Inelastic and elastic collision rates for triplet states of ultracold strontium

We report measurement of the inelastic and elastic collision rates for ^{88}Sr atoms in the (5s5p)^3P_0 state in a crossed-beam optical dipole trap. This is the first measurement of ultracold collision properties of a ^3P_0 level in an alkaline-earth atom or atom with similar electronic structure. Since the (5s5p)^3P_0 state is the lowest level of the triplet manifold, large loss rates indicate the importance of principle-quantum-number-changing collisions at short range. We also provide an estimate of the collisional loss rates for the (5s5p){^3P_2} state.Comment: 4 pages 5 figure

Photoassociative spectroscopy at long range in ultracold strontium

We report photoassociative spectroscopy of $^{88}$Sr$_2$ in a magneto-optical trap operating on the ${^1S_0}\to{^3P_1}$ intercombination line at 689 nm. Photoassociative transitions are driven with a laser red-detuned by 600-2400 MHz from the ${^1S_0}\to{^1P_1}$ atomic resonance at 461 nm. Photoassociation takes place at extremely large internuclear separation, and the photoassociative spectrum is strongly affected by relativistic retardation. A fit of the transition frequencies determines the ${^1P_1}$ atomic lifetime ($\tau=5.22 \pm 0.03$ ns) and resolves a discrepancy between experiment and recent theoretical calculations.Comment: 4 pages, 4 figures, submitte

Spectroscopic determination of the s-wave scattering lengths of 86Sr and 88Sr

We report the use of photoassociative spectroscopy to determine the ground state s-wave scattering lengths for the main bosonic isotopes of strontium, 86Sr and 88Sr. Photoassociative transitions are driven with a laser red-detuned by up to 1400 GHz from the 1S0-1P1 atomic resonance at 461 nm. A minimum in the transition amplitude for 86Sr at -494+/-5 GHz allows us to determine the scattering lengths 610a0 < a86 < 2300a0 for 86Sr and a much smaller value of -1a0 < a88 < 13a0 for 88Sr.Comment: 4 pages, 3 figures, submitted to Physical Review Letter

Identification and validation of genetic variants predictive of gait in standardbred horses

Several horse breeds have been specifically selected for the ability to exhibit alternative patterns of locomotion, or gaits. A premature stop codon in the gene DMRT3 is permissive for “gaitedness” across breeds. However, this mutation is nearly fixed in both American Standardbred trotters and pacers, which perform a diagonal and lateral gait, respectively, during harness racing. This suggests that modifying alleles must influence the preferred gait at racing speeds in these populations. A genome-wide association analysis for the ability to pace was performed in 542 Standardbred horses (n = 176 pacers, n = 366 trotters) with genotype data imputed to ~74,000 single nucleotide polymorphisms (SNPs). Nineteen SNPs on nine chromosomes (ECA1, 2, 6, 9, 17, 19, 23, 25, 31) reached genome-wide significance (p < 1.44 x 10−6). Variant discovery in regions of interest was carried out via whole-genome sequencing. A set of 303 variants from 22 chromosomes with putative modifying effects on gait was genotyped in 659 Standardbreds (n = 231 pacers, n = 428 trotters) using a high-throughput assay. Random forest classification analysis resulted in an out-of-box error rate of 0.61%. A conditional inference tree algorithm containing seven SNPs predicted status as a pacer or trotter with 99.1% accuracy and subsequently performed with 99.4% accuracy in an independently sampled population of 166 Standardbreds (n = 83 pacers, n = 83 trotters). This highly accurate algorithm could be used by owners/trainers to identify Standardbred horses with the potential to race as pacers or as trotters, according to the genotype identified, prior to initiating training and would enable fine-tuning of breeding programs with designed matings. Additional work is needed to determine both the algorithm’s utility in other gaited breeds and whether any of the predictive SNPs play a physiologically functional role in the tendency to pace or tag true functional alleles

