Development of a Detailed Microphysics Cirrus Model Tracking Aerosol Particles' Histories for Interpretation of the Recent INCA Campaign

International audienceCirrus clouds play an important role in the earth's energy balance. To quantify their impact, information is needed on their microstructure and more precisely on the number and size of the ice crystals. With the anthropogenic activity, more and more aerosol particles and water vapor are released even at the altitude where cirrus clouds are formed. Cirrus clouds formed in a polluted air mass may have different microphysical properties and, therefore, a different impact on the climate system via the changed radiative properties compared to background cirrus clouds. To study this aspect, the European project called the Interhemispheric Differences in Cirrus Properties due to Anthropogenic Emissions (INCA) measured the microphysical properties of cirrus clouds together with the physical and chemicals properties of aerosol particles in clean air (at Punta Arenas, Chile) and polluted air (at Prestwick, Scotland). The goal of the present work was to develop a detailed microphysics model for cirrus clouds for the interpretation and the generalization of the INCA observations. This model considers moist aerosol particles through the Externally Mixed (EXMIX) model, so that the chemical composition of solution droplets can be followed. Ice crystal formation is described through homogeneous or heterogeneous nucleation. The crystals then grow by deposition. With this model, the interactions between the microphysical processes, simulated ice crystal concentrations, and dimensional distributions of the INCA observations were studied, and explanations were provided for the observed differences between background and polluted cirrus clouds

Comparison between elementary flux modes analysis and 13C-metabolic fluxes measured in bacterial and plant cells

<p>Abstract</p> <p>Background</p> <p>¹³C metabolic flux analysis is one of the pertinent ways to compare two or more physiological states. From a more theoretical standpoint, the structural properties of metabolic networks can be analysed to explore feasible metabolic behaviours and to define the boundaries of steady state flux distributions. Elementary flux mode analysis is one of the most efficient methods for performing this analysis. In this context, recent approaches have tended to compare experimental flux measurements with topological network analysis.</p> <p>Results</p> <p>Metabolic networks describing the main pathways of central carbon metabolism were set up for a bacteria species (<it>Corynebacterium glutamicum</it>) and a plant species (<it>Brassica napus</it>) for which experimental flux maps were available. The structural properties of each network were then studied using the concept of elementary flux modes. To do this, coefficients of flux efficiency were calculated for each reaction within the networks by using selected sets of elementary flux modes. Then the relative differences - reflecting the change of substrate <it>i.e</it>. a sugar source for <it>C</it>. <it>glutamicum </it>and a nitrogen source for <it>B</it>. <it>napus </it>- of both flux efficiency and flux measured experimentally were compared. For both organisms, there is a clear relationship between these parameters, thus indicating that the network structure described by the elementary flux modes had captured a significant part of the metabolic activity in both biological systems. In <it>B</it>. <it>napus</it>, the extension of the elementary flux mode analysis to an enlarged metabolic network still resulted in a clear relationship between the change in the coefficients and that of the measured fluxes. Nevertheless, the limitations of the method to fit some particular fluxes are discussed.</p> <p>Conclusion</p> <p>This consistency between EFM analysis and experimental flux measurements, validated on two metabolic systems allows us to conclude that elementary flux mode analysis could be a useful tool to complement ¹³C metabolic flux analysis, by allowing the prediction of changes in internal fluxes before carbon labelling experiments.</p

Bone Quality in CKD Patients: Current Concepts and Future Directions – Part I

Background: There is ample evidence that patients with CKD have an increased risk of osteoporotic fractures. Bone fragility is not only influenced by low bone volume and mass but also by poor microarchitecture and tissue quality. More emphasis has been given to the quantitative rather than qualitative assessment of bone health, both in general population and CKD patients. Although bone mineral density (BMD) is a very useful clinical tool in assessing bone strength, it may underestimate the fracture risk in CKD patients. Serum and urinary bone biomarkers have been found to be reflective of bone activities and predictive of fractures independently of BMD in CKD patients. Bone quality and fracture risk in CKD patients can be better assessed by utilizing new technologies such as trabecular bone score and high-resolution imaging studies. Additionally, invasive assessments such as bone histology and micro-indentation are useful counterparts in the evaluation of bone quality. Summary: A precise diagnosis of the underlying skeletal abnormalities in CKD patients is crucial to prevent further bone loss and fractures. We must consider bone quantity and quality abnormalities for management of CKD patients. Here in this part I, we are focusing on advances in bone quality diagnostics that are expected to help in proper understanding of the bone health in CKD patients. Key Messages: Assessment of bone quality and quantity in CKD patients is essential. Both noninvasive and invasive techniques for the assessment of bone quality are available

