pH-induced structural changes in bacteriorhodopsin studied by Fourier transform infrared spectroscopy

Previous C13-NMR studies showed that two of the four internal aspartic acid residues (Asp-96 and Asp-115) of bacteriorhodopsin (bR) are protonated up to pH = 10, but no accurate pKa of these residues has been determined. In this work, infrared spectroscopy with the attenuated total reflection technique was used to characterize pH-dependent structural changes of ground-state, dark-adapted wild-type bacteriorhodopsin and its mutant (D96N) with aspartic acid-96 replaced by asparagine. Data indicated deprotonation of Asp-96 at high pH (pKa = 11.4 +/- 0.1), but no Asp-115 titration was observed. The analysis of the whole spectral region characteristic to complex conformational changes in the protein showed a more complicated titration with an additional pKa value (pKa1 = 9.3 +/- 0.3 and pKa2 = 11.5 +/- 0.2). Comparison of results obtained for bR and the D96N mutant of bR shows that the pKa approximately 11.5 characterizes not a direct titration of Asp-96 but a protein conformational change that makes Asp-96 accessible to the external medium

Two-photon polymerization with optimized spatial light modulator

The application of diffractive optical elements can enhance the efficiency of the two-photon polymerization (TPP) process by multiplying the polymerizing beams. Spatial light modulators (SLMs) can dynamically change the light intensity pattern used for polymerization, making single shot polymerization possible. Most reflective, liquid crystal-based instruments, however, suffer from various surface aberrations. In order to enable SLMs to generate suitable polymerizing beams for TPP, these aberrations need to be corrected. Several methods were introduced earlier to compensate SLM aberrations in different applications. For the nonlinear process of TPP, we developed and specifically characterized a correction procedure. We used a simple interferometric method to determine the surface distortion of the SLM, calculated a correcting hologram and confirmed the correction with the polymerization of test structures. The corrected SLM was capable of parallel polymerization of 3D structures with a quality achievable with non-SLM beams

Dimensionality constraints of light-induced rotation

We have studied the conditions of rotation induced by collimated light carrying no angular momentum. Objects of different shapes and optical properties were examined in the nontrivial case where the rotation axis is perpendicular to the direction of light propagation. This geometry offers important advantages for application as it fundamentally broadens the possible practical arrangements to be realised. We found that collimated light cannot drive permanent rotation of 2D or prism-like 3D objects (i.e., fixed cross-sectional profile along the rotation axis) in the case of fully reflective or fully transparent materials. Based on both geometrical optics simulations and theoretical analysis, we derived a general condition for rotation induced by collimated light carrying no angular momentum valid for any arrangement: Permanent rotation is not possible if the scattering interaction is two-dimensional and lossless. In contrast, light induced rotation can be sustained if partial absorption is present or the object has specific true 3D geometry. We designed, simulated, fabricated, and experimentally tested a microscopic rotor capable of rotation around an axis perpendicular to the illuminating light. (c) 2015 AIP Publishing LLC

Коммуникативные аспекты языка и культуры. Ч. 2

В сборнике рассматриваются актуальные проблемы лексикологии, в том числе фразеологии, функциональные аспекты когнитивных и лингвокультурологических исследований, дискурсы, жанры и стратегии языковой и речевой коммуникации. Сборник адресован преподавателям вузов, школ, лицеев, аспирантам, студентам, практикующим переводчикам, всем, кого интересует мир языков и культур

Alignment of biological microparticles by polarized laser beam

The optical alignment of biological samples is of great relevance to microspectrometry and to the micromanipulation of single particles. Recently, Bayoudh et al. (J. Mod. Opt. 50:1581-1590, 2003) have shown that isolated, disk-shaped chloroplasts can be aligned in a controlled manner using an in-plane-polarized Gaussian beam trap, and suggested that this is due to their nonspherical shape. Here we demonstrate that the orientation of various micrometer-sized isolated biological particles, trapped by optical tweezers, can be altered in a controlled way by changing the plane of linear polarization of the tweezers. In addition to chloroplasts, we show that subchloroplast particles of small size and irregular overall shape, aggregated photosynthetic light-harvesting protein complexes as well as chromosomes can be oriented with the linearly polarized beam of the tweezers. By using a laser scanning confocal microscope equipped with a differential polarization attachment, we also measured the birefringence of magnetically oriented granal chloroplasts, and found that they exhibit strong birefringence with large local variations, which appears to originate from stacked membranes. The size and sign of the birefringence are such that the resulting anisotropic interaction with the linearly polarized laser beam significantly contributes to the torque orienting the chloroplasts

Wave-guided optical waveguides

This work primarily aims to fabricate and use two photon polymerization (2PP) microstructures capable of being optically manipulated into any arbitrary orientation. We have integrated optical waveguides into the structures and therefore have freestanding waveguides, which can be positioned anywhere in the sample at any orientation using optical traps. One of the key aspects to the work is the change in direction of the incident plane wave, and the marked increase in the numerical aperture demonstrated. Hence, the optically steered waveguide can tap from a relatively broader beam and then generate a more tightly confined light at its tip. The paper contains both simulation, related to the propagation of light through the waveguide, and experimental demonstrations using our BioPhotonics Workstation. In a broader context, this work shows that optically trapped microfabricated structures can potentially help bridge the diffraction barrier. This structure-mediated paradigm may be carried forward to open new possibilities for exploiting beams from far-field optics down to the subwavelength domain. (C)2012 Optical Society of Americ

Integrated optical devices using bacteriorhodopsin as active nonlinear optical material

Coupling of optical data-processing devices with microelectronics, telecocommunication and sensory functions, is among the biggest challenges in molecular electronics. Intensive research is going on to find suitable nonlinear optical materials that could meet the demanding requirements of optoelectronic applications, especially regarding high sensitivity and stability. In addition to inorganic and organic crystals, biological molecules have also been considered for use in integrated optics, among which the bacterial chromoprotein, bacteriorhodopsin (bR) generated the most interest. bR undergoes enormous absorption and concomitant refractive index changes upon initiation of a cyclic series of photoreactions by a burst of actinic light. This effect can be exploited to create highly versatile all-optical logical elements. We demonstrate the potential of this approach by investigating the static and dynamic response of several basic elements of integrated optical devices. Our results show that, due to its relatively high refractive index changes, bR can be used as an active nonlinear optical material to produce a variety of integrated optical switching and modulation effects