Canine NAPEPLD-associated models of human myelin disorders

Canine leukoencephalomyelopathy (LEMP) is a juvenile-onset neurodegenerative disorder of the CNS white matter currently described in Rottweiler and Leonberger dogs. Genome-wide association study (GWAS) allowed us to map LEMP in a Leonberger cohort to dog chromosome 18. Subsequent whole genome re-sequencing of a Leonberger case enabled the identification of a single private homozygous non-synonymous missense variant located in the highly conserved metallo-beta-lactamase domain of the N-acyl phosphatidylethanolamine phospholipase D (NAPEPLD) gene, encoding an enzyme of the endocannabinoid system. We then sequenced this gene in LEMP-affected Rottweilers and identified a different frameshift variant, which is predicted to replace the C-terminal metallo-beta-lactamase domain of the wild type protein. Haplotype analysis of SNP array genotypes revealed that the frameshift variant was present in diverse haplotypes in Rottweilers, and also in Great Danes, indicating an old origin of this second NAPEPLD variant. The identification of different NAPEPLD variants in dog breeds affected by leukoencephalopathies with heterogeneous pathological features, implicates the NAPEPLD enzyme as important in myelin homeostasis, and suggests a novel candidate gene for myelination disorders in people

U-series Disequilibria in Guatemalan Lavas, Crustal Contamination, and Implications for Magma Genesis Along the Central American Subduction Zone

New U-series results indicate that Guatemalan volcanic rocks display both 238U and 230Th excesses. 230Th excess is restricted to volcanoes in central Guatemala, both along and behind the front. 230Th excess correlates with a number of incompatible element ratios, such as Th/Nb and Ba/Th. It also shows a negative correlation with MgO. Guatemalan volcanic rocks have (230Th/232Th) ratios that overlap those of Costa Rican volcanics and are therefore considerably lower than the unusually high ratios characterizing volcanic rocks from Nicaragua. Along-arc variations in (230Th/232Th) therefore mirror those of a number of diagnostic geochemical parameters, such as Ba/La, which are symmetrical about a peak in west central Nicaragua. The one siliceous lava analyzed, from the Cerro Quemado dome complex, has a recognizable crustal imprint, distinguished, for instance, by high Th/Nb and low Ba/Th. In mafic samples, 238U excess is attributed to addition of a U-enriched fluid component from the subducting Cocos plate. Our preferred explanation for 230Th excess in Guatemalan mafic samples, on the other hand, is crustal contamination, consistent with the relatively high Th/Nb and low Ba/Th ratios in these samples. We suspect, however, that crustal contamination only exerts a sizable control over the U-series disequilibrium of mafic magmas in Guatemala, and not elsewhere along the Central American volcanic front. This agrees with previously published trace element and isotopic evidence that throughout Central America, with the exception of Guatemala, mafic magmas are largely uncontaminated by crustal material.The work was supported by NSF grant OCE-0405666

Two-photon photoassociative spectroscopy of ultracold 88-Sr

We present results from two-photon photoassociative spectroscopy of the least-bound vibrational level of the X$^1\Sigma_g^+$ state of the $^{88}$Sr$_2$ dimer. Measurement of the binding energy allows us to determine the s-wave scattering length, $a_{88}=-1.4(6) a_0$. For the intermediate state, we use a bound level on the metastable $^1S_0$-$^3P_1$ potential, which provides large Franck-Condon transition factors and narrow one-photon photoassociative lines that are advantageous for observing quantum-optical effects such as Autler-Townes resonance splittings.Comment: 9 pages, 9 figure

Absorption Imaging and Spectroscopy of Ultracold Neutral Plasmas

Absorption imaging and spectroscopy can probe the dynamics of an ultracold neutral plasma during the first few microseconds after its creation. Quantitative analysis of the data, however, is complicated by the inhomogeneous density distribution, expansion of the plasma, and possible lack of global thermal equilibrium for the ions. In this article we describe methods for addressing these issues. Using simple assumptions about the underlying temperature distribution and ion motion, the Doppler-broadened absorption spectrum obtained from plasma images can be related to the average temperature in the plasma.Comment: 14 pages, 8 figure

Numerical modeling of collisional dynamics of Sr in an optical dipole trap

We describe a model of inelastic and elastic collisional dynamics of atoms in an optical dipole trap that utilizes numerical evaluation of statistical mechanical quantities and numerical solution of equations for the evolution of number and temperature of trapped atoms. It can be used for traps that possess little spatial symmetry and when the ratio of trap depth to sample temperature is relatively small. We compare simulation results with experiments on Sr88 and Sr84, which have well-characterized collisional properties