may be reduced.Comment: ACS book chapter, accepte

The role of oxygen ions in the formation of a bifurcated current sheet in the magnetotail

Cluster observations in the near-Earth magnetotail have shown that sometimes the current sheet is bifurcated, i.e. it is divided in two layers. The influence of magnetic turbulence on ion motion in this region is investigated by numerical simulation, taking into account the presence of both protons and oxygen ions. The magnetotail current sheet is modeled as a magnetic field reversal with a normal magnetic field component $B_n$, plus a three-dimensional spectrum of magnetic fluctuations $\delta {\bf B}$, which represents the observed magnetic turbulence. The dawn-dusk electric field E$_y$ is also included. A test particle simulation is performed using different values of $\delta {\bf B}$, E$_y$ and injecting two different species of particles, O$^+$ ions and protons. O$^+$ ions can support the formation of a double current layer both in the absence and for large values of magnetic fluctuations ($\delta B/B_0 = 0.0$ and $\delta B/B_0 \geq 0.4$, where B$_0$ is the constant magnetic field in the magnetospheric lobes).Comment: 8 pages, 8 figures. J. Geophys. Res., in pres

Remote and In Situ Observations of an Unusual Earth-Directed Coronal Mass Ejection from Multiple Viewpoints

During June 16-21, 2010, an Earth-directed Coronal Mass Ejection (CME) event was observed by instruments onboard STEREO, SOHO, MESSENGER and Wind. This event was the first direct detection of a rotating CME in the middle and outer corona. Here, we carry out a comprehensive analysis of the evolution of the CME in the interplanetary medium comparing in-situ and remote observations, with analytical models and three-dimensional reconstructions. In particular, we investigate the parallel and perpendicular cross section expansion of the CME from the corona through the heliosphere up to 1 AU. We use height-time measurements and the Gradual Cylindrical Shell (GCS) technique to model the imaging observations, remove the projection effects, and derive the 3-dimensional extent of the event. Then, we compare the results with in-situ analytical Magnetic Cloud (MC) models, and with geometrical predictions from past works. We nd that the parallel (along the propagation plane) cross section expansion agrees well with the in-situ model and with the Bothmer & Schwenn [1998] empirical relationship based on in-situ observations between 0.3 and 1 AU. Our results effectively extend this empirical relationship to about 5 solar radii. The expansion of the perpendicular diameter agrees very well with the in-situ results at MESSENGER ( 0:5 AU) but not at 1 AU. We also find a slightly different, from Bothmer & Schwenn [1998], empirical relationship for the perpendicular expansion. More importantly, we find no evidence that the CME undergoes a significant latitudinal over-expansion as it is commonly assume

High-density rhesus macaque oligonucleotide microarray design using early-stage rhesus genome sequence information and human genome annotations

BACKGROUND: Until recently, few genomic reagents specific for non-human primate research have been available. To address this need, we have constructed a macaque-specific high-density oligonucleotide microarray by using highly fragmented low-pass sequence contigs from the rhesus genome project together with the detailed sequence and exon structure of the human genome. Using this method, we designed oligonucleotide probes to over 17,000 distinct rhesus/human gene orthologs and increased by four-fold the number of available genes relative to our first-generation expressed sequence tag (EST)-derived array. RESULTS: We constructed a database containing 248,000 exon sequences from 23,000 human RefSeq genes and compared each human exon with its best matching sequence in the January 2005 version of the rhesus genome project list of 486,000 DNA contigs. Best matching rhesus exon sequences for each of the 23,000 human genes were then concatenated in the proper order and orientation to produce a rhesus "virtual transcriptome." Microarray probes were designed, one per gene, to the region closest to the 3' untranslated region (UTR) of each rhesus virtual transcript. Each probe was compared to a composite rhesus/human transcript database to test for cross-hybridization potential yielding a final probe set representing 18,296 rhesus/human gene orthologs, including transcript variants, and over 17,000 distinct genes. We hybridized mRNA from rhesus brain and spleen to both the EST- and genome-derived microarrays. Besides four-fold greater gene coverage, the genome-derived array also showed greater mean signal intensities for genes present on both arrays. Genome-derived probes showed 99.4% identity when compared to 4,767 rhesus GenBank sequence tag site (STS) sequences indicating that early stage low-pass versions of complex genomes are of sufficient quality to yield valuable functional genomic information when combined with finished genome information from a closely related species. CONCLUSION: The number of different genes represented on microarrays for unfinished genomes can be greatly increased by matching known gene transcript annotations from a closely related species with sequence data from the unfinished genome. Signal intensity on both EST- and genome-derived arrays was highly correlated with probe distance from the 3' UTR, information often missing from ESTs yet present in early-stage genome projects

Analysis of the Macaca mulatta transcriptome and the sequence divergence between Macaca and human

We report the initial sequencing and comparative analysis of the Macaca mulatta transcriptome. Cloned sequences from 11 tissues, nine animals, and three species (M. mulatta, M. fascicularis, and M. nemestrina) were sampled, resulting in the generation of 48,642 sequence reads. These data represent an initial sampling of the putative rhesus orthologs for 6,216 human genes. Mean nucleotide diversity within M. mulatta and sequence divergence among M. fascicularis, M. nemestrina, and M. mulatta are also reported