Scallop dredging has profound, long-term impacts on maerl habitats

Maerl beds are mixed sediments built by a surface layer of slow-growing, unattached coralline algae that are of international conservation significance because they create areas of high biodiversity. They are patchily distributed throughout Europe (to ∼ 30 m depth around the British Isles and to ∼ 120 m depth in the Mediterranean) and many are affected by towed demersal fishing. We report the effects of Newhaven scallop dredges on a previously unfished maerl bed compared with the effects on similar grounds that have been fished commercially in the Clyde Sea area, Scotland. Sediment cores were taken to assess the population density of live maerl thalli prior to scallop dredging on marked test and control plots. These plots were then monitored biannually over a four-year period. Live maerl thalli were sparsely distributed at the impacted site, and experimental dredging had no discernible effect on their numbers. The previously unfished ground had dense populations of live maerl and scallops (both Aequipecten opercularis and Pecten maximus). While counts of live maerl remained high on the control plot, scallop dredging led to a >70% reduction with no sign of recovery over the subsequent four years. The vulnerability of maerl and associated benthos (e.g., the delicate bivalve, Limaria hians) is discussed in relation to towed demersal fishing practices. © 2000 International Council for the Exploration of the Sea

Observations and possible function of the striking anterior coloration pattern of Galathea intermedia (Crustacea: Decapoda: Anomura)

Galathea intermedia is common, but cryptic, on Clyde maerl deposits where it lives in small groups of mixed sex and age, sharing shelters (typically dead Dosinia shells) to avoid predation. Its appearance is marked by six iridescent blue spots which may play an important role in intra- or interspecific interactions

The impact of Rapido trawling for scallops, Pecten jacobaeus (L.), on the benthos of the Gulf of Venice

Rapido trawls are used to catch sole around the coast of Italy and to catch scallops in the northern Adriatic Sea but little is known about the environmental impact of this gear. Benthic surveys of a commercial scallop ground using a towed underwater television (UWTV) sledge revealed an expansive area of level, sandy sediment at 25 m characterized by high population densities of scallops (2.82 m-2 Aequipecten opercularis but fewer Pecten jacobaeus) together with ophiuroids, sponges, and the bivalve Atrina fragilis. Rapido trawls were filmed in action for the first time, providing information on the selectivity and efficiency of the gear together with its impact on the substratum and on the benthos. The trawls worked efficiently on smooth sand with ca. 44% catch rate for Pecten jacobaeus, of which 90% were >7 cm in shell height. Most organisms in the path of the trawl passed under or through the net; on average by-catch species only formed 19% of total catch by weight. Of the 78 taxa caught, lethal mechanical damage varied from 50% in soft-bodied organisms such as tunicates. A marked plot surveyed using towed UWTV before, then 1 and 15 h after fishing by Rapido trawl showed clear tracks of disturbed sediment along the trawl path where infaunal burrow openings had been erased. Abundant, motile organisms such as Aequipecten showed no change in abundance along these tracks although scavengers such as Inachus aggregated to feed on damaged organisms. There were significant decreases in the abundance of slow-moving/sessile benthos such as Pecten, Holothuria, and Atrina. Juvenile pectinids were abundant on the shells of Atrina. The introduction of a scheme of areas closed to trawling would protect highly susceptible organisms such as Atrina and enhance the chances of scallop recruitment to adjacent areas of commercial exploitation

Genetic diversity of Mycobacterium tuberculosis in Peru and exploration of phylogenetic associations with drug resistance.

BACKGROUND: There is limited available data on the strain diversity of M tuberculosis in Peru, though there may be interesting lessons to learn from a setting where multidrug resistant TB has emerged as a major problem despite an apparently well-functioning DOTS control programme. METHODS: Spoligotyping was undertaken on 794 strains of M tuberculosis collected between 1999 and 2005 from 553 community-based patients and 241 hospital-based HIV co-infected patients with pulmonary tuberculosis in Lima, Peru. Phylogenetic and epidemiologic analyses permitted identification of clusters and exploration of spoligotype associations with drug resistance. RESULTS: Mean patient age was 31.9 years, 63% were male and 30.4% were known to be HIV+. Rifampicin mono-resistance, isoniazid mono-resistance and multidrug resistance (MDR) were identified in 4.7%, 8.7% and 17.3% of strains respectively. Of 794 strains from 794 patients there were 149 different spoligotypes. Of these there were 27 strains (3.4%) with novel, unique orphan spoligotypes. 498 strains (62.7%) were clustered in the nine most common spoligotypes: 16.4% SIT 50 (clade H3), 12.3% SIT 53 (clade T1), 8.3% SIT 33 (LAM3), 7.4% SIT 42 (LAM9), 5.5% SIT 1 (Beijing), 3.9% SIT 47 (H1), 3.0% SIT 222 (clade unknown), 3.0% SIT1355 (LAM), and 2.8% SIT 92 (X3). Amongst HIV-negative community-based TB patients no associations were seen between drug resistance and specific spoligotypes; in contrast HIV-associated MDRTB, but not isoniazid or rifampicin mono-resistance, was associated with SIT42 and SIT53 strains. CONCLUSION: Two spoligotypes were associated with MDR particularly amongst patients with HIV. The MDR-HIV association was significantly reduced after controlling for SIT42 and SIT53 status; residual confounding may explain the remaining apparent association. These data are suggestive of a prolonged, clonal, hospital-based outbreak of MDR disease amongst HIV patients but do not support a hypothesis of strain-specific propensity for the acquisition of resistance-conferring mutations

