Source Mechanism of Small Long-Period Events at Mount St. Helens in July 2005 Using Template Matching, Phase-Weighted Stacking, and Full-Waveform Inversion

Long-period (LP, 0.5-5 Hz) seismicity, observed at volcanoes worldwide, is a recognized signature of unrest and eruption. Cyclic LP “drumbeating” was the characteristic seismicity accompanying the sustained dome-building phase of the 2004–2008 eruption of Mount St. Helens (MSH), WA. However, together with the LP drumbeating was a near-continuous, randomly occurring series of tiny LP seismic events (LP “subevents”), which may hold important additional information on the mechanism of seismogenesis at restless volcanoes. We employ template matching, phase-weighted stacking, and full-waveform inversion to image the source mechanism of one multiplet of these LP subevents at MSH in July 2005. The signal-to-noise ratios of the individual events are too low to produce reliable waveform inversion results, but the events are repetitive and can be stacked. We apply network-based template matching to 8 days of continuous velocity waveform data from 29 June to 7 July 2005 using a master event to detect 822 network triggers. We stack waveforms for 359 high-quality triggers at each station and component, using a combination of linear and phase-weighted stacking to produce clean stacks for use in waveform inversion. The derived source mechanism points to the volumetric oscillation (∼10 m3) of a subhorizontal crack located at shallow depth (∼30 m) in an area to the south of Crater Glacier in the southern portion of the breached MSH crater. A possible excitation mechanism is the sudden condensation of metastable steam from a shallow pressurized hydrothermal system as it encounters cool meteoric water in the outer parts of the edifice, perhaps supplied from snow melt

Measuring the mass of the central black hole in the bulgeless galaxy ngc 4395 from gas dynamical modeling

NGC 4395 is a bulgeless spiral galaxy, harboring one of the nearest known type 1 Seyfert nuclei. Although there is no consensus on the mass of its central engine, several estimates suggest it is one of the lightest massive black holes (MBHs) known. We present the first direct dynamical measurement of the mass of this MBH from a combination of two-dimensional gas kinematic data, obtained with the adaptive optics assisted near-infrared integral field spectrograph Gemini/NIFS and high-resolution multiband photometric data from Hubble Space Telescope's Wide Field Camera 3. We use the photometric data to model the shape and stellar mass-to-light ratio of the nuclear star cluster (NSC). From the Gemini/NIFS observations, we derive the kinematics of warm molecular hydrogen gas as traced by emission through the H2 1–0 S(1) transition. These kinematics show a clear rotational signal, with a position angle orthogonal to NGC 4395's radio jet. Our best-fitting tilted ring models of the kinematics of the molecular hydrogen gas contain a black hole with mass M={4}-3+8× {10}5 M⊙ (3σ uncertainties) embedded in an NSC of mass M=2× {10}6 M⊙. Our black hole mass measurement is in excellent agreement with the reverberation mapping mass estimate of Peterson et al. but shows some tension with other mass measurement methods based on accretion signals

Earthquake Triggering at Alaskan Volcanoes Following the 3 November 2002 Denali Fault Earthquake

The 3 November 2002 MW 7.9 Denali fault earthquake provided an excellent opportunity to investigate triggered earthquakes at Alaskan volcanoes. The Alaska Volcano Observatory operates short-period seismic networks on 24 historically active volcanoes in Alaska, 247–2159 km distant from the mainshock epicenter. We searched for evidence of triggered seismicity by examining the unfiltered waveforms for all stations in each volcano network for ~1 hr after the MW 7.9 arrival time at each network and for significant increases in located earthquakes in the hours after the mainshock. We found compelling evidence for triggering only at the Katmai volcanic cluster (KVC, 720–755 km southwest of the epicenter), where small earthquakes with distinct P and S arrivals appeared within the mainshock coda at one station and a small increase in located earthquakes occurred for several hours after the mainshock. Peak dynamic stresses of ~0.1 MPa at Augustine Volcano (560 km southwest of the epicenter) are significantly lower than those recorded in Yellowstone and Utah (3000 km southeast of the epicenter), suggesting that strong directivity effects were at least partly responsible for the lack of triggering at Alaskan volcanoes. We describe other incidents of earthquake-induced triggering in the KVC, and outline a qualitative magnitude/distance-dependent triggering threshold. We argue that triggering results from the perturbation of magmatic-hydrothermal systems in the KVC and suggest that the comparative lack of triggering at other Alaskan volcanoes could be a result of differences in the nature of magmatic-hydrothermal systems

