The importance of phenotypic plasticity and local adaptation in driving intraspecific variability in thermal niches of marine macrophytes

Climate change is driving the redistribution of species at a global scale and documenting and predicting species' responses to warming is a principal focus of contemporary ecology. When interpreting and predicting their responses to warming, species are generally treated as single homogenous physiological units. However, local adaptation and phenotypic plasticity can result in intraspecific differences in thermal niche. Therefore, population loss may also not only occur from trailing edges. In species with low dispersal capacity this will have profound impacts for the species as a whole, as local population loss will not be offset by immigration of warm tolerant individuals. Recent evidence from terrestrial forests has shown that incorporation of intraspecific variation in thermal niche is vital to accurately predicting species responses to warming. However, marine macrophytes (i.e. seagrasses and seaweeds) that form some of the world's most productive and diverse ecosystems have not been examined in the same context. We conducted a literature review to determine how common intraspecific variation in thermal physiology is in marine macrophytes. We find that 90% of studies identified (n = 42) found clear differences in thermal niche between geographically separated populations. Therefore, non-trailing edge populations may also be vulnerable to future warming trends and given their limited dispersal capacity, such population loss may not be offset by immigration. We also explore how next generation sequencing (NGS) is allowing unprecedented mechanistic insight into plasticity and adaptation. We conclude that in the ‘genomic era’ it may be possible to link understanding of plasticity and adaptation at the genetic level through to changes in populations providing novel insights on the redistribution of populations under future climate change

Conversion of Legal Agreements into Smart Legal Contracts using NLP

A Smart Legal Contract (SLC) is a specialized digital agreement comprising natural language and computable components. The Accord Project provides an open-source SLC framework containing three main modules: Cicero, Concerto, and Ergo. Currently, we need lawyers, programmers, and clients to work together with great effort to create a usable SLC using the Accord Project. This paper proposes a pipeline to automate the SLC creation process with several Natural Language Processing (NLP) models to convert law contracts to the Accord Project's Concerto model. After evaluating the proposed pipeline, we discovered that our NER pipeline accurately detects CiceroMark from Accord Project template text with an accuracy of 0.8. Additionally, our Question Answering method can extract one-third of the Concerto variables from the template text. We also delve into some limitations and possible future research for the proposed pipeline. Finally, we describe a web interface enabling users to build SLCs. This interface leverages the proposed pipeline to convert text documents to Smart Legal Contracts by using NLP models.Comment: 7 pages, Companion Proceedings of the ACM Web Conference 2023 (WWW '23 Companion), April 30-May 4, 2023, Austin, TX, US

Modeling petroleum expulsion in sedimentary basins : The importance of igneous intrusion timing and basement composition

We thank Siccar Point Energy Ltd. for permission to publish this study. Thanks also to Robert Holdsworth, Simon Holford and Christian Huag Eide for their insightful feedback which has greatly improved the manuscript. 1GSA Data Repository item 2019328, supplementary data (geochemical summary, rationale and data tables), is available online at http://www.geosociety.org/datarepository/2019/, or on request from [email protected] reviewedPublisher PD

Evidence for different thermal ecotypes in range centre and trailing edge kelp populations

Determining and predicting species’ responses to climate change is a fundamental goal of contemporary ecology. When interpreting responses to warming species are often treated as a single physiological unit with a single species-wide thermal niche. This assumes that trailing edge populations are most vulnerable to warming, as it is here where a species’ thermal niche will be exceeded first. Local adaptation can, however, result in narrower thermal tolerance limits for local populations, so that similar relative increases in temperature can exceed local niches throughout a species range. We used a combination of common garden temperature heat-shock experiments (8–32 °C) and population genetics (microsatellites) to identify thermal ecotypes of northeast Atlantic range centre and trailing edge populations of the habitat-forming kelp, Laminaria digitata. Using upregulation of hsp70 as an indicator of thermal stress, we found that trailing edge populations were better equipped to tolerate acute temperature shocks. This pattern was consistent across seasons, indicating that between-population variability is fixed. High genetic structuring was also observed, with range centre and trailing edge populations representing highly distinct clusters with little gene flow between regions. Taken together, this suggests the presence of distinct thermal ecotypes for L. digitata, which may mean responses to future warming are more complex than linear range contractions. © 2019 Elsevier B.V

