Atlantic mammal traits: a dataset of morphological traits of mammals in the atlantic forest of south America

Measures of traits are the basis of functional biological diversity. Numerous works consider mean species-level measures of traits while ignoring individual variance within species. However, there is a large amount of variation within species and it is increasingly apparent that it is important to consider trait variation not only between species, but also within species. Mammals are an interesting group for investigating trait-based approaches because they play diverse and important ecological functions (e.g., pollination, seed dispersal, predation, grazing) that are correlated with functional traits. Here we compile a data set comprising morphological and life history information of 279 mammal species from 39,850 individuals of 388 populations ranging from −5.83 to −29.75 decimal degrees of latitude and −34.82 to −56.73 decimal degrees of longitude in the Atlantic forest of South America. We present trait information from 16,840 individuals of 181 species of non-volant mammals (Rodentia, Didelphimorphia, Carnivora, Primates, Cingulata, Artiodactyla, Pilosa, Lagomorpha, Perissodactyla) and from 23,010 individuals of 98 species of volant mammals (Chiroptera). The traits reported include body mass, age, sex, reproductive stage, as well as the geographic coordinates of sampling for all taxa. Moreover, we gathered information on forearm length for bats and body length and tail length for rodents and marsupials. No copyright restrictions are associated with the use of this data set. Please cite this data paper when the data are used in publications. We also request that researchers and teachers inform us of how they are using the data.Fil: Gonçalves, Fernando. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Bovendorp, Ricardo S.. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Beca, Gabrielle. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Bello, Carolina. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Costa Pereira, Raul. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Muylaert, Renata L.. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Rodarte, Raisa R.. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Villar, Nacho. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Souza, Rafael. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Graipel, Maurício E.. Universidade Federal de Santa Catarina; BrasilFil: Cherem, Jorge J.. Caipora Cooperativa, Florianopolis; BrasilFil: Faria, Deborah. Universidade Estadual de Santa Cruz; BrasilFil: Baumgarten, Julio. Universidade Estadual de Santa Cruz; BrasilFil: Alvarez, Martín R.. Universidade Estadual de Santa Cruz; BrasilFil: Vieira, Emerson M.. Universidade do Brasília; BrasilFil: Cáceres, Nilton. Universidade Federal de Santa María. Santa María; BrasilFil: Pardini, Renata. Universidade de Sao Paulo; BrasilFil: Leite, Yuri L. R.. Universidade Federal do Espírito Santo; BrasilFil: Costa, Leonora Pires. Universidade Federal do Espírito Santo; BrasilFil: Mello, Marco Aurelio Ribeiro. Universidade Federal de Minas Gerais; BrasilFil: Fischer, Erich. Universidade Federal do Mato Grosso do Sul; BrasilFil: Passos, Fernando C.. Universidade Federal do Paraná; BrasilFil: Varzinczak, Luiz H.. Universidade Federal do Paraná; BrasilFil: Prevedello, Jayme A.. Universidade do Estado de Rio do Janeiro; BrasilFil: Cruz-Neto, Ariovaldo P.. Universidade Estadual Paulista Julio de Mesquita Filho; BrasilFil: Carvalho, Fernando. Universidade do Extremo Sul Catarinense; BrasilFil: Reis Percequillo, Alexandre. Universidade de Sao Paulo; BrasilFil: Paviolo, Agustin Javier. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Biología Subtropical. Instituto de Biología Subtropical - Nodo Puerto Iguazú | Universidad Nacional de Misiones. Instituto de Biología Subtropical. Instituto de Biología Subtropical - Nodo Puerto Iguazú; ArgentinaFil: Duarte, José M. B.. Universidade Estadual Paulista Julio de Mesquita Filho; Brasil. Fundación Oswaldo Cruz; BrasilFil: Bernard, Enrico. Universidade Federal de Pernambuco; BrasilFil: Agostini, Ilaria. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste. Instituto de Biología Subtropical. Instituto de Biología Subtropical - Nodo Puerto Iguazú | Universidad Nacional de Misiones. Instituto de Biología Subtropical. Instituto de Biología Subtropical - Nodo Puerto Iguazú; ArgentinaFil: Lamattina, Daniela. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentina. Ministerio de Salud de la Nación; ArgentinaFil: Vanderhoeven, Ezequiel Andres. Ministerio de Salud de la Nación; Argentina. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Nordeste; Argentin

The Missing Part of Seed Dispersal Networks: Structure and Robustness of Bat-Fruit Interactions

