Holistic Slowdown Driven Scheduling and Resource Management for Malleable Jobs

In job scheduling, the concept of malleability has been explored since many years ago. Research shows that malleability improves system performance, but its utilization in HPC never became widespread. The causes are the difficulty in developing malleable applications, and the lack of support and integration of the different layers of the HPC software stack. However, in the last years, malleability in job scheduling is becoming more critical because of the increasing complexity of hardware and workloads. In this context, using nodes in an exclusive mode is not always the most efficient solution as in traditional HPC jobs, where applications were highly tuned for static allocations, but offering zero flexibility to dynamic executions. This paper proposes a new holistic, dynamic job scheduling policy, Slowdown Driven (SD-Policy), which exploits the malleability of applications as the key technology to reduce the average slowdown and response time of jobs. SD-Policy is based on backfill and node sharing. It applies malleability to running jobs to make room for jobs that will run with a reduced set of resources, only when the estimated slowdown improves over the static approach. We implemented SD-Policy in SLURM and evaluated it in a real production environment, and with a simulator using workloads of up to 198K jobs. Results show better resource utilization with the reduction of makespan, response time, slowdown, and energy consumption, up to respectively 7%, 50%, 70%, and 6%, for the evaluated workloads

Polyhydroxyalkanoate (PHA) production from sludge and municipal wastewater treatment

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Evaluation of enzymatic extract with lipase activity of yarrowia lipolytica. an application of data mining for the food industry wastewater treatment

The object of this research was to obtain the Crude Enzymatic Extract (CEE) of Yarrowia lipolytica ATCC 9773, in the medium of 30% Water of Sales (SW) applying a biologically treatment to three different concentrations yeast inoculum food wastewater, collected from cheese and whey production. It was evaluated the behavior of the inoculum in a suitable medium that stimulates lipids biodegradation. The standard liquid-liquid partition method SM 5520 B was used to quantify fat and oil removal for each concentration of yeast, before treatment and post treatment. The Industrial Fat effluent was characterized by physical chemical patterns, and two treatments were evaluated; Treatment 1 consisted of pH 5.0 and treatment 2 with a pH of 6.5, both with the following characteristics; Concentration of inoculum 8% 12% and 16% at 27Â °C temperature and evaluation time 32Â h. The best results (2.702Â mg/L fat and 83% degradation oil) were found to be pH 5.0, 16% concentration and 27Â °C, BOD5, and COD decreased by 43.07% and 44.35%, respectively during the 32Â h; For pH 6.5, 8% concentration at 32Â h and at room temperature, degraded 2.177Â mg/L fat and oil (67% degradation); The BOD5, and COD decreased by 37.93% and 39.19%, in the same time span. The treatment at pH 5.0 inoculum concentration of 16% was effective in removing 83% of the volume of fats and oil in the effluent, representing a useful tool for the wastewater treatment

Digestibilidade de nutrientes e balanço de nitrogênio em caprinos alimentados com dietas contendo mandioca e algaroba.

Avaliaram-se o consumo, a digestibilidade dos nutrientes e o balanço de nitrogênio de dietas contendo silagem da parte aérea de mandioca (SILPAM), raspa de mandioca (RM) e farelo da vagem de algaroba (FVA) com diferentes proporções de concentrado (0, 20, 40 e 60%). Utilizou-se 20 caprinos mestiços, com idade média de 8 meses, castrados, com peso vivo médio inicial de 17 kg, confinados, distribuídos em um delineamento inteiramente casualizado. A adição de concentrados às dietas não influenciou (P>0,05) os consumos (g/dia, %PV, g/UTM) de MS, PB e MO, com exceção do EE, do FDN e FDA em %PV e g/UTM que apresentaram redução (P0,05) com a adição de concentrados às dietas. Dietas contendo silagem da parte aérea e raspa da mandioca e farelo da vagem de algaroba associada a concentrados para caprinos em terminação, não compromete o consumo, a digestibilidade e o balanço de nitrogênio de caprinos

Características morfométricas e da carcaça de tambaqui abatidos com diferentes pesos.