Bone Quality in Chronic Kidney Disease Patients: Current Concepts and Future Directions – Part II

Background: Patients with chronic kidney disease (CKD) have an increased risk of osteoporotic fractures, which is due not only to low bone volume and mass but also poor microarchitecture and tissue quality. The pharmacological and nonpharmacological interventions detailed, herein, are potential approaches to improve bone health in CKD patients. Various medications build up bone mass but also affect bone tissue quality. Antiresorptive therapies strikingly reduce bone turnover; however, they can impair bone mineralization and negatively affect the ability to repair bone microdamage and cause an increase in bone brittleness. On the other hand, some osteoporosis therapies may cause a redistribution of bone structure that may improve bone strength without noticeable effect on BMD. This may explain why some drugs can affect fracture risk disproportionately to changes in BMD. Summary: An accurate detection of the underlying bone abnormalities in CKD patients, including bone quantity and quality abnormalities, helps in institution of appropriate management strategies. Here in this part II, we are focusing on advancements in bone therapeutics that are anticipated to improve bone health and decrease mortality in CKD patients. Key Messages: Therapeutic interventions to improve bone health can potentially advance life span. Emphasis should be given to the impact of various therapeutic interventions on bone quality

Comparative Studies on Naturally Occurring Antikeratin Antibodies in Human Sera

Comparative studies on the specificity of the so-called antiepidermal antibodies (Abs) found in human sera were performed by immunoblotting, enzyme-linked immunosorbent assay (ELISA), and immunoelectron microscopy (LEM). After a screening test by indirect immunofluorescence (IF), sera obtained from patients with various diseases and controls could be classified in 5 different groups according to the IF patterns on the epidermis: sera reactive with: (1) the stratum corneum (SC); (2) the upper layer (U-Cyt); (3) the whole epidermis (G-Cyt); (4) basal cells (B-Cyt); and (5) negative ones. By immunoblotting, all the 23 IF-positive sera were found to bind to one or more keratin bands, and did not show any reactivity with epidermal Nonidet P-40 soluble proteins. SC-Abs were mainly directed against a 67 kD Keratin band, whereas U-Cyt- and G-Cyt-Abs bound to both 58-56 kD and 67-63 kD keratins. B-Cyt-Abs reacted strongly with 63 kD keratins and slightly with a 50 kD band. Antikeratin Abs were detected by immunoblotting even in the IF-negative sera. The ELISA study showed that sera with high IF titers contained high levels of antikeratin Abs. In the IEM study using sera containing U-Cyt- or B-Cyt-Abs, 2 distinct reaction patterns were demonstrated: U-Cyt-Abs stained tonofilaments of suprabasal keratinocytes, while B-Cyt- Abs characteristically reacted with those of basal cells. Moreover, SC-, U-Cyt-, and G-Cyt-Abs were absorbed out by insoluble epidermal proteins, and B-Cyt-Abs were decreased in titer after the absorption test. The present study provides strong evidence that most, though not all, human antiepidermal Abs are directed against different keratin polypeptides, and that antikeratin Abs commonly occur in almost all human sera

Bone Quality and Fractures in Women with Osteoporosis Treated with Bisphosphonates for 1 to 14 Years