Mutualistic networks are crucial to the maintenance of ecosystem services. Unfortunately, what we know about seed dispersal networks is based only on bird-fruit interactions. Therefore, we aimed at filling part of this gap by investigating bat-fruit networks. It is known from population studies that: (i) some bat species depend more on fruits than others, and (ii) that some specialized frugivorous bats prefer particular plant genera. We tested whether those preferences affected the structure and robustness of the whole network and the functional roles of species. Nine bat-fruit datasets from the literature were analyzed and all networks showed lower complementary specialization (H2' = 0.37±0.10, mean ± SD) and similar nestedness (NODF = 0.56±0.12) than pollination networks. All networks were modular (M = 0.32±0.07), and had on average four cohesive subgroups (modules) of tightly connected bats and plants. The composition of those modules followed the genus-genus associations observed at population level (Artibeus-Ficus, Carollia-Piper, and Sturnira-Solanum), although a few of those plant genera were dispersed also by other bats. Bat-fruit networks showed high robustness to simulated cumulative removals of both bats (R = 0.55±0.10) and plants (R = 0.68±0.09). Primary frugivores interacted with a larger proportion of the plants available and also occupied more central positions; furthermore, their extinction caused larger changes in network structure. We conclude that bat-fruit networks are highly cohesive and robust mutualistic systems, in which redundancy is high within modules, although modules are complementary to each other. Dietary specialization seems to be an important structuring factor that affects the topology, the guild structure and functional roles in bat-fruit networks

Measurement of the cosmic ray spectrum above 4×10184{\times}10^{18} eV using inclined events detected with the Pierre Auger Observatory

A measurement of the cosmic-ray spectrum for energies exceeding $4{\times}10^{18}$ eV is presented, which is based on the analysis of showers with zenith angles greater than $60^{\circ}$ detected with the Pierre Auger Observatory between 1 January 2004 and 31 December 2013. The measured spectrum confirms a flux suppression at the highest energies. Above $5.3{\times}10^{18}$ eV, the "ankle", the flux can be described by a power law $E^{-\gamma}$ with index $\gamma=2.70 \pm 0.02 \,\text{(stat)} \pm 0.1\,\text{(sys)}$ followed by a smooth suppression region. For the energy ($E_\text{s}$) at which the spectral flux has fallen to one-half of its extrapolated value in the absence of suppression, we find $E_\text{s}=(5.12\pm0.25\,\text{(stat)}^{+1.0}_{-1.2}\,\text{(sys)}){\times}10^{19}$ eV.Comment: Replaced with published version. Added journal reference and DO

Energy Estimation of Cosmic Rays with the Engineering Radio Array of the Pierre Auger Observatory

The Auger Engineering Radio Array (AERA) is part of the Pierre Auger Observatory and is used to detect the radio emission of cosmic-ray air showers. These observations are compared to the data of the surface detector stations of the Observatory, which provide well-calibrated information on the cosmic-ray energies and arrival directions. The response of the radio stations in the 30 to 80 MHz regime has been thoroughly calibrated to enable the reconstruction of the incoming electric field. For the latter, the energy deposit per area is determined from the radio pulses at each observer position and is interpolated using a two-dimensional function that takes into account signal asymmetries due to interference between the geomagnetic and charge-excess emission components. The spatial integral over the signal distribution gives a direct measurement of the energy transferred from the primary cosmic ray into radio emission in the AERA frequency range. We measure 15.8 MeV of radiation energy for a 1 EeV air shower arriving perpendicularly to the geomagnetic field. This radiation energy -- corrected for geometrical effects -- is used as a cosmic-ray energy estimator. Performing an absolute energy calibration against the surface-detector information, we observe that this radio-energy estimator scales quadratically with the cosmic-ray energy as expected for coherent emission. We find an energy resolution of the radio reconstruction of 22% for the data set and 17% for a high-quality subset containing only events with at least five radio stations with signal.Comment: Replaced with published version. Added journal reference and DO

Measurement of the Radiation Energy in the Radio Signal of Extensive Air Showers as a Universal Estimator of Cosmic-Ray Energy

We measure the energy emitted by extensive air showers in the form of radio emission in the frequency range from 30 to 80 MHz. Exploiting the accurate energy scale of the Pierre Auger Observatory, we obtain a radiation energy of 15.8 \pm 0.7 (stat) \pm 6.7 (sys) MeV for cosmic rays with an energy of 1 EeV arriving perpendicularly to a geomagnetic field of 0.24 G, scaling quadratically with the cosmic-ray energy. A comparison with predictions from state-of-the-art first-principle calculations shows agreement with our measurement. The radiation energy provides direct access to the calorimetric energy in the electromagnetic cascade of extensive air showers. Comparison with our result thus allows the direct calibration of any cosmic-ray radio detector against the well-established energy scale of the Pierre Auger Observatory.Comment: Replaced with published version. Added journal reference and DOI. Supplemental material in the ancillary file