Peixe de destaque na piscicultura nacional, o tambaqui é a espécie nativa mais cultivada no Brasil em virtude da sua facilidade de produção e boa aceitação no mercado. Neste contexto, a pesquisa teve como objetivo avaliar as características morfométricas e da carcaça de tambaqui abatidos com diferentes pesos. Foram utilizados vinte e quatro tambaquis, em que os tratamentos (T) foram em função do peso vivo dos animais constituídos por T1: tambaquis entre 1 e 1,5 kg, T2: entre 2 e 2,5 kg e T3: entre 3 e 3,5 kg, distribuídos em um delineamento inteiramente casualizado. Todas as medidas morfométricas aumentaram (P<0,01) à medida que se elevou o peso ao abate dos animais. As razões morfométricas comprimento da cabeça/comprimento padrão (CC/CP), largura do tronco/comprimento do tronco (LT/CT), altura do tronco/comprimento do tronco (AT/CT) e altura do tronco/comprimento padrão (AT/CP) reduziram (P<0,01) com o aumento do peso. O peso de carcaça com e sem cabeça e de tronco limpo, assim como os dos componentes não-carcaça também aumentou (P<0,01), com exceção do rendimento do peixe eviscerado que foi maior (P<0,01) e do rendimento das vísceras que foi menor (P<0,05) nos animais abatidos entre 2,0 e 2,5 kg. Tambaquis abatidos com peso vivo entre 2,0 e 2,5 kg apresentam maior rendimento de carcaça e menor rendimento de vísceras

Feeding behavior of lambs fed diets containing old man saltbush hay.

This study evaluated the behavior and performance of lambs fed diets containing increasing levels of old man saltbush hay plus concentrate

Control of sulphide during anaerobic treatment of S-containing wastewaters by adding limited amounts of oxygen or nitrate

Sulphide generated during anaerobic treatment of S-containing wastewaters represents an environmental problem. Adding limited amounts of oxygen or nitrate (or nitrite) to biologically (or chemically) oxidise sulphide forms a simple process level strategy to control this problem. This short review evaluates the feasibility and limitations of this strategy on the basis of the results of bioreactor studies.Sulphide generated during anaerobic treatment of S-containing wastewaters represents an environmental problem. Adding limited amounts of oxygen or nitrate (or nitrite) to biologically (or chemically) oxidise sulphide forms a simple process level strategy to control this problem. This short review evaluates the feasibility and limitations of this strategy on the basis of the results of bioreactor studies.Spanish Ministry of Education and Science; AEA Technology Environment; Nova Energie; The Swedish Gas Centre; University of Southern Denmark

Comparative and Joint Analysis of Two Metagenomic Datasets from a Biogas Fermenter Obtained by 454-Pyrosequencing

Biogas production from renewable resources is attracting increased attention as an alternative energy source due to the limited availability of traditional fossil fuels. Many countries are promoting the use of alternative energy sources for sustainable energy production. In this study, a metagenome from a production-scale biogas fermenter was analysed employing Roche's GS FLX Titanium technology and compared to a previous dataset obtained from the same community DNA sample that was sequenced on the GS FLX platform. Taxonomic profiling based on 16S rRNA-specific sequences and an Environmental Gene Tag (EGT) analysis employing CARMA demonstrated that both approaches benefit from the longer read lengths obtained on the Titanium platform. Results confirmed Clostridia as the most prevalent taxonomic class, whereas species of the order Methanomicrobiales are dominant among methanogenic Archaea. However, the analyses also identified additional taxa that were missed by the previous study, including members of the genera Streptococcus, Acetivibrio, Garciella, Tissierella, and Gelria, which might also play a role in the fermentation process leading to the formation of methane. Taking advantage of the CARMA feature to correlate taxonomic information of sequences with their assigned functions, it appeared that Firmicutes, followed by Bacteroidetes and Proteobacteria, dominate within the functional context of polysaccharide degradation whereas Methanomicrobiales represent the most abundant taxonomic group responsible for methane production. Clostridia is the most important class involved in the reductive CoA pathway (Wood-Ljungdahl pathway) that is characteristic for acetogenesis. Based on binning of 16S rRNA-specific sequences allocated to the dominant genus Methanoculleus, it could be shown that this genus is represented by several different species. Phylogenetic analysis of these sequences placed them in close proximity to the hydrogenotrophic methanogen Methanoculleus bourgensis. While rarefaction analyses still indicate incomplete coverage, examination of the GS FLX Titanium dataset resulted in the identification of additional genera and functional elements, providing a far more complete coverage of the community involved in anaerobic fermentative pathways leading to methane formation