Serum prevalence to non-viral pathogens in wild felids of Southern Primorye, Russia

Serum prevalence to six different non-viral pathogens was estimated for big Russian cats (Amur tiger (Panthera tigris altaica) and the Far Eastern leopard (Panthera pardus orientalis)) in Southern Primorye, Russia (n = 26) in 2008–2016. Serum samples from smaller cats (Eurasian lynx (Lynx lynx) and Far Eastern wildcat (Prionailurus bengalensis euptilurus)) were also tested for these pathogens (n = 28) during the same period. Felids of Russian Southern Primorye showed serum prevalence to five out of six tested pathogens. Antibodies to Candida sp. and Trichinella sp. were found to be much more widespread in cats (47% and 42%) than antibodies to other tested pathogens (20% and less). Large cats demonstrated a higher serum prevalence to these pathogens than smaller ones. We did not detect animals seropositive to Coxiella burnetii

Coulomb breakup of 17Ne from the viewpoint of nuclear astrophysics

By the Coulomb breakup of 17Ne, the time-reversed reaction 15O(2p,γ)17Ne has been studied. This reaction might play an important role in the rp process, as a break-out reaction of the hot CNO cycle. The secondary 17Ne ion beam with an energy of 500 MeV/nucleon has been dissociated in a Pb target. The reaction products have been detected with the LAND-R3B experimental setup at GSI. The preliminary differential and integral Coulomb dissociation cross section sCoul has been determined, which then will be converted into a photo-absorption cross section sphoto, and a two-proton radiative capture cross section σcap. Additionally, information about the structure of the 17Ne, a potential two-proton halo nucleus, will be received. The analysis is in progress. \ua9 Copyright owned by the author(s) under the terms of the Creative Commons Attribution-NonCommercial-ShareAlike Licence

Origin and spread of human mitochondrial DNA haplogroup U7

Human mitochondrial DNA haplogroup U is among the initial maternal founders in Southwest Asia and Europe and one that best indicates matrilineal genetic continuity between late Pleistocene hunter-gatherer groups and present-day populations of Europe. While most haplogroup U subclades are older than 30 thousand years, the comparatively recent coalescence time of the extant variation of haplogroup U7 (~16–19 thousand years ago) suggests that its current distribution is the consequence of more recent dispersal events, despite its wide geographical range across Europe, the Near East and South Asia. Here we report 267 new U7 mitogenomes that – analysed alongside 100 published ones – enable us to discern at least two distinct temporal phases of dispersal, both of which most likely emanated from the Near East. The earlier one began prior to the Holocene (~11.5 thousand years ago) towards South Asia, while the later dispersal took place more recently towards Mediterranean Europe during the Neolithic (~8 thousand years ago). These findings imply that the carriers of haplogroup U7 spread to South Asia and Europe before the suggested Bronze Age expansion of Indo-European languages from the Pontic-Caspian Steppe region

Genomic analyses inform on migration events during the peopling of Eurasia.