Interactions between the bat Sturnira lilium (Chiroptera: Phyllostomidae) and plants of the family Solanaceae

Orientadores: Wesley Rodrigues Silva, Elisabeth Klara Viktoria KalkoTese (doutorado) - Universidade Estadual de Campinas, Instituto de BiologiaResumo: Morcegos têm grande importância ecológica nos Neotrópicos, por serem muito diversos, abundantes e interagirem com várias espécies de plantas e animais. Os morcegos filostomídeos da subfamília Stenodermatinae são frugívoros especializados e importantes dispersores de sementes, sendo que Sturnira lilium tem preferência por frutos de Solanaceae, uma família de grande valor ecológico e econômico. O objetivo do presente estudo foi investigar quatro aspectos principais e testar hipóteses relacionadas à maneira como essa interação ocorre e afeta ambos os grupos. De acordo com o esperado, a dieta de S. lilium foi inteiramente frugívora com uma forte dominância de solanáceas. A abundância de morcegos apresentou dois picos curtos ao longo do ano, ao contrário da produção de frutos que teve um pico único, porém mais longo. Os morcegos deixaram a área durante os meses mais frios e provavelmente migraram para altitudes mais baixas e quentes para escapar do clima severo e procurar por frutos de Solanaceae. A maioria das fêmeas de S. lilium se reproduziu durante os meses mais úmidos e quentes, durante a maior oferta de frutos. As solanáceas mostraram ser uma fonte de alimento confiável para S. lilium e sua fenologia pareceu regular a dinâmica populacional dos morcegos. S. lilium não apresentou fidelidade aos refúgios noturnos e diurnos, e usou uma grande distância de comutação e uma grande área de forrageio em comparação com outros pequenos mamíferos. A dispersão de sementes por S. lilium pareceu ser altamente benéfica para as plantas, de acordo com as hipóteses clássicas de fuga, colonização e dispersão limitada. Não observei evidências de fobia lunar em S. lilium, apesar de ter observado em outros dois filostomídeos frugívoros, Artibeus lituratus e Carollia perspicillata. As diferenças nas respostas à luz da Lua podem ser explicadas pelo habitat de forrageio, a dieta e distribuição espaço-temporal das plantas-alimento, e podem ter conseqüência para o sucesso reprodutivo das plantas-alimento. Os resultados do presente trabalho confirmam que a relação entre S. lilium e as solanáceas é muito forte, e que ela também é benéfica para ambos os grupos, afetando as populações de morcegos e plantas e consequentemente a estrutura de toda a comunidadeAbstract: Bats have a high ecological importance in the Neotropics for they are highly diverse, very abundant and interact with many plant and animal species. Phyllostomid bats of the subfamily Stenodermatinae are specialized frugivores and important seed dispersers, and Sturnira lilium prefers fruits of the Solanaceae, a family of high ecological and economical value. The goal of the present study was to investigate four main aspects and test hypotheses related to the way this interaction occurs and how it affects both groups. As expected, the diet of S. lilium was totally frugivore and Solanaceae prevailed. Bat abundance presented two short peaks throughout the year, while fruit production presented a single, but longer, peak. Bats left the area during colder months and probably migrated to lower and warmer altitudes to escape the severe climate and to search for Solanaceae fruits. Most S. lilium females reproduced during wetter and warmer months, during the highest fruit availability. The Solanaceae showed to be a reliable food source for S. lilium, and their phenology seemed to regulate bat population dynamics. S. lilium showed no roost fidelity, and used large commuting distances and foraging areas, if compared to other small mammals. Seed dispersal by S. lilium seemed to be highly beneficial for plants, according to the classical hypotheses of escape, colonization and limited dispersal. I observed no evidences of lunar phobia in S. lilium, despite having observed in other two frugivorous phyllostomids, Artibeus lituratus and Carollia perspicillata. Differences in response to moonlight may be explained by foraging habitat, diet and spatio-temporal distribution of food-plants, and may have consequences for the reproductive success of food-plants. Results of the present study suggest that the relationship between S. lilium and the Solanaceae is very strong, and that it is also beneficial