Strict polynomial functors and coherent functors

We build an explicit link between coherent functors in the sense of Auslander and strict polynomial functors in the sense of Friedlander and Suslin. Applications to functor cohomology are discussed.Comment: published version, 24 pages. Section 2.7 reorganized, and notational distinction between left and right tensor product reinstalle

Lipogenesis and redox balance in nitrogen-fixing pea bacteroids

Within legume root nodules, rhizobia differentiate into bacteroids that oxidise host-derived dicarboxylic acids, which is assumed to occur via the TCA-cycle to generate NAD(P)H for reduction of N2. Metabolic flux analysis of laboratory grown Rhizobium leguminosarum showed that the flux from 13C-succinate was consistent with respiration of an obligate aerobe growing on a TCA-cycle intermediate as the sole carbon source. However, the instability of fragile pea bacteroids prevented their steady state labelling under N2-fixing conditons. Therefore, comparitive metabolomic profiling was used to compare free-living R. leguminosarum with pea bacteroids. While the TCA-cycle was shown to be essential for maximal rates of N2-fixation, pyruvate (5.5-fold down), acetyl-CoA (50-fold down), free coenzyme A (33-fold) and citrate (4.5-fold down) were much lower in bacteroids. Instead of completely oxidising acetyl-CoA, pea bacteroids channel it into both lipid and the lipid-like polymer poly-β-hydroxybutyrate (PHB), the latter via a type II PHB synthase that is only active in bacteroids. Lipogenesis may be a fundamental requirement of the redox poise of electron donation to N2 in all legume nodules. Direct reduction by NAD(P)H of the likely electron donors for nitrogenase, such as ferredoxin, is inconsistent with their redox potentials. Instead, bacteroids must balance the production of NAD(P)H from oxidation of acetyl-CoA in the TCA-cycle with its storage in PHB and lipids

Superstrings in type IIB R-R plane-wave in semi-light-cone gauge and conformal invariance

We reconsider the analysis done by Kazama and Yokoi in arXiv:0801.1561 (hep-th). We find that although the right vacuum of the theory is the one associated to massless normal ordering (MNO), phase space normal ordering (PNO) plays crucial role in the analysis in the following way. While defining the quantum energy-momentum (EM) tensor one needs to take into account the field redefinition relating the space-time field and the corresponding world-sheet coupling. We argue that for a simple off-shell ansatz for the background this field redefinition can be taken to be identity if the interaction term is ordered according to PNO. This definition reproduces the correct physical spectrum when the background is on-shell. We further show that the right way to extract the effective equation of motion from the Virasoro anomaly is to first order the anomaly terms according to PNO at a finite regularization parameter \eps and then take the \eps \to 0 limit. This prescription fixes an ambiguity in taking the limit for certain bosonic and fermionic contributions to the Virasoro anomaly and is the natural one to consider given the above definition of the EM tensor.Comment: 22 page

A new wrinkle on the enhancon

We generalize the basic enhancon solution of Johnson, Peet and Polchinski by constructing solutions without spherical symmetry. A careful consideration of boundary conditions at the enhancon surface indicates that the interior of the supergravity solution is still flat space in the general case. We provide some explicit analytic solutions where the enhancon locus is a prolate or oblate sphere.Comment: 19 pages, no figure

Who to help? Helping decisions in a cooperatively breeding bird with redirected care

Cooperative breeding sometimes occurs when adult breeders form groups following natal dispersal and mating. In such cases, individuals typically face a choice of social partner with whom to cooperate. Selecting appropriate social partners is crucial to maximising the fitness payoffs from cooperation, but our understanding of the criteria guiding partner choice is limited. Here, we analyse helping decisions by long-tailed tits (Aegithalos caudatus), which may redirect their care to assist breeders in raising offspring following the failure of their own nests. In this species, helpers prefer to help relatives at nearby nests, but it is unclear whether other criteria that may affect helper fitness also influence helping decisions. When choosing among broods of equivalent kinship, we found that helpers did not prefer those broods that offered the greatest indirect fitness returns. Further analyses revealed that helpers did not choose nests on the basis of brood size or age, but were more likely to help broods that were closer to their own failed nests and that were already being cared for by other helpers. Both effects likely reflect the limited choice available to helpers: although individuals breed close to relatives within kin neighbourhoods, a high rate of nest predation constrains helpers’ choice of broods. In other species where cooperatively breeding groups form after natal dispersal, a greater range of options may be available and here detailed analysis of group formation will be helpful for determining the decision rules that underpin partner choice and permit stable cooperation in the face of alternative options. Significance statement Cooperative breeding occurs most frequently when offspring delay dispersal from their natal site and help to care for their younger siblings. In some species, however, individuals first disperse and then come together as adults to cooperate in rearing young. In the latter case, multiple social partners may be available — what then determines which partner is helped? We studied partner choice in long-tailed tits, which may help to feed other broods if their own brood fails. When multiple related broods were available, individuals were more likely to help those close by but showed no preference for broods offering the greatest indirect fitness returns. One explanation for this result is that helping options for most individuals are limited by high levels of nest predation, favouring a simpler decision-making process based on identifying close relatives breeding in close proximity

