Algorithm to Automatically Detect Structure Symmetry and Apply Symmetry Concepts in Structural Analysis�

School of Civil and Environmental Engineerin

Microsatellite alteration and immunohistochemical expression profile of chromosome 9p21 in patients with sporadic renal cell carcinoma following surgical resection.

BACKGROUND: Long-term prognostic significance of loss of heterozygosity on chromosome 9p21 for localized renal cell carcinoma following surgery remains unreported. The study assessed the frequency of deletions of different loci of chromosome 9p along with immunohistochemical profile of proteins in surgically resected renal cancer tissue and correlated this with long-term outcomes. METHODS: DNA was extracted from renal tumours and corresponding normal kidney tissues in prospectively collected samples of 108 patients who underwent surgical resection for clinically localized disease between January 2001 and December 2005, providing a minimum of 9 years follow-up for each participant. After checking quality of DNA, amplified by PCR, loss of heterozygosity (LOH) on chromosome 9p was assessed using 6 microsatellite markers in 77 clear cell carcinoma. Only 5 of the markers showed LOH (D9S1814, D9S916, D9S974, D9S942, and D9S171). Protein expression of p15(INK4b), p16(INK4a), p14(ARF), CAIX, and adipose related protein (ADFP) were demonstrated by immunostaining in normal and cancer tissues. Loss of heterozygosity for microsatellite analysis was correlated with tumour characteristics, recurrence free, cancer specific, and overall survival, including significance of immunohistochemical profile of protein expressions. RESULTS: The main deletion was found at loci telomeric to CDKN2A region at D9S916. There was a significant correlation between frequency of LOH stage (p = 0.005) and metastases (p = 0.006) suggesting a higher LOH for advanced and aggressive renal cell carcinoma. Most commonly observed LOH in the 3 markers: D9S916, D9S974, and D9S942 were associated with poor survival, and were statistically significant on multivariate analysis. Immunohistochemical expression of p14, p15, and p16 proteins were either low or absent in cancer tissue compared to normal. CONCLUSIONS: Loss of heterozygosity of p921 chromosome is associated with aggressive tumours, and predicts cancer specific or recurrence free survival on long-term follow-up. ELECTRONIC SUPPLEMENTARY MATERIAL: The online version of this article (doi:10.1186/s12885-016-2514-8) contains supplementary material, which is available to authorized users

Increased fluid flow activity in shallow sediments at the 3 km Long Hugin Fracture in the central North Sea

The North Sea hosts a wide variety of seafloor seeps that may be important for transfer of chemical species, such as methane, from the Earth's interior to its exterior. Here we provide geochemical and geophysical evidence for fluid flow within shallow sediments at the recently discovered, 3-km long Hugin Fracture in the Central North Sea. Although venting of gas bubbles was not observed, concentrations of dissolved methane were significantly elevated (up to six-times background values) in the water column at various locations above the fracture, and microbial mats that form in the presence of methane were observed at the seafloor. Seismic amplitude anomalies revealed a bright spot at a fault bend that may be the source of the water column methane. Sediment porewaters recovered in close proximity to the Hugin Fracture indicate the presence of fluids from two different shallow (<500m) sources: (i) a reduced fluid characterized by elevated methane concentrations and/or high levels of dissolved sulfide (up to 6 mmol L−1), and (ii) a low-chlorinity fluid (Cl ∼305 mmol L−1) that has low levels of dissolved methane and/or sulfide. The area of the seafloor affected by the presence of methane-enriched fluids is similar to the footprint of seepage from other morphological features in the North Sea

Dynamic replication strategies in data grid systems: A survey

In data grid systems, data replication aims to increase availability, fault tolerance, load balancing and scalability while reducing bandwidth consumption, and job execution time. Several classification schemes for data replication were proposed in the literature, (i) static vs. dynamic, (ii) centralized vs. decentralized, (iii) push vs. pull, and (iv) objective function based. Dynamic data replication is a form of data replication that is performed with respect to the changing conditions of the grid environment. In this paper, we present a survey of recent dynamic data replication strategies. We study and classify these strategies by taking the target data grid architecture as the sole classifier. We discuss the key points of the studied strategies and provide feature comparison of them according to important metrics. Furthermore, the impact of data grid architecture on dynamic replication performance is investigated in a simulation study. Finally, some important issues and open research problems in the area are pointed out

Bridging Legends and Science: Field Evidence of a Large Tsunami that Affected the Kingdom of Tonga in the 15th Century

The pre-colonial history (i.e. before the 16th century) of Tonga and West Polynesia still suffers from major gaps despite significant scientific advances in recent years, particularly in the field of archaeology. By the 14th century, the powerful Tu’i Tonga kingdom united the islands of the Tongan archipelago under a centralised authority and, according to tradition, extended its influence to neighbouring island groups in the Central Pacific. However, some periods of deep crisis were identified, e.g. in the mid- 15th century, marked by an abrupt cessation of inter-archipelago migration on the deep seas in the Pacific, significant cultural changes, and a decrease in accessible natural resources. The origins of these disturbances are still debated, and they are usually assigned to internal political problems or loss of external influence vis-à-vis neighboring chiefdoms. However, the hypothesis of a major natural disaster was rarely suggested up to now, while field evidence points to the occurrence of a very large tsunami in the past, including the presence of numerous megablocks that were deposited by a “red wave” (orpeau kula, which also mean tsunami in the Tongan language) according to a local myth. Drawing on a body of new evidence from sedimentary signatures and radiocarbon dating of charcoal and marine bioclasts, geomorphology, and sedimentology, in support of previously published archaeological data, we argue that a large tsunami inundated large areas of Tongatapu island in the mid-15th century with runup heights up to 30 m, and that the Tu’i Tonga kingdom was severely impacted by this event. We also discuss the likely sources of this tsunami.</jats:p