Oral bisphosphonates are the primary medication for osteoporosis, but concerns exist regarding potential bone-quality changes or low-energy fractures. This cross-sectional study used artificial intelligence methods to analyze relationships among bisphosphonate treatment duration, a wide variety of bone-quality parameters, and low-energy fractures. Fourier transform infrared spectroscopy and histomorphometry quantified bone-quality parameters in 67 osteoporotic women treated with oral bisphosphonates for 1 to 14 years. Artificial intelligence methods established two models relating bisphosphonate treatment duration to bone-quality changes and to low-energy clinical fractures. The model relating bisphosphonate treatment duration to bone quality demonstrated optimal performance when treatment durations of 1 to 8 years were separated from treatment durations of 9 to 14 years. This may be due to a change in relationship of bone-quality parameters with treatment duration. This model also showed that the effects of bisphosphonate treatment duration were most highly correlated with changes in means and standard deviations of infrared spectroscopically derived mineral and matrix parameters and histomorphometric bone turnover parameters. A second model related treatment duration to bone fracture in all 22 patients who fractured while on treatment with bisphosphonates for more than 8 years. This second model showed that bisphosphonate treatment duration, not hip bone mineral density (BMD), was the most strongly correlated parameter to these low-energy bone fractures. Application of artificial intelligence enabled analysis of large quantities of structural, cellular, mineral, and matrix bone-quality parameters to determine relationships with long-term oral bisphosphonate treatment and fracture. Infrared spectroscopy provides clinically relevant bone-quality information of which bone mineral purity is among the most relevant. Nine or more years of bisphosphonate treatment was associated with abnormal bone mineral purity, matrix abnormalities, and low-energy fractures. These data justify limiting bisphosphonate treatment duration to 8 years

Pesticides in roof runoff: Study of a rural site and a suburban site

The quality of stored roof runoff in terms of pesticide pollution was assessed over a one-year period. Two tanks, located at a rural and suburban site, respectively, were sampled monthly. The two studied collection surface were respectively a tile slope roof and a bituminous flat roof. Four hundred and five compounds and metabolites were screened using liquid and gas chromatography coupled with various detection systems. Principal Component Analysis was applied to the data sets to elucidate patterns. At the rural site, two groups of compounds associated with two different types of agriculture, vineyard and crops, were distinguished. The most frequently detected compound was glyphosate (83%) which is the most commonly used herbicide in French vineyards. At the suburban site, quantified compounds were linked to agriculture rather than urban practices. In addition, all samples were contaminated with mecoprop which is a roof-protecting agent. Its presence was attributed to the nature of roofing material used for rainwater collection. For both sites, the highest number and concentrations of compounds and metabolites were recorded at the end of spring and through summer. These results are consistent with treatment periods and higher temperatures

Validação laboratorial e fisiológica de conjunto comercial para a quantificação de corticóides fecais em chimpanzé (Pan troglodytes) e orangotango (Pongo pygmaeus), cativos e submetidos a enriquecimentos ambientais

Neste trabalho foi realizado estudo comparativo dos níveis de corticóides fecais (CF) de chimpanzé (Pan troglodytes) e orangotango (Pongo pygmaeus). Foram analisadas amostras coletadas em duas fases distintas, relacionadas com a introdução de técnicas de enriquecimento ambiental, a saber: Base (antes da introdução) e Habituação (imediatamente após). Realizamos as validações do conjunto comercial para radioimunoensaio ImmunuChemTM Double Antibody Corticosterone da MP Biomedicals, para mensuração de CF. A validação laboratorial dos conjuntos diagnósticos para uso em extrato fecal de primatas foi realizada pelo método de paralelismo, no qual, para cada espécie, concentrações conhecidas de corticosterona foram adicionadas a um pool de extratos fecais, sendo estas amostras analisadas em seguida. As inclinações das curvas obtidas nestes ensaios e da curva padrão do ensaio foram então comparadas. Os resultados obtidos para chimpanzé e orangotango, foram respectivamente, Y= 17,23+1,31*X;R^2=0,98 e Y=11,14+1,29*X; R^2=0,99. Para a validação fisiológica, foi utilizada a introdução de técnicas de enriquecimento ambiental como causador de aumento dos níveis de CF, conseqüentes à indução de resposta do tipo estresse. Os resultados foram expressos em médias e erros-padrão da média. As concentrações médias destes corticóides foram: chimpanzés: Base (5,90 +/-2,41x10³ ng/g de fezes), Habituação (14,92 +/- 4,66x10³ ng/g de fezes) e para o orangotango: Base (91,1 +/- 30,0x10³ ng/g de fezes), Habituação (185,1 +/- 57x10³ng/g de fezes). Houve diferença significativa (P&lt;0,05) para os valores destes CF para ambas as espécies entre as duas fases estudadas.A comparative study of fecal corticoids (FC) concentrations was carried out with chimpanzees (Pan troglodytes) e orangutans (Pongo pygmaeus). Fecal samples were collected before (Basal) and just after (Habituation) enrichment introduction and analyzed. We performed biochemical and physiological validations of the ImmunuChemTM Double Antibody Corticosterone kit for radioimmunoassay from MP Biomedicals for quantifying FC concentrations. To establish the biochemical validity of our assay we performed parallelism assays in which pooled fecal extracts from both species were spiked with known quantities of corticosterone standard and the slopes of the curves obtained with these samples and the standard curves of the kits were compared.The correlation coefficients were R^2=0.98 (Y= 17.23+1.31*X) for chimpanzees and R^2=0.99 (Y=11.14+1.29*X) for orangutans. For biological validation, we used the introduction of environmental enrichment to trigger a rise in FC levels as a consequence of the response to a stressor. Concentrations were expressed as mean and SEM. Mean concentrations of fecal corticosteroids were: Basal: 5.90 ± 2.41 x10³ ng/g of feces, Habituation: 14.92± 4.66 x10³ ng/g of feces for chimpanzees and Basal: 91.1 ± 30.0 x10³ ng/g of feces, Habituation: 185.1 ± 57 x10³ ng/g of feces for orangutans. For both species, the mean concentrations of Basal and Habituation periods were significantly different

