New molecular markers resolve the phylogenetic position of the enigmatic wood-boring weevils Platypodinae (Coleoptera: Curculionidae)

The precise phylogenetic position of the weevil subfamily Platypodinae continues to be one of the more contentious issues in weevil systematics. Morphological features of adult beetles and similar ecological adaptations point towards a close relationship with the wood boring Scolytinae, while some recent molecular studies and larval morphology have indicated a closer relationship to Dryophthorinae. To test these opposing hypotheses, a molecular phylogeny was reconstructed using 5,966 nucleotides from ten gene fragments. Five of these genes are used for the first time to explore beetle phylogeny, i.e. the nuclear protein coding genes PABP1, UBA5, Arr2, TPI, and Iap2, while five markers have been used in earlier studies (28S, COI, CAD, ArgK, and EF-1α). Bayesian, maximum likelihood and parsimony analyses of the combined data strongly support a monophyletic Curculionidae (the advanced weevils with geniculate antennae), where Brachycerinae, Platypodinae, and Dryophthorinae formed the earliest diverging groups. Dryophthorinae and core Platypodinae were sister groups with high support, with the contentious genera Mecopelmus Blackman, 1944 and Coptonotus Chapuis, 1873 placed elsewhere. Other lineages of wood boring weevils such as Scolytinae, Cossoninae, and Conoderinae were part of a derived, but less resolved, clade forming the sister group to Entiminae. Resolution among major curculionid subfamilies was ambiguous, emphasizing the need for large volumes of data to further improve resolution in this most diverse section of the weevil tree.publishedVersio

Environmental DNA monitoring of pelagic fish fauna at the Hywind Scotland floating wind energy installation – A pilot study

Environmental impact assessment and regular environmental monitoring are prerequisites for the construction, operation, and decommissioning of offshore installations such as the Hywind Scotland wind park. Molecular approaches are increasingly being considered as a possible complement or alternative to currently used marine baseline and monitoring methods, both for pelagic and benthic organism studies. The following report is a proof-of-concept study where two molecular methods, metabarcoding and quantitative assays, have been used to characterize the pelagic environment at the Hywind Scotland wind park based on filtered water samples from the installation and a reference area. The purpose of the report is to showcase the use of molecular methodology in future studies of the pelagic ecosystem. Metabarcoding was employed for a community view of a) fish species specifically, using the MiFish primer set, and b) a universal eukaryote dataset based on 18S V1-V2 primers. Quantitative assays were employed for two commercially important pelagic fish species: mackerel and herring.publishedVersio

Arctic Paleoceanography Cruise KH21-234 with R/V Kronprins Haakon

We set sail from Longyearbyen on 30.6.2021 to collect surface sediments, long sediment archives, water and plankton samples. The study area is located north of Svalbard, within the seasonal and permanent sea ice covered Arctic Ocean. We took stations N of Svalbard, near Nordaustlandet, Sophia Basin, Yermak Plateau and on the shelf east of Svalbard. In total, we had 52 stations. We deployed the multicorer at least once at every station and sampled the core tops already onboard. These samples will be included in the Arctic Surface Sediment DNA Database, which we will use to establish new aDNA based sea ice proxies. We recovered gravity cores from 12 stations that can be used to reconstruct the Arctic sea ice history in the Holocene, last glacial and likely also Last Interglacial. We collected ice and water and filtered these for eDNA and biomarkers, and water for tracing the isotope signal of the different water masses in the region (Atlantic Water, Polar Water).publishedVersio

New molecular markers resolve the phylogenetic position of the enigmatic wood-boring weevils Platypodinae (Coleoptera: Curculionidae)