Emission and Absorption Properties of Low-Mass Type 2 Active Galaxies with XMM-Newton

We present XMM-Newton observations of four low-redshift Seyfert galaxies selected to have low host luminosities (M_g>-20 mag) and small stellar velocity dispersions (sigma_star<45 km/s), which are among the smallest stellar velocity dispersions found in any active galaxies. These galaxies show weak or no broad optical emission lines and have likely black hole masses <10^6 M_sun. Three out of four objects were detected with >3sigma significance in ~25 ks exposures and two observations had high enough signal-to-noise ratios for rudimentary spectral analysis. We calculate hardness ratios (-0.43 to 0.01) for the three detected objects and use them to estimate photon indices in the range of Gamma=1.1-1.8. Relative to [OIII], the type 2 objects are X-ray faint in comparison with Seyfert 1 galaxies, suggesting that the central engines are obscured. We estimate the intrinsic absorption of each object under the assumption that the [OIII] emission line luminosities are correlated with the unabsorbed X-ray luminosity. The results are consistent with moderate (N_H~10^22 cm^-2) absorption over the Galactic values in three of the four objects, which might explain the non-detection of broad-line emission in optical spectra. One object in our sample, SDSS J110912.40+612346.7, is a near identical type 2 counterpart of the late-type Seyfert 1 galaxy NGC 4395. While the two objects have very similar [OIII] luminosities, the type 2 object has an X-ray/[OIII] flux ratio nearly an order of magnitude lower than NGC 4395. The most plausible explanation for this difference is absorption of the primary X-ray continuum of the type 2 object, providing an indication that obscuration-based unified models of active galaxies can apply even at the lowest luminosities seen among Seyfert nuclei, down to L_bol~10^40-10^41 erg/s.Comment: 5 figures, 3 tables, accepted for publication in Ap

Low-Mass Seyfert 2 Galaxies in the Sloan Digital Sky Survey

(Abridged) We describe a sample of low-mass Seyfert 2 galaxies selected from the Sloan Digital Sky Survey, having a median absolute magnitude of M_g = -19.0 mag. These galaxies are Type 2 counterparts to the Seyfert 1 galaxies with intermediate-mass black holes identified by Greene & Ho (2004). Spectra obtained with the Echellette Spectrograph and Imager at the Keck Observatory are used to determine the central stellar velocity dispersions and to examine the emission-line properties. Overall, the stellar velocity dispersions are low (40-90 km/s), and we find 12 objects having sigma < 60 km/s, a range where very few Seyfert 2 galaxies were previously known. The sample follows the correlation between stellar velocity dispersion and FWHM([OIII]) seen in more massive Seyfert galaxies, indicating that the narrow-line FWHM values are largely determined by virial motion of gas in the central regions of the host galaxies. Using estimates of the black hole masses and AGN bolometric luminosities, we find that these galaxies are typically radiating at a high fraction of their Eddington rate, with a median L_bol/L_Edd = 0.4. We identify one galaxy, SDSS J110912.40+612346.7, as a Type 2 analog of the nearby dwarf Seyfert 1 galaxy NGC 4395, with a nearly identical narrow-line spectrum and a dwarf spiral host of only M_g = -16.8 mag. Forthcoming observations of this sample, including X-ray and mid-infrared spectroscopy, can provide new tests of the obscuring torus model for active galaxies at low luminosities.Comment: 34 pages, 16 figures. Some figures bitmapped to reduce size. To appear in A

Mutations causing medullary cystic kidney disease type 1 (MCKD1) lie in a large VNTR in MUC1 missed by massively parallel sequencing