Comparative thermophysiology of marine synechococcus CRD1 strains isolated from different thermal niches in iron-depleted areas

Marine Synechococcus cyanobacteria are ubiquitous in the ocean, a feature likely related to their extensive genetic diversity. Amongst the major lineages, clades I and IV preferentially thrive in temperate and cold, nutrient-rich waters, whilst clades II and III prefer warm, nitrogen or phosphorus-depleted waters. The existence of such cold (I/IV) and warm (II/III) thermotypes is corroborated by physiological characterization of representative strains. A fifth clade, CRD1, was recently shown to dominate the Synechococcus community in iron-depleted areas of the world ocean and to encompass three distinct ecologically significant taxonomic units (ESTUs CRD1A-C) occupying different thermal niches, suggesting that distinct thermotypes could also occur within this clade. Here, using comparative thermophysiology of strains representative of these three CRD1 ESTUs we show that the CRD1A strain MITS9220 is a warm thermotype, the CRD1B strain BIOS-U3-1 a cold temperate thermotype, and the CRD1C strain BIOS-E4-1 a warm temperate stenotherm. Curiously, the CRD1B thermotype lacks traits and/or genomic features typical of cold thermotypes. In contrast, we found specific physiological traits of the CRD1 strains compared to their clade I, II, III, and IV counterparts, including a lower growth rate and photosystem II maximal quantum yield at most temperatures and a higher turnover rate of the D1 protein. Together, our data suggests that the CRD1 clade prioritizes adaptation to low-iron conditions over temperature adaptation, even though the occurrence of several CRD1 thermotypes likely explains why the CRD1 clade as a whole occupies most iron-limited waters

Metagenomes of the Picoalga Bathycoccus from the Chile Coastal Upwelling

Among small photosynthetic eukaryotes that play a key role in oceanic food webs, picoplanktonic Mamiellophyceae such as Bathycoccus, Micromonas, and Ostreococcus are particularly important in coastal regions. By using a combination of cell sorting by flow cytometry, whole genome amplification (WGA), and 454 pyrosequencing, we obtained metagenomic data for two natural picophytoplankton populations from the coastal upwelling waters off central Chile. About 60% of the reads of each sample could be mapped to the genome of Bathycoccus strain from the Mediterranean Sea (RCC1105), representing a total of 9 Mbp (sample T142) and 13 Mbp (sample T149) of non-redundant Bathycoccus genome sequences. WGA did not amplify all regions uniformly, resulting in unequal coverage along a given chromosome and between chromosomes. The identity at the DNA level between the metagenomes and the cultured genome was very high (96.3% identical bases for the three larger chromosomes over a 360 kbp alignment). At least two to three different genotypes seemed to be present in each natural sample based on read mapping to Bathycoccus RCC1105 genome