High-coverage whole-genome sequence studies have so far focused on a limited number of geographically restricted populations, or been targeted at specific diseases, such as cancer. Nevertheless, the availability of high-resolution genomic data has led to the development of new methodologies for inferring population history and refuelled the debate on the mutation rate in humans. Here we present the Estonian Biocentre Human Genome Diversity Panel (EGDP), a dataset of 483 high-coverage human genomes from 148 populations worldwide, including 379 new genomes from 125 populations, which we group into diversity and selection sets. We analyse this dataset to refine estimates of continent-wide patterns of heterozygosity, long- and short-distance gene flow, archaic admixture, and changes in effective population size through time as well as for signals of positive or balancing selection. We find a genetic signature in present-day Papuans that suggests that at least 2% of their genome originates from an early and largely extinct expansion of anatomically modern humans (AMHs) out of Africa. Together with evidence from the western Asian fossil record, and admixture between AMHs and Neanderthals predating the main Eurasian expansion, our results contribute to the mounting evidence for the presence of AMHs out of Africa earlier than 75,000 years ago.Support was provided by: Estonian Research Infrastructure Roadmap grant no 3.2.0304.11-0312; Australian Research Council Discovery grants (DP110102635 and DP140101405) (D.M.L., M.W. and E.W.); Danish National Research Foundation; the Lundbeck Foundation and KU2016 (E.W.); ERC Starting Investigator grant (FP7 - 261213) (T.K.); Estonian Research Council grant PUT766 (G.C. and M.K.); EU European Regional Development Fund through the Centre of Excellence in Genomics to Estonian Biocentre (R.V.; M.Me. and A.Me.), and Centre of Excellence for Genomics and Translational Medicine Project No. 2014-2020.4.01.15-0012 to EGC of UT (A.Me.) and EBC (M.Me.); Estonian Institutional Research grant IUT24-1 (L.S., M.J., A.K., B.Y., K.T., C.B.M., Le.S., H.Sa., S.L., D.M.B., E.M., R.V., G.H., M.K., G.C., T.K. and M.Me.) and IUT20-60 (A.Me.); French Ministry of Foreign and European Affairs and French ANR grant number ANR-14-CE31-0013-01 (F.-X.R.); Gates Cambridge Trust Funding (E.J.); ICG SB RAS (No. VI.58.1.1) (D.V.L.); Leverhulme Programme grant no. RP2011-R-045 (A.B.M., P.G. and M.G.T.); Ministry of Education and Science of Russia; Project 6.656.2014/K (S.A.F.); NEFREX grant funded by the European Union (People Marie Curie Actions; International Research Staff Exchange Scheme; call FP7-PEOPLE-2012-IRSES-number 318979) (M.Me., G.H. and M.K.); NIH grants 5DP1ES022577 05, 1R01DK104339-01, and 1R01GM113657-01 (S.Tis.); Russian Foundation for Basic Research (grant N 14-06-00180a) (M.G.); Russian Foundation for Basic Research; grant 16-04-00890 (O.B. and E.B); Russian Science Foundation grant 14-14-00827 (O.B.); The Russian Foundation for Basic Research (14-04-00725-a), The Russian Humanitarian Scientific Foundation (13-11-02014) and the Program of the Basic Research of the RAS Presidium “Biological diversity” (E.K.K.); Wellcome Trust and Royal Society grant WT104125AIA & the Bristol Advanced Computing Research Centre (http://www.bris.ac.uk/acrc/) (D.J.L.); Wellcome Trust grant 098051 (Q.A.; C.T.-S. and Y.X.); Wellcome Trust Senior Research Fellowship grant 100719/Z/12/Z (M.G.T.); Young Explorers Grant from the National Geographic Society (8900-11) (C.A.E.); ERC Consolidator Grant 647787 ‘LocalAdaptatio’ (A.Ma.); Program of the RAS Presidium “Basic research for the development of the Russian Arctic” (B.M.); Russian Foundation for Basic Research grant 16-06-00303 (E.B.); a Rutherford Fellowship (RDF-10-MAU-001) from the Royal Society of New Zealand (M.P.C.)

Fluorescence Mapping of Agricultural Fields Utilizing Drone-Based LIDAR

A compact and low-weight LIDAR instrument has been developed for laser-induced fluorescence spectroscopy sensing of maize fields. Fluorescence LIDAR had to be installed on a small industrial drone so that its mass was <2 kg and power consumption was <5 W. The LIDAR instrument utilized a continuous wave diode laser (405 nm, 150 mW) for inducing fluorescence and a small spectrometer for backscattered photons acquisition. For field testing, the LIDAR instrument was installed on a quadcopter for remote sensing of plants in a maize field in three periods of the plant’s life. The obtained fluorescence signal maps have demonstrated that the average chlorophyll content is rather non-uniform over the field and tends to increase through the plant vegetation cycle. Field tests proved the feasibility and perspectives of autonomous LIDAR sensing of agricultural fields from drones for the detection and location of plants under stress