While genetic lesions responsible for some Mendelian disorders can be rapidly discovered through massively parallel sequencing (MPS) of whole genomes or exomes, not all diseases readily yield to such efforts. We describe the illustrative case of the simple Mendelian disorder medullary cystic kidney disease type 1 (MCKD1), mapped more than a decade ago to a 2-Mb region on chromosome 1. Ultimately, only by cloning, capillary sequencing, and de novo assembly, we found that each of six MCKD1 families harbors an equivalent, but apparently independently arising, mutation in sequence dramatically underrepresented in MPS data: the insertion of a single C in one copy (but a different copy in each family) of the repeat unit comprising the extremely long (~1.5-5 kb), GC-rich (>80%), coding VNTR in the mucin 1 gene. The results provide a cautionary tale about the challenges in identifying genes responsible for Mendelian, let alone more complex, disorders through MPS

Mutations causing medullary cystic kidney disease type 1 (MCKD1) lie in a large VNTR in MUC1 missed by massively parallel sequencing

While genetic lesions responsible for some Mendelian disorders can be rapidly discovered through massively parallel sequencing (MPS) of whole genomes or exomes, not all diseases readily yield to such efforts. We describe the illustrative case of the simple Mendelian disorder medullary cystic kidney disease type 1 (MCKD1), mapped more than a decade ago to a 2-Mb region on chromosome 1. Ultimately, only by cloning, capillary sequencing, and de novo assembly, we found that each of six MCKD1 families harbors an equivalent, but apparently independently arising, mutation in sequence dramatically underrepresented in MPS data: the insertion of a single C in one copy (but a different copy in each family) of the repeat unit comprising the extremely long (~1.5-5 kb), GC-rich (>80%), coding VNTR in the mucin 1 gene. The results provide a cautionary tale about the challenges in identifying genes responsible for Mendelian, let alone more complex, disorders through MPS

Pan-cancer Alterations of the MYC Oncogene and Its Proximal Network across the Cancer Genome Atlas

Although theMYConcogene has been implicated incancer, a systematic assessment of alterations ofMYC, related transcription factors, and co-regulatoryproteins, forming the proximal MYC network (PMN),across human cancers is lacking. Using computa-tional approaches, we define genomic and proteo-mic features associated with MYC and the PMNacross the 33 cancers of The Cancer Genome Atlas.Pan-cancer, 28% of all samples had at least one ofthe MYC paralogs amplified. In contrast, the MYCantagonists MGA and MNT were the most frequentlymutated or deleted members, proposing a roleas tumor suppressors.MYCalterations were mutu-ally exclusive withPIK3CA,PTEN,APC,orBRAFalterations, suggesting that MYC is a distinct onco-genic driver. Expression analysis revealed MYC-associated pathways in tumor subtypes, such asimmune response and growth factor signaling; chro-matin, translation, and DNA replication/repair wereconserved pan-cancer. This analysis reveals insightsinto MYC biology and is a reference for biomarkersand therapeutics for cancers with alterations ofMYC or the PMN

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context

Long noncoding RNAs (lncRNAs) are commonly dys-regulated in tumors, but only a handful are known toplay pathophysiological roles in cancer. We inferredlncRNAs that dysregulate cancer pathways, onco-genes, and tumor suppressors (cancer genes) bymodeling their effects on the activity of transcriptionfactors, RNA-binding proteins, and microRNAs in5,185 TCGA tumors and 1,019 ENCODE assays.Our predictions included hundreds of candidateonco- and tumor-suppressor lncRNAs (cancerlncRNAs) whose somatic alterations account for thedysregulation of dozens of cancer genes and path-ways in each of 14 tumor contexts. To demonstrateproof of concept, we showed that perturbations tar-geting OIP5-AS1 (an inferred tumor suppressor) andTUG1 and WT1-AS (inferred onco-lncRNAs) dysre-gulated cancer genes and altered proliferation ofbreast and gynecologic cancer cells. Our analysis in-dicates that, although most lncRNAs are dysregu-lated in a tumor-specific manner, some, includingOIP5-AS1, TUG1, NEAT1, MEG3, and TSIX, synergis-tically dysregulate cancer pathways in multiple tumorcontexts

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas

This integrated, multiplatform PanCancer Atlas study co-mapped and identified distinguishing molecular features of squamous cell carcinomas (SCCs) from five sites associated with smokin