Structural modification of the Pseudomonas aeruginosa alkylquinoline cell–cell communication signal, HHQ, leads to benzofuranoquinolines with anti-virulence behaviour in ESKAPE pathogens

Microbial populations have evolved intricate networks of negotiation and communication through which they can coexist in natural and host ecosystems. The nature of these systems can be complex and they are, for the most part, poorly understood at the polymicrobial level. The Pseudomonas Quinolone Signal (PQS) and its precursor 4- hydroxy- 2-heptylquinoline (HHQ) are signal molecules produced by the important nosocomial pathogen Pseudomonas aeruginosa. They are known to modulate the behaviour of co-colonizing bacterial and fungal pathogens such as Bacillus atropheaus, Candida albicans and Aspergillus fumigatus. While the structural basis for alkyl-quinolone signalling within P. aeruginosa has been studied extensively, less is known about how structural derivatives of these molecules can influ-ence multicellular behaviour and population- level decision-making in other co-colonizing organisms. In this study, we investigated a suite of small molecules derived initially from the HHQ framework, for anti-virulence activity against ESKAPE pathogens, at the species and strain levels. Somewhat surprisingly, with appropriate substitution, loss of the alkyl chain (present in HHQ and PQS) did not result in a loss of activity, presenting a more easily accessible synthetic framework for investigation. Virulence profiling uncovered significant levels of inter-strain variation among the responses of clinical and environmental isolates to small-molecule challenge. While several lead compounds were identified in this study, further work is needed to appreciate the extent of strain- level tolerance to small-molecule anti-infectives among pathogenic organisms.National Forum for the Enhancement of Teaching and Learning in Higher Education SFI/12/IP/1315, US Cystic Fibrosis Foundation SFI/12/RC/2275, National Health and Medical Research Council (NHMRC) of Australia SFI/12/RC/2275_P2, UCC Strategic Research Fund and Science Foundation Ireland (SFI) SSPC-3 12/RC/2275_2, Synthesis and Solid State Pharmaceutical Centre (SSPC) HRB-ILP-POR-2019-004, MRCG-2018-16, Universidade do Algarve TL19UCC1481/02, OGARA1710, APP1183640 2020-5,info:eu-repo/semantics/publishedVersio

Overnight staffing in Canadian neonatal and pediatric intensive care units

AimInfants and children who require specialized medical attention are admitted to neonatal and pediatric intensive care units (ICUs) for continuous and closely supervised care. Overnight in-house physician coverage is frequently considered the ideal staffing model. It remains unclear how often this is achieved in both pediatric and neonatal ICUs in Canada. The aim of this study is to describe overnight in-house physician staffing in Canadian pediatric and level-3 neonatal ICUs (NICUs) in the pre-COVID-19 era.MethodsA national cross-sectional survey was conducted in 34 NICUs and 19 pediatric ICUs (PICUs). ICU directors or their delegates completed a 29-question survey describing overnight staffing by resident physicians, fellow physicians, nurse practitioners, and attending physicians. A comparative analysis was conducted between ICUs with and without in-house physicians.ResultsWe obtained responses from all 34 NICUs and 19 PICUs included in this study. A total of 44 ICUs (83%) with in-house overnight physician coverage provided advanced technologies, such as extracorporeal life support, and included all ICUs that catered to patients with cardiac, transplant, or trauma conditions. Residents provided the majority of overnight coverage, followed by the Critical Care Medicine fellows. An attending physician was in-house overnight in eight (15%) out of the 53 ICUs, seven of which were NICUs. Residents participating in rotations in the ICU would often have rotation durations of less than 6 weeks and were often responsible for providing care during shifts lasting 20–24 h.ConclusionMost PICUs and level-3 NICUs in Canada have a dedicated in-house physician overnight. These physicians are mainly residents or fellows, but a notable variation exists in this arrangement. The potential effects on patient outcomes, resident learning, and physician satisfaction remain unclear and warrant further investigation