Blueswitch: Enabling provably consistent configuration of network switches

Previous research on consistent updates for distributed network configurations has focused on solutions for centralized networkconfiguration controllers. However, such work does not address the complexity of modern switch datapaths. Modern commodity switches expose opaque configuration mechanisms, with minimal guarantees for datapath consistency and with unclear configuration semantics. Furthermore, would-be solutions for distributed consistent updates must take into account the configuration guarantees provided by each individual switch – plus the compositional problems of distributed control and multi-switch configurations that considerably transcend the single-switch problems. In this paper, we focus on the behavior of individual switches, and demonstrate that even simple rule updates result in inconsistent packet switching in multi-table datapaths. We demonstrate that consistent configuration updates require guarantees of strong switch-level atomicity from both hardware and software layers of switches – even in a single switch. In short, the multiple-switch problems cannot be reasonably approached until single-switch consistency can be resolved. We present a hardware design that supports a transactional configuration mechanism, and provides packet-consistent configuration: all packets traversing the datapath will encounter either the old configuration or the new one, and never an inconsistent mix of the two. Unlike previous work, our design does not require modifications to network packets. We precisely specify the hardwaresoftware protocol for switch configuration; this enables us to prove the correctness of the design, and to provide well-specified invariants that the software driver must maintain for correctness. We implement our prototype switch design using the NetFPGA-10G hardware platform, and evaluate our prototype against commercial off-the-shelf switches.This work was jointly supported by the Defense Advanced Research Projects Agency (DARPA) and the Air Force Research Laboratory (AFRL), under contract FA8750-11-C-0249. The views, opinions, and/or findings contained in this article/presentation are those of the author/ presenter and should not be interpreted as representing the official views or policies, either expressed or implied, of the Department of Defense or the U.S. Government. We also acknowledge the support of the UK EPSRC for contributing to parts of our work, through grant EP/H040536/1. Additional data related to this publication is available at the http://www.cl.cam.ac. uk/research/srg/netfpga/blueswitch/ data repository.This is the author accepted manuscript. The final version is available from IEEE via http://dx.doi.org/10.1109/ANCS.2015.711011

Balancing Disruption and Deployability in the CHERI Instruction-Set Architecture (ISA)

For over two-and-a-half decades, dating to the first widespread commercial deployment of the Internet, commodity processor architectures have failed to provide robust and secure foundations for communication and commerce. This is in large part due to the omission of architectural features allowing efficient implementation of the Principle of Least Privilege, which dictates that software runs only with the rights it requires to operate [19, 20]. Without this support, the impact of inevitable vulnerabilities is multiplied as successful attackers gain easy access to unnecessary rights – and often, all rights – in software systems

Rationing tests for drug-resistant tuberculosis - who are we prepared to miss?

BACKGROUND: Early identification of patients with drug-resistant tuberculosis (DR-TB) increases the likelihood of treatment success and interrupts transmission. Resource-constrained settings use risk profiling to ration the use of drug susceptibility testing (DST). Nevertheless, no studies have yet quantified how many patients with DR-TB this strategy will miss. METHODS: A total of 1,545 subjects, who presented to Lima health centres with possible TB symptoms, completed a clinic-epidemiological questionnaire and provided sputum samples for TB culture and DST. The proportion of drug resistance in this population was calculated and the data was analysed to demonstrate the effect of rationing tests to patients with multidrug-resistant TB (MDR-TB) risk factors on the number of tests needed and corresponding proportion of missed patients with DR-TB. RESULTS: Overall, 147/1,545 (9.5%) subjects had culture-positive TB, of which 32 (21.8%) had DR-TB (MDR, 13.6%; isoniazid mono-resistant, 7.5%; rifampicin mono-resistant, 0.7%). A total of 553 subjects (35.8%) reported one or more MDR-TB risk factors; of these, 506 (91.5%; 95% CI, 88.9-93.7%) did not have TB, 32/553 (5.8%; 95% CI, 3.4-8.1%) had drug-susceptible TB, and only 15/553 (2.7%; 95% CI, 1.5-4.4%) had DR-TB. Rationing DST to those with an MDR-TB risk factor would have missed more than half of the DR-TB population (17/32, 53.2%; 95% CI, 34.7-70.9). CONCLUSIONS: Rationing DST based on known MDR-TB risk factors misses an unacceptable proportion of patients with drug-resistance in settings with ongoing DR-TB transmission. Investment in diagnostic services to allow universal DST for people with presumptive TB should be a high priority

Evolving Robots on Easy Mode: Towards a Variable Complexity Controller for Quadrupeds

The complexity of a legged robot's environment or task can inform how specialised its gait must be to ensure success. Evolving specialised robotic gaits demands many evaluations - acceptable for computer simulations, but not for physical robots. For some tasks, a more general gait, with lower optimization costs, could be satisfactory. In this paper, we introduce a new type of gait controller where complexity can be set by a single parameter, using a dynamic genotype-phenotype mapping. Low controller complexity leads to conservative gaits, while higher complexity allows more sophistication and high performance for demanding tasks, at the cost of optimization effort. We investigate the new controller on a virtual robot in simulations and do preliminary testing on a real-world robot. We show that having variable complexity allows us to adapt to different optimization budgets. With a high evaluation budget in simulation, a complex controller performs best. Moreover, real-world evolution with a limited evaluation budget indicates that a lower gait complexity is preferable for a relatively simple environment.Comment: Accepted to EvoApplications1