Interaction of two tributary glacier branches and implications for surge behavior

Thesis (M.S.) University of Alaska Fairbanks, 2018A glacier surge is a dynamic phenomenon where the glacier after a long period of quiescence, increases its velocities by up to two orders of magnitude. These surges tend to have complex interactions with tributaries, yet the role of these tributary interactions towards glacier surging has yet to be fully investigated. In this work we construct a synthetic glacier with an adjustable tributary intersection angle to study tributary interaction with the trunk glacier. The geometry we choose is loosely based on the main trunk and tributary interaction of Black Rapids Glacier, AK, USA, which last surged in 1936-1937. We investigate surface elevations, medial moraine locations, and erosive power at the bed of the glacier in response to our adjustable domain and relative flux. A nonlinear relationship between tributary flux and surface elevations is found that indicates flow restrictions can occur with geometries like Black Rapids Glacier. These flow restrictions cause increased ice thicknesses up-glacier which can lead to surges via increased stresses

Incorporation of cytochrome oxidase into cardiolipin bilayers and induction of nonlamellar phases.

Cytochrome oxidase from beef heart has been lipid-substituted with beef heart cardiolipin. The lipid phase behavior and protein aggregation state of the reconstituted complexes have been studied with 31P NMR, freeze-fracture electron microscopy, and saturation-transfer ESR of the spin-labeled protein. In the absence of salt, the lipid has a lamellar arrangement, and the protein is integrated and uniformly distributed in the membrane vesicles and undergoes rapid rotational diffusion. The presence of the protein stabilizes the cardiolipin lamellar phase against salt-induced transitions to the inverted hexagonal phase. The threshold salt concentration becomes higher and the extent of conversion becomes lower with decreasing lipid:protein ratio. In high salt, lamellar-phase lipid with integrated protein coexists with hexagonal-phase lipid free of protein, and the rotational diffusion of the protein is drastically reduced as a result of the high packing density

Large-scale instabilities in a STOVL upwash fountain

The fountain flow created by two underexpanded axisymmetric, turbulent jets impinging on a ground plane was studied through the use of laser-based experimental techniques. Velocity and turbulence data were acquired in the jet and fountain flow regions using laser doppler velocimetry and particle image velocimetry. Profiles of mean and rms velocities along the jet centreline are presented for nozzle pressure ratios of two, three and four. The unsteady nature of the fountain flow was examined and the presence of large-scale coherent structures identified. A spectral analysis of the fountain flow data was performed using the Welch method. The results have relevance to ongoing studies of the fountain flow using large eddy simulation techniques

A sound card based multi-channel frequency measurement system

For physical processes which express themselves as a frequency, for example magnetic field measurements using optically-pumped alkali-vapor magnetometers, the precise extraction of the frequency from the noisy signal is a classical problem. We describe herein a frequency measurement system based on an inexpensive commercially available computer sound card coupled with a software single-tone estimator which reaches Cram\'er--Rao limited performance, a feature which commercial frequency counters often lack. Characterization of the system and examples of its successful application to magnetometry are presented.Comment: 4 pages, 3 figures, 1 tabl

Remarks on the derivation of Gross-Pitaevskii equation with magnetic Laplacian

The effective dynamics for a Bose-Einstein condensate in the regime of high dilution and subject to an external magnetic field is governed by a magnetic Gross-Pitaevskii equation. We elucidate the steps needed to adapt to the magnetic case the proof of the derivation of the Gross-Pitaevskii equation within the "projection counting" scheme

Microfluidics for protein biophysics

Microfluidics has the potential to transform experimental approaches across the life sciences. In this review, we discuss recent advances enabled by the development and application of microfluidic approaches to protein biophysics. We focus on areas where key fundamental features of microfluidics open up new possibilities and present advantages beyond low volumes and short time-scale analysis, conventionally provided by microfluidics. We discuss the two most commonly used forms of microfluidic technology, single-phase laminar flow and multiphase microfluidics. We explore how the understanding and control of the characteristic physical features of the microfluidic regime, the integration of microfluidics with orthogonal systems and the generation of well-defined microenvironments can be used to develop novel devices and methods in protein biophysics for sample manipulation, functional and structural studies, detection and material processing

Probing quasiparticle excitations in a hybrid single electron transistor

We investigate the behavior of quasiparticles in a hybrid electron turnstile with the aim of improving its performance as a metrological current source. The device is used to directly probe the density of quasiparticles and monitor their relaxation into normal metal traps. We compare different trap geometries and reach quasiparticle densities below 3um^-3 for pumping frequencies of 20 MHz. Our data show that quasiparticles are excited both by the device operation itself and by the electromagnetic environment of the sample. Our observations can be modelled on a quantitative level with a sequential tunneling model and a simple diffusion equation

Experimental investigation of some aspects of insect-like flapping flight aerodynamics for application to micro air vehicles

Insect-like flapping flight offers a power-efficient and highly manoeuvrable basis for micro air vehicles for indoor applications. Some aspects of the aerodynamics associated with the sweeping phase of insect wing kinematics are examined by making particle image velocimetry measurements on a rotating wing immersed in a tank of seeded water. The work is motivated by the paucity of data with quantified error on insect-like flapping flight, and aims to fill this gap by providing a detailed description of the experimental setup, quantifying the uncertainties in the measurements and explaining the results. The experiments are carried out at two Reynolds numbers-500 and 15,000-accounting for scales pertaining to many insects and future flapping-wing micro air vehicles, respectively. The results from the experiments are used to describe prominent flow features, and Reynolds number-related differences are highlighted. In particular, the behaviour of the leading-edge vortex at these Reynolds numbers is studied and the presence of Kelvin-Helmholtz instability observed at the higher Reynolds number in computational fluid dynamics calculations is also verified

Absolute quantification of the host-to-parasite DNA ratio in Theileria parva-infected lymphocyte cell lines

Theileria parva is a tick-transmitted intracellular apicomplexan pathogen of cattle in sub-Saharan Africa that causes East Coast fever (ECF). ECF is an acute fatal disease that kills over one million cattle annually, imposing a tremendous burden on African small-holder cattle farmers. The pathology and level of T. parva infections in its wildlife host, African buffalo (Syncerus caffer), and in cattle are distinct. We have developed an absolute quantification method based on quantitative PCR (qPCR) in which recombinant plasmids containing single copy genes specific to the parasite (apical membrane antigen 1 gene, ama1) or the host (hypoxanthine phosphoribosyltransferase 1, hprt1) are used as the quantification reference standards. Our study shows that T. parva and bovine cells are present in similar numbers in T. parva-infected lymphocyte cell lines and that consequently, due to its much smaller genome size, T. parva DNA comprises between 0.9% and 3% of the total DNA samples extracted from these lines. This absolute quantification assay of parasite and host genome copy number in a sample provides a simple and reliable method of assessing T. parva load in infected bovine lymphocytes, and is accurate over a wide range of host-to-parasite DNA ratios. Knowledge of the proportion of target DNA in a sample, as enabled by this method, is essential for efficient high-throughput genome sequencing applications for a variety of intracellular pathogens. This assay will also be very useful in future studies of interactions of distinct host-T. parva stocks and to fully characterize the dynamics of ECF infection in the field