Individual variation explains ageing patterns in a cooperatively breeding bird, the long-tailed tit Aegithalos caudatus

1. Alloparental care in cooperatively breeding species may alter breeder age-specific survival and reproduction and subsequently senescence. The helping behaviour itself might also undergo age-related change, and decisions to help in facultative cooperative breeders are likely to be affected by individual condition. 2. Helpers in long-tailed tits Aegithalos caudatus assist relatives after failing to raise their own brood, with offspring from helped nests being more likely to recruit into the breeding population. 3. Using data collected over 25 years, we examined the age trajectories of survival and reproduction in adult long-tailed tits to determine how these were affected by the presence or absence of helpers and how helper behaviour changed with age. 4. There was evidence for increased reproductive performance with breeder age, but no effect of age on the probability of survival. We found no evidence of significant senescent decline in survival or reproductive performance, although individuals accrued less inclusive fitness in their last year of life. Lifetime reproductive success was positively related to both reproductive life span and body mass. Within a season, breeders that were assisted by helpers enjoyed greater reproductive success through enhanced offspring recruitment in the following year. We found no evidence that age affected an individual's propensity to help, or the amount of indirect fitness accrued through helping. 5. We found a positive correlation between life span and multiple components of reproductive success, suggesting that individual variation in quality underpins age-related variation in fitness in this species. Helping decisions are driven by condition, and lifetime inclusive fitness of immigrants was predicted by body mass. These findings further support individual heterogeneity in quality being a major driver for fitness gains across the life course of long-tailed tits

Linking bone development on the caudal aspect of the distal phalanx with lameness during life

Claw horn disruption lesions (CHDL; sole hemorrhage, sole ulcer, and white line disease) cause a large proportion of lameness in dairy cattle, yet their etiopathogenesis remains poorly understood. Untreated CHDL may be associated with damage to the internal anatomy of the foot, including to the caudal aspect of the distal phalanx upon which bone developments have been reported with age and with sole ulcers at slaughter. The primary aim of this study was to assess whether bone development was associated with poor locomotion and occurrence of CHDL during a cow’s life. A retrospective cohort study imaged 282 hind claws from 72 Holstein-Friesian dairy cows culled from a research herd using X-ray micro–computed tomography (μ-CT; resolution: 0.11 mm). Four measures of bone development were taken from the caudal aspect of each distal phalanx, in caudal, ventral, and dorsal directions, and combined within each claw. Cow-level variables were constructed to quantify the average bone development on all hind feet (BD-Ave) and bone development on the most severely affected claw (BD-Max). Weekly locomotion scores (1–5 scale) were available from first calving. The variables BD-Ave and BD-Max were used as outcomes in linear regression models; the explanatory variables included locomotion score during life, age, binary variables denoting lifetime occurrence of CHDL and of infectious causes of lameness, and other cow variables. Both BD-Max and BD-Ave increased with age, CHDL occurrence, and an increasing proportion of locomotion scores at which a cow was lame (score 4 or 5). The models estimated that BD-Max would be 9.8 mm (SE 3.9) greater in cows that had been lame at >50% of scores within the 12 mo before slaughter (compared with cows that had been assigned no lame scores during the same period), or 7.0 mm (SE 2.2) greater if the cow had been treated for a CHDL during life (compared with cows that had not). Additionally, histology demonstrated that new bone development was osteoma, also termed “exostosis.” Age explained much of the variation in bone development. The association between bone development and locomotion score during life is a novel finding, and bone development appears specific to CHDL. Bone development on the most severely affected foot was the best explained outcome and would seem most likely to influence locomotion score. To stop irreparable anatomical damage within the foot, early identification of CHDL and effective treatment could be critical

Good images, effective messages? Working with students and educators on academic practice understanding