Method of Optical Diagnostics of Grain Seeds Infected with Fusarium

Optical sensors have shown good capabilities for detecting and monitoring plant diseases, including fusariosis. The spectral characteristics of the excitation and luminescence of wheat, oat and barley seeds were measured using a diffraction spectrofluorimeter in the range of 180–700 nm. It was found that during infection, the spectral density of the absorption capacity increases and the curve ηe(λ) shifts upwards in the range of 380–450 nm. The shift to the left is also noticeable for the wheat and barley spectra. The photoluminescence flux at λe = 232 nm increased by 1.71 times when oat seeds were infected, by 2.63 times when wheat was infected and by 3.14 times when barley was infected. The dependences of the infection degree on the photoluminescence flux are statistically and reliably approximated by linear regression models with determination coefficients R2 = 0.83–0.95. The method of determining the degree of infection can include both absolute measurements of photoluminescence flux in the range of 290–380 nm and measurements of the flux ratios when excited by radiation of 232 nm and 424 nm for wheat and 485 nm for barley. An optoelectronic device for remote monitoring can be designed in order to implement the methodology for determining the degree of infection of agricultural plant seeds

Structural and Optical Properties of Silicon Carbide Powders Synthesized from Organosilane Using High-Temperature High-Pressure Method

The development of new strategies for the mass synthesis of SiC nanocrystals with high structure perfection and narrow particle size distribution remains in demand for high-tech applications. In this work, the size-controllable synthesis of the SiC 3C polytype, free of sp2 carbon, with high structure quality nanocrystals, was realized for the first time by the pyrolysis of organosilane C12H36Si6 at 8 GPa and temperatures up to 2000 °C. It is shown that the average particle size can be monotonically changed from ~2 nm to ~500 nm by increasing the synthesis temperature from 800 °C to 1400 °C. At higher temperatures, further enlargement of the crystals is impeded, which is consistent with the recrystallization mechanism driven by a decrease in the surface energy of the particles. The optical properties investigated by IR transmission spectroscopy, Raman scattering, and low-temperature photoluminescence provided information about the concentration and distribution of carriers in nanoparticles, as well as the dominant type of internal point defects. It is shown that changing the growth modes in combination with heat treatment enables control over not only the average crystal size, but also the LO phonon—plasmon coupled modes in the crystals, which is of interest for applications related to IR photonics

Biodiversity of Coleoptera (Insecta) in the Middle and Lower Volga Regions (Russia)

(1) Background: The conservation of entomofauna in individual macroregions requires efforts to study the distribution and abundance of insects. For this purpose, databases are created that enumerate this information. Such databases, with the processing of significant factual material, make it possible to objectively assess the status of a species and, if necessary, take measures for its protection. The aim of the paper is to describe the modern Coleoptera fauna in nine regions of Russia on the basis of a recently published dataset. (2) Methods: We conducted our own studies in 1994, 1996, 1998–2003 and 2005–2022. The dataset also includes data from museum specimens from other years. We used a variety of methods, such as sifting through litter, searching under the bark of trees and stumps, trapping by light, soil traps, beer traps, window traps, etc. For each observation, the coordinates of the find, the number of individuals observed and the date were recorded. (3) Results: The dataset contains data on 1469 species and subspecies of Coleoptera from 85 families found in the Volga Region. In total, there are 31,433 samples and 9072 occurrences in the dataset. (4) Conclusions: The largest families in terms of species diversity are Curculionidae (202 species), Carabidae (145 species) and Chrysomelidae (142 species). There are 54 species of Coleoptera with a northern range boundary in the macroregion, two species with a southern range boundary and one species with an eastern range boundary. Twenty-one invasive Coleoptera species have been recorded in the macroregion