Individual and population-level responses to ocean acidification

Ocean acidification is predicted to have detrimental effects on many marine organisms and ecological processes. Despite growing evidence for direct impacts on specific species, few studies have simultaneously considered the effects of ocean acidification on individuals (e.g. consequences for energy budgets and resource partitioning) and population level demographic processes. Here we show that ocean acidification increases energetic demands on gastropods resulting in altered energy allocation, i.e. reduced shell size but increased body mass. When scaled up to the population level, long-term exposure to ocean acidification altered population demography, with evidence of a reduction in the proportion of females in the population and genetic signatures of increased variance in reproductive success among individuals. Such increased variance enhances levels of short-term genetic drift which is predicted to inhibit adaptation. Our study indicates that even against a background of high gene flow, ocean acidification is driving individual- and population-level changes that will impact eco-evolutionary trajectories

Increasing Internodal Distance in Myelinated Nerves Accelerates Nerve Conduction to a Flat Maximum

SummaryPredictions that conduction velocities are sensitive to the distance between nodes of Ranvier in myelinated axons have implications for nervous system function during growth and repair [1–3]. Internodal lengths defined by Schwann cells in hindlimb nerves, for example, can undergo a 4-fold increase during mouse development, and regenerated nerves have internodes that are uniformly short [4, 5]. Nevertheless, the influence of internodal length on conduction speed has limited experimental support. Here, we examined this problem in mice expressing a mutant version of periaxin, a protein required for Schwann cell elongation [4]. Importantly, elongation of mutant Schwann cells was retarded without significant derangements to myelination or axon caliber. In young mice with short mutant Schwann cells, nerve conduction velocity was reduced and motor function was impaired. This demonstrates a functional relationship between internodal distance and conduction speed. Moreover, as internodes lengthened during postnatal growth, conduction velocities recovered to normal values and mutant mice exhibited normal motor and sensory behavior. This restoration of function confirms a further prediction by Huxley and Stämpfli that conduction speeds should increase as internodal distances lengthen until a “flat maximum” is reached, beyond which no further gains in conduction velocity accrue [6]

ARES(2014)2425342 - 22/07/2014. Organisation and running of a scientific workshop to complete selected invasive alien species (IAS) risk assessments

