A two-state model for helicase translocation and unwinding of nucleic acids

Helicases are molecular motors that unwind double-stranded nucleic acids (dsNA), such as DNA and RNA). Typically a helicase translocates along one of the NA single strands while unwinding and uses adenosine triphosphate (ATP) hydrolysis as an energy source. Here we model of a helicase motor that can switch between two states, which could represent two different points in the ATP hydrolysis cycle. Our model is an extension of the earlier Betterton-J\"ulicher model of helicases to incorporate switching between two states. The main predictions of the model are the speed of unwinding of the dsNA and fluctuations around the average unwinding velocity. Motivated by a recent claim that the NS3 helicase of Hepatitis C virus follows a flashing ratchet mechanism, we have compared the experimental results for the NS3 helicase with a special limit of our model which corresponds to the flashing ratchet scenario. Our model accounts for one key feature of the experimental data on NS3 helicase. However, contradictory observations in experiments carried out under different conditions limit the ability to compare the model to experiments.Comment: minor modification

Uniformization, Calogero-Moser/Heun duality and Sutherland/bubbling pants

Inspired by the work of Alday, Gaiotto and Tachikawa (AGT), we saw the revival of Poincar{\'{e}}'s uniformization problem and Fuchsian equations obtained thereof. Three distinguished aspects are possessed by Fuchsian equations. First, they are available via imposing a classical Liouville limit on level-two null-vector conditions. Second, they fall into some A_1-type integrable systems. Third, the stress-tensor present there (in terms of the Q-form) manifests itself as a kind of one-dimensional "curve". Thereby, a contact with the recently proposed Nekrasov-Shatashvili limit was soon made on the one hand, whilst the seemingly mysterious derivation of Seiberg-Witten prepotentials from integrable models become resolved on the other hand. Moreover, AGT conjecture can just be regarded as a quantum version of the previous Poincar{\'{e}}'s approach. Equipped with these observations, we examined relations between spheric and toric (classical) conformal blocks via Calogero-Moser/Heun duality. Besides, as Sutherland model is also obtainable from Calogero-Moser by pinching tori at one point, we tried to understand its eigenstates from the viewpoint of toric diagrams with possibly many surface operators (toric branes) inserted. A picture called "bubbling pants" then emerged and reproduced well-known results of the non-critical self-dual c=1 string theory under a "blown-down" limit.Comment: 17 pages, 4 figures; v2: corrections and references added; v3: Section 2.4.1 newly added thanks to JHEP referee advice. That classical four-point spheric conformal blocks reproducing known SW prepotentials is demonstrated via more examples, to appear in JHEP; v4: TexStyle changed onl

Classical conformal blocks from TBA for the elliptic Calogero-Moser system

The so-called Poghossian identities connecting the toric and spherical blocks, the AGT relation on the torus and the Nekrasov-Shatashvili formula for the elliptic Calogero-Moser Yang's (eCMY) functional are used to derive certain expressions for the classical 4-point block on the sphere. The main motivation for this line of research is the longstanding open problem of uniformization of the 4-punctured Riemann sphere, where the 4-point classical block plays a crucial role. It is found that the obtained representation for certain 4-point classical blocks implies the relation between the accessory parameter of the Fuchsian uniformization of the 4-punctured sphere and the eCMY functional. Additionally, a relation between the 4-point classical block and the $N_f=4$, ${\sf SU(2)}$ twisted superpotential is found and further used to re-derive the instanton sector of the Seiberg-Witten prepotential of the $N_f=4$, ${\sf SU(2)}$ supersymmetric gauge theory from the classical block.Comment: 25 pages, no figures, latex+JHEP3, published versio

Symbiotic Bright Solitary Wave Solutions of Coupled Nonlinear Schrodinger Equations

Conventionally, bright solitary wave solutions can be obtained in self-focusing nonlinear Schrodinger equations with attractive self-interaction. However, when self-interaction becomes repulsive, it seems impossible to have bright solitary wave solution. Here we show that there exists symbiotic bright solitary wave solution of coupled nonlinear Schrodinger equations with repulsive self-interaction but strongly attractive interspecies interaction. For such coupled nonlinear Schrodinger equations in two and three dimensional domains, we prove the existence of least energy solutions and study the location and configuration of symbiotic bright solitons. We use Nehari's manifold to construct least energy solutions and derive their asymptotic behaviors by some techniques of singular perturbation problems.Comment: to appear in Nonlinearit

