Library of Coastal Vulnerability Indicators guidance document

The Resilience-Increasing Strategies for Coasts – Toolkit (RISC-KIT) FP7 EU project (2013-2017) aims to produce a set of three innovative and EU-coherent open-source and open-access methods, tools and management approaches (the RISC-KIT) in support of coastal managers, decision-makers and policy makers to reduce risk and increase resilience to low-frequency, high impact hydro-meteorological events. Risk is defined within this project as the product of the probability of a hazard, the exposure of receptors and their vulnerability. Representing the vulnerability and the potential role of DRR in their reduction is crucial for supporting the decision. As such a specific task of the RISC-KIT project (Task 2.2) is dedicated to developing a Library of Vulnerability Indicators to input in the RISC-KIT Toolkit and to test the tools on 11 case studies. The deliverable “Coastal Vulnerability Indicator Library” is composed of a Microsoft Excel database and a guidance document. The deliverable introduces the necessary concepts and methods, provides a review and a collection of existing indicators and proposes methodologies for developing new indicators. The Library has been constructed around four categories: Built Environment, Population, Ecosystem and Systems. The Library also identifies Disaster Reduction Measures influencing vulnerability and proposes methods to include within the assessment of vulnerability

Coastal risk assessment framework guidance document

The Resilience-Increasing Strategies for Coasts – Toolkit (RISC-KIT) FP7 EU project (2013-2017) aims to produce a set of three innovative and EU-coherent open-source and open-access methods, tools and management approaches (the RISC-KIT) in support of coastal managers, decision-makers and policy makers to reduce risk and increase resilience to low-frequency, high impact hydro-meteorological events. The Coastal Risk Assessment Framework (CRAF) is the first element of the risk assessment suite applied at a regional scale and permits a comprehensive and systematic approach to undertaking risk assessment at a variety of levels of detail. In particular, the approach reveals potential hotspots along the coasts. Hotspots are defined in the Toolkit as specific locations where high-resolution modelling and risk assessment are required to assess the coastal risk and to design and compare disaster risk reduction measures. As such, hotspots, or groups of hotspots, should be indicative of those areas where risk is highest. To do so the CRAF consists of a 2-phase approach, Phase 1 is a coastal-index approach to identifying potential hotspots, whereas Phase 2 utilises a suite of more complex modelling processes to rank these hotpots. The coastal INtegrated DisRuption Assessment model (INDRA) has specifically been developed as an open-source and open-access model for this purpose. This document provides guidance to CRAF users on both approaches, as well as explanations on the proposed methodologies. The CRAF is a prototype and will be trialled on the RISC-KIT case studies (WP5). Limitations in its application, the potential for a full application and the needs for further development will be discussed in Deliverable 5.1

Magnetic Reconnection with Asymmetry in the Outflow Direction

Magnetic reconnection with asymmetry in the outflow direction occurs in the Earth's magnetotail, coronal mass ejections, flux cancellation events, astrophysical disks, spheromak merging experiments, and elsewhere in nature and the laboratory. A control volume analysis is performed for the case of steady antiparallel magnetic reconnection with asymmetric downstream pressure, which is used to derive scaling relations for the outflow velocity from each side of the current sheet and the reconnection rate. Simple relationships for outflow velocity are presented for the incompressible case and the case of symmetric downstream pressure but asymmetric downstream density. Asymmetry alone is not found to greatly affect the reconnection rate. The flow stagnation point and magnetic field null do not coincide in a steady state unless the pressure gradient is negligible at the flow stagnation point.Comment: 12 pages, 8 figures. Submitted to JGR. Any comments will be appreciate

Small Change: Economics and the British coin-tree

This is the accepted manuscript for the following article: Ceri Houlbrook, “Small Change: Economics and the British coin-tree”, Post Medieval Archaeology, Vol. 49(1), June 2015. The final published version can be found at: http://www.tandfonline.com/doi/full/10.1179/0079423615Z.00000000074 © Society for Post-Medieval Archaeology 2015Throughout the c.2000 year period coins have been circulated in Britain, they have also been ritually employed, most notably as votive deposits. Focusing specifically on the understudied custom of the British coin-tree, whereby coins are ritually embedded into the barks of trees, this paper considers the coin’s role and applicability as a deposit. It aims to demonstrate that our understanding of the coin’s past, present, and future ritual employment is not only aided by a consideration of economics and the coin’s secular function; it would be utterly incomplete without it.Peer reviewedFinal Accepted Versio