The introduction and spread of invasive alien species (IAS) constitutes one of the most important drivers of global change in biodiversity and ecosystem services. Robust risk assessment methods are required for IAS to provide the foundation upon which to prioritise appropriate action. In a previous study (Roy, Schonrogge et al. 2014) minimum standards were developed to provide an assessment framework for risk assessments and ultimately for underpinning the development of a proposed list of “IAS of EU concern”, in accordance to the provisions of the Regulation (EU) No 1143/2014 of the European Parliament and of the Council of 22 October 2014 on the prevention and management of the introduction and spread of invasive alien species. In practice, of the protocols assessed in detail, only four (GB NNRA, EPPO DSS, Harmonia+ and ENSARS) were sufficiently compliant with the minimum standards to be considered and of these only the GB NNRA and EPPO DSS have published IAS risk assessments. As a result, using the information from such “substantially compliant” protocols, a draft list of approximately 50 species was compiled. It is important to note that this list of species is based on availability of robust risk assessments already completed through methods which are almost compliant with the minimum standards, and it does not constitute the list of “IAS of EU concern”. In view of the application of the forthcoming EU Regulation on IAS (and building-on ENV.B.2/ETU/2013/0026) the Commission hosted a 2-day scientific workshop to examine the selected risk assessments and pool the existing knowledge existing in the EU to complete the missing information, on the basis of robust scientific evidence, in order to make them fully compliant with the minimum standards, wherever possible. The workshop was led by Helen Roy (CEH) and Riccardo Scalera (ISSG). An additional 16 experts from fifteen member states were selected based on their expertise in invasion biology and represented a breadth of expertise from a variety of perspectives including taxonomic (all taxa), environmental (freshwater, marine and terrestrial), impacts (environmental, socio-economic and health) and disciplines (ecologists, conservation practitioners, scientists, policy-makers, risk assessors). In view of the gaps across risk assessments for ecosystem services and climate change two experts were invited to guide the development of approaches for these specific themes. In total the risk assessments for 56 species were considered. The GB NNRA and EPPO DSS have published IAS risk assessments which, when considering species that score medium to high impact, together cover 51 species (noting that Fallopia japonica and F. sachalinensis are separate species). Two further risk assessments were suggested for consideration by the GB Non-Native Species Secretariat which follow the GB NNRA protocol: coati (Nasua nasua) and skunk (Mephitis mephitis), although scored as low impact. Finally an additional three species have been considered through new European–wide risk assessments, with the reported outcome of high impact, for this project which again follow the GB NNRA protocol: Pallas squirrel (Callosciurus erythraeus), grey squirrel (Sciurus carolinensis) and coypu (Myocastor coypus). The main gaps across all risk assessments were in relation to climate change and ecosystem services but additional information was also required on benefits as mentioned with minimum standard “Description (Taxonomy, invasion history, distribution range (native and introduced), geographic scope, socio-economic benefits)” and in some cases information to support the minimum standard “Includes status (threatened or protected) of species or habitat under threat“ was missing. It was agreed that systematic consideration of a list of questions in relation to the minimum standards on ecosystem services and climate change would be useful guidance for experts. An outline of the approaches agreed through the workshop for the minimum standards “Includes possible effects of climate change in the foreseeable future“ and “Can broadly assess environmental impact with respect to ecosystem services” were developed as guidance for documenting information in relation to climate change and ecosystem services. Each species was considered separately with the experts providing an overview of the information available for addressing the identified gaps. After all species had been considered the workshop participants (excluding the EC, Helen Roy and Riccardo Scalera) adopted a consensus approach to confirm whether or not the risk assessment was compliant with the minimum standards and whether the overall score of the risk assessment remained applicable. No changes were made to the scores but any recommendations were noted. There were very few recommendations for change. The outcome for each risk assessment was agreed and summarised as “compliant” or “not compliant” with the minimum standards. Of the risk assessments for the 56 species considered through this project, 53 were agreed to be fully compliant with the minimum standards. However, Pacific oyster, Crassostrea gigas, although compliant with the minimum standards should be excluded as it is not within the scope of the regulation (see art 2.e) because it is listed in annex IV of Council Regulation (EC) No 708/2007 of 11 June 2007 concerning use of alien and locally absent species in aquaculture. Four of the risk assessments were not considered to be compliant because of major information gaps: Elodea canadensis (Canadian pondweed), Heracleum mantegazzianum (giant hogweed), M. mephitis (skunk), N. nasua (coati)

Risk management to prioritise the eradication of new and emerging invasive non-native species

Robust tools are needed to prioritise the management of invasive non-native species (INNS). Risk assessment is commonly used to prioritise INNS, but fails to take into account the feasibility of management. Risk management provides a structured evaluation of management options, but has received little attention to date. We present a risk management scheme to assess the feasibility of eradicating INNS that can be used, in conjunction with existing risk assessment schemes, to support prioritisation. The Non-Native Risk Management scheme (NNRM) can be applied to any predefined area and any taxa. It uses semi-quantitative response and confidence scores to assess seven key criteria: Effectiveness, Practicality, Cost, Impact, Acceptability, Window of opportunity and Likelihood of re-invasion. Scores are elicited using expert judgement, supported by available evidence, and consensus-building methods. We applied the NNRM to forty-one INNS that threaten Great Britain (GB). Thirty-three experts provided scores, with overall feasibility of eradication assessed as ‘very high’ (8 species), ‘high’ (6), ‘medium’ (8), ‘low’ (10) and ‘very low’ (9). The feasibility of eradicating terrestrial species was higher than aquatic species. Lotic freshwater and marine species scored particularly low. Combining risk management and existing risk assessment scores identified six established species as priorities for eradication. A further six species that are not yet established were identified as priorities for eradication on arrival as part of contingency planning. The NNRM is one of the first INNS risk management schemes that can be used with existing risk assessments to prioritise INNS eradication in any area