Work at Northumbria University has focussed on activity that extends opportunities for students to engage directly with the skills development necessary for sound academic practice. This has included highly visual campaigns on the "Plagiarism trap", providing access to Turnitin plagiarism detection software, guides and sessions to highlight use of associated referencing tools. Sessions on a variety of topics, such as supporting study skills and reading originality reports, have been provided for students on taught, undergraduate and postgraduate programmes. This provision has included students working on collaborative partners' sites and also those on research programmes. Alongside the activities with students, "designing out" approaches have been embedded in staff development within the educator community at Northumbria. Formative use of Turnitin is integrated throughout programmes and academic practice development is formally recognised within the University Learning and Teaching Strategy's focus on information literacy. This article outlines and reviews these activities in a critical institutional context and evaluates responses from a variety of students and educators to determine how effective these measures have been

Effects of routine treatment with nonsteroidal anti-inflammatory drugs at calving and when lame on the future probability of lameness and culling in dairy cows: A randomized controlled trial

Claw horn lesions (CHL) are reported as the most common cause of lameness in intensive dairy systems. Despite their prevalence, the underlying pathological mechanisms and preventive strategies for CHL remain poorly understood. Recent advances have pointed to the role of inflammation in disease aetiopathogenesis. Moderating inflammation from first calving may lead to long-term benefits and a viable intervention for treating and preventing disease. We conducted a 34-mo randomized controlled trial to investigate the effects of routine treatment with the nonsteroidal anti-inflammatory drug ketoprofen at calving and during treatment for lameness, on the future probability of lameness and culling, caused by exposure to normal farm conditions. A cohort of dairy heifers were recruited from a single, commercial dairy herd between January 8, 2018, and June 22, 2020, and randomly allocated to one of 4 treatment groups before first calving. The lactating herd was lameness scored every 2 wk on a 0 to 3 scale, to identify animals that became lame (single score ≥2a) and hence required treatment. Animals in group 1 received a therapeutic trim and a hoof block on the sound claw (if deemed necessary) every time they were treated for lameness. Animals in group 2 received the same treatment as group 1 with the addition of a 3-d course of ketoprofen (single dose daily) every time they were treated for lameness. Animals in group 3 received the same treatment as group 2 with the addition of a 3-d course of ketoprofen (single dose daily) starting 24 to 36 h after each calving. Animals in group 4 received a 3-d course of ketoprofen (single dose daily) every time they were identified with lameness. No therapeutic trim was administered to this group, unless they were identified as severely lame (a single score ≥3a). Animals were followed for the duration of the study (ending October 23, 2020). Probability of lameness was assessed by a lameness outcome score collected every 14 d. Data on culling was extracted from farm records. One hundred thirty-two animals were recruited to each group, with data from 438 animals included in the final analysis (111 in group 1, 117 in group 2, 100 in group 3, and 110 in group 4). Mixed effect logistic regression models were used to evaluate the effect of treatment group on the ongoing probability of lameness. Compared with the control group (group 1), animals in group 3 were less likely to become lame (odds ratio: 0.66) and severely lame (odds ratio: 0.28). A Cox proportional hazards survival model was used to investigate the effect of treatment group on time to culling. Compared with group 1, animals in groups 2 and 3 were at reduced risk of culling (hazard ratios: 0.55 and 0.56, respectively). The lameness effect size we identified was large and indicated that treating a cohort of animals with the group 3 protocol, would lead to an absolute reduction in population lameness prevalence of approximately 10% and severe lameness prevalence of 3%, compared with animals treated in accordance with conventional best practice (group 1)

Eta meson rescattering effects in the p + 6Li --> eta + 7Be reaction near threshold

The p + 6Li --> eta + 7Be reaction has been investigated with an emphasis on the eta meson and 7Be interaction in the final state. Considering the 6Li and 7Be nuclei to be alpha-d and alpha-3He clusters respectively, the reaction is modelled to proceed via the p + d [alpha] --> 3He [\alpha] + eta reaction with the alpha remaining a spectator. The eta meson interacts with 7Be via multiple scatterings on the 3He and alpha clusters inside 7Be. The individual eta-3He and eta-alpha scatterings are evaluated using few body equations for the eta-3N and eta-4N systems with a coupled channel eta-N interaction as an input. Calculations including four low-lying states of 7Be lead to a double hump structure in the total cross section corresponding to the $L = 1 (J = (1/2)^-, (3/2)^-)$ and $L = 3 (J = (5/2)^-, (7/2)^-)$ angular momentum states. The humps arise due to the off-shell rescattering of the eta meson on the 7Be nucleus in the final state.Comment: New results and references adde