The precise phylogenetic position of the weevil subfamily Platypodinae continues to be one of the more contentious issues in weevil systematics. Morphological features of adult beetles and similar ecological adaptations point towards a close relationship with the wood boring Scolytinae, while some recent molecular studies and larval morphology have indicated a closer relationship to Dryophthorinae. To test these opposing hypotheses, a molecular phylogeny was reconstructed using 5,966 nucleotides from ten gene fragments. Five of these genes are used for the first time to explore beetle phylogeny, i.e. the nuclear protein coding genes PABP1, UBA5, Arr2, TPI, and Iap2, while five markers have been used in earlier studies (28S, COI, CAD, ArgK, and EF-1α). Bayesian, maximum likelihood and parsimony analyses of the combined data strongly support a monophyletic Curculionidae (the advanced weevils with geniculate antennae), where Brachycerinae, Platypodinae, and Dryophthorinae formed the earliest diverging groups. Dryophthorinae and core Platypodinae were sister groups with high support, with the contentious genera Mecopelmus Blackman, 1944 and Coptonotus Chapuis, 1873 placed elsewhere. Other lineages of wood boring weevils such as Scolytinae, Cossoninae, and Conoderinae were part of a derived, but less resolved, clade forming the sister group to Entiminae. Resolution among major curculionid subfamilies was ambiguous, emphasizing the need for large volumes of data to further improve resolution in this most diverse section of the weevil tree

New molecular markers resolve the phylogenetic position of the enigmatic wood-boring weevils Platypodinae (Coleoptera: Curculionidae)

The precise phylogenetic position of the weevil subfamily Platypodinae continues to be one of the more contentious issues in weevil systematics. Morphological features of adult beetles and similar ecological adaptations point towards a close relationship with the wood boring Scolytinae, while some recent molecular studies and larval morphology have indicated a closer relationship to Dryophthorinae. To test these opposing hypotheses, a molecular phylogeny was reconstructed using 5,966 nucleotides from ten gene fragments. Five of these genes are used for the first time to explore beetle phylogeny, i.e. the nuclear protein coding genes PABP1, UBA5, Arr2, TPI, and Iap2, while five markers have been used in earlier studies (28S, COI, CAD, ArgK, and EF-1α). Bayesian, maximum likelihood and parsimony analyses of the combined data strongly support a monophyletic Curculionidae (the advanced weevils with geniculate antennae), where Brachycerinae, Platypodinae, and Dryophthorinae formed the earliest diverging groups. Dryophthorinae and core Platypodinae were sister groups with high support, with the contentious genera Mecopelmus Blackman, 1944 and Coptonotus Chapuis, 1873 placed elsewhere. Other lineages of wood boring weevils such as Scolytinae, Cossoninae, and Conoderinae were part of a derived, but less resolved, clade forming the sister group to Entiminae. Resolution among major curculionid subfamilies was ambiguous, emphasizing the need for large volumes of data to further improve resolution in this most diverse section of the weevil tree

Genomic Mining of Phylogenetically Informative Nuclear Markers in Bark and Ambrosia Beetles

<div><p>Deep level insect relationships are generally difficult to resolve, especially within taxa of the most diverse and species rich holometabolous orders. In beetles, the major diversity occurs in the Phytophaga, including charismatic groups such as leaf beetles, longhorn beetles and weevils. Bark and ambrosia beetles are wood boring weevils that contribute 12 percent of the diversity encountered in Curculionidae, one of the largest families of beetles with more than 50000 described species. Phylogenetic resolution in groups of Cretaceous age has proven particularly difficult and requires large quantity of data. In this study, we investigated 100 nuclear genes in order to select a number of markers with low evolutionary rates and high phylogenetic signal. A PCR screening using degenerate primers was applied to 26 different weevil species. We obtained sequences from 57 of the 100 targeted genes. Sequences from each nuclear marker were aligned and examined for detecting multiple copies, pseudogenes and introns. Phylogenetic informativeness (PI) and the capacity for reconstruction of previously established phylogenetic relationships were used as proxies for selecting a subset of the 57 amplified genes. Finally, we selected 16 markers suitable for large-scale phylogenetics of Scolytinae and related weevil taxa.</p></div

Schematic tree showing well supported relationships between tribes within the subfamily Scolytinae and other weevil families and subfamilies considered in this study.

<p>Schematic tree showing well supported relationships between tribes within the subfamily Scolytinae and other weevil families and subfamilies considered in this study.</p

Phylogenetic trees resulting from Bayesian analyses of 8 excluded gene fragments.

<p>Phylogenetic trees resulting from Bayesian analyses of 8 excluded gene fragments.</p

Weevil species included in this study.

<p>Weevil species included in this study.</p

Phylogenetic trees based on Bayesian analyses of 16 selected genes.

<p>Trees were rooted with the most distant outgroup available for each marker. Posterior probabilities are given to the left of the nodes. Sequences of <i>D</i>. <i>ponderosae</i> (ToDen00) were obtained from GenBank.</p