Dual role for DOCK7 in tangential migration of interneuron precursors in the postnatal forebrain

Throughout life, stem cells in the ventricular-subventricular zone generate neuroblasts that migrate via the rostral migratory stream (RMS) to the olfactory bulb, where they differentiate into local interneurons. Although progress has been made toward identifying extracellular factors that guide the migration of these cells, little is known about the intracellular mechanisms that govern the dynamic reshaping of the neuroblasts' morphology required for their migration along the RMS. In this study, we identify DOCK7, a member of the DOCK180-family, as a molecule essential for tangential neuroblast migration in the postnatal mouse forebrain. DOCK7 regulates the migration of these cells by controlling both leading process (LP) extension and somal translocation via distinct pathways. It controls LP stability/growth via a Rac-dependent pathway, likely by modulating microtubule networks while also regulating F-actin remodeling at the cell rear to promote somal translocation via a previously unrecognized myosin phosphatase-RhoA-interacting protein-dependent pathway. The coordinated action of both pathways is required to ensure efficient neuroblast migration along the RMS

Andreev tunnelling in quantum dots: A slave-boson approach

We study a strongly interacting quantum dot connected to a normal and to a superconducting lead. By means of the slave-boson technique we investigate the low temperature regime and discuss electrical transport through the dot. We find that the zero bias anomaly in the current-voltage characteristics which is associated to the occurance of the Kondo resonance in the quantum dot, is enhanced in the presence of superconductivity, due to resonant Andreev scattering.Comment: 4 pages, 1 figur

Threshold J/ψ−J/\psi- production in nucleon-nucleon collisions

We analyze $J/\psi-$ production in nucleon-nucleon collisions near threshold in the framework of a general model independent formalism, which can be applied to any reaction $N+N\to N+N+V^0$, where $V^0=\omega$, $\phi$, or $J/\psi$. Such reactions show large isotopic effects: a large difference for $pp$- and $pn$-collisions, which is due to the different spin structure of the corresponding matrix elements. The analysis of the spin structure and of the polarization observables is based on symmetry properties of the strong interaction. Using existing experimental data on the different decays of $J/\psi-$meson, we suggest a model for $N+N\to N+N+J/\psi$, based on $t-$channel $\eta+\pi$-exchanges. We predict polarization phenomena for the $n+p\to n+p+J/\psi$-reaction and the ratio of cross sections for $np$ and $pp$-collisions. For the processes $\eta(\pi)+N\to N+J/\psi$ we apply two different approaches: vector meson exchange and local four-particle interaction. In both cases we find larger $J/\psi$-production in $np$-collisions, with respect to $pp$-collisions.Comment: 17 pages, 6 figure

Deceptive Jamming Method with Micro-motion Property Against ISAR

Airborne target's micro-motion such as rotation or vibration causes phase modulation, termed as micro-Doppler effect, into radar signals. The feature of micro-motion is one of the most obvious features for radar recognition in mid-course phase. In traditional works, it is assumed that the micro-motion of the scatterer is the same as the ballistic target. However, with the variation of the aspect angle of ISAR, the position of the scatterer changes. In this paper, the movement of a ballistic missile in mid-course is modeled and analyzed. A false target jamming method is proposed by combining the micro-motion modulation and the electromagnetic scattering modulation. Compared with the methods using ideal point models, our method is able to generate a vivid false target with structural information, micro-motion and variation of the scatterer's RCS. The micro-motion effect of the false target is presented through ISAR imaging and time-frequency analysis. The effectiveness and correctness of the algorithm is verified by simulation

Classical and quantum chaos in a circular billiard with a straight cut

We study classical and quantum dynamics of a particle in a circular billiard with a straight cut. This system can be integrable, nonintegrable with soft chaos, or nonintegrable with hard chaos, as we vary the size of the cut. We use a quantum web to show differences in the quantum manifestations of classical chaos for these three different regimes.Comment: LaTeX2e, 8 pages including 3 Postscript figures and 4 GIF figures, submitted to Phys. Rev.