Structure, function and diversity of the healthy human microbiome

Author Posting. © The Authors, 2012. This article is posted here by permission of Nature Publishing Group. The definitive version was published in Nature 486 (2012): 207-214, doi:10.1038/nature11234.Studies of the human microbiome have revealed that even healthy individuals differ remarkably in the microbes that occupy habitats such as the gut, skin and vagina. Much of this diversity remains unexplained, although diet, environment, host genetics and early microbial exposure have all been implicated. Accordingly, to characterize the ecology of human-associated microbial communities, the Human Microbiome Project has analysed the largest cohort and set of distinct, clinically relevant body habitats so far. We found the diversity and abundance of each habitat’s signature microbes to vary widely even among healthy subjects, with strong niche specialization both within and among individuals. The project encountered an estimated 81–99% of the genera, enzyme families and community configurations occupied by the healthy Western microbiome. Metagenomic carriage of metabolic pathways was stable among individuals despite variation in community structure, and ethnic/racial background proved to be one of the strongest associations of both pathways and microbes with clinical metadata. These results thus delineate the range of structural and functional configurations normal in the microbial communities of a healthy population, enabling future characterization of the epidemiology, ecology and translational applications of the human microbiome.This research was supported in part by National Institutes of Health grants U54HG004969 to B.W.B.; U54HG003273 to R.A.G.; U54HG004973 to R.A.G., S.K.H. and J.F.P.; U54HG003067 to E.S.Lander; U54AI084844 to K.E.N.; N01AI30071 to R.L.Strausberg; U54HG004968 to G.M.W.; U01HG004866 to O.R.W.; U54HG003079 to R.K.W.; R01HG005969 to C.H.; R01HG004872 to R.K.; R01HG004885 to M.P.; R01HG005975 to P.D.S.; R01HG004908 to Y.Y.; R01HG004900 to M.K.Cho and P. Sankar; R01HG005171 to D.E.H.; R01HG004853 to A.L.M.; R01HG004856 to R.R.; R01HG004877 to R.R.S. and R.F.; R01HG005172 to P. Spicer.; R01HG004857 to M.P.; R01HG004906 to T.M.S.; R21HG005811 to E.A.V.; M.J.B. was supported by UH2AR057506; G.A.B. was supported by UH2AI083263 and UH3AI083263 (G.A.B., C. N. Cornelissen, L. K. Eaves and J. F. Strauss); S.M.H. was supported by UH3DK083993 (V. B. Young, E. B. Chang, F. Meyer, T. M. S., M. L. Sogin, J. M. Tiedje); K.P.R. was supported by UH2DK083990 (J. V.); J.A.S. and H.H.K. were supported by UH2AR057504 and UH3AR057504 (J.A.S.); DP2OD001500 to K.M.A.; N01HG62088 to the Coriell Institute for Medical Research; U01DE016937 to F.E.D.; S.K.H. was supported by RC1DE0202098 and R01DE021574 (S.K.H. and H. Li); J.I. was supported by R21CA139193 (J.I. and D. S. Michaud); K.P.L. was supported by P30DE020751 (D. J. Smith); Army Research Office grant W911NF-11-1-0473 to C.H.; National Science Foundation grants NSF DBI-1053486 to C.H. and NSF IIS-0812111 to M.P.; The Office of Science of the US Department of Energy under Contract No. DE-AC02-05CH11231 for P.S. C.; LANL Laboratory-Directed Research and Development grant 20100034DR and the US Defense Threat Reduction Agency grants B104153I and B084531I to P.S.C.; Research Foundation - Flanders (FWO) grant to K.F. and J.Raes; R.K. is an HHMI Early Career Scientist; Gordon&BettyMoore Foundation funding and institutional funding fromthe J. David Gladstone Institutes to K.S.P.; A.M.S. was supported by fellowships provided by the Rackham Graduate School and the NIH Molecular Mechanisms in Microbial Pathogenesis Training Grant T32AI007528; a Crohn’s and Colitis Foundation of Canada Grant in Aid of Research to E.A.V.; 2010 IBM Faculty Award to K.C.W.; analysis of the HMPdata was performed using National Energy Research Scientific Computing resources, the BluBioU Computational Resource at Rice University

A framework for human microbiome research

A variety of microbial communities and their genes (the microbiome) exist throughout the human body, with fundamental roles in human health and disease. The National Institutes of Health (NIH)-funded Human Microbiome Project Consortium has established a population-scale framework to develop metagenomic protocols, resulting in a broad range of quality-controlled resources and data including standardized methods for creating, processing and interpreting distinct types of high-throughput metagenomic data available to the scientific community. Here we present resources from a population of 242 healthy adults sampled at 15 or 18 body sites up to three times, which have generated 5,177 microbial taxonomic profiles from 16S ribosomal RNA genes and over 3.5 terabases of metagenomic sequence so far. In parallel, approximately 800 reference strains isolated from the human body have been sequenced. Collectively, these data represent the largest resource describing the abundance and variety of the human microbiome, while providing a framework for current and future studies

Library of Coastal Vulnerability Indicators

The Resilience-Increasing Strategies for Coasts – Toolkit (RISC-KIT) FP7 EU project (2013-2017) aims to produce a set of three innovative and EU-coherent open-source and open-access methods, tools and management approaches (the RISC-KIT) in support of coastal managers, decision-makers and policy makers to reduce risk and increase resilience to low-frequency, high impact hydro-meteorological events. Risk is defined within this project as the product of the probability of a hazard, the exposure of receptors and their vulnerability. Representing the vulnerability and the potential role of DRR in their reduction is crucial for supporting the decision. As such a specific task of the RISC-KIT project (Task 2.2) is dedicated to developing a Library of Vulnerability Indicators to input in the RISC-KIT Toolkit and to test the tools on 11 case studies. The deliverable “Coastal Vulnerability Indicator Library” is composed of a Microsoft Excel database and a guidance document. The deliverable introduces the necessary concepts and methods, provides a review and a collection of existing indicators and proposes methodologies for developing new indicators. The Library has been constructed around four categories: Built Environment, Population, Ecosystem and Systems. The Library also identifies Disaster Reduction Measures influencing vulnerability and proposes methods to include within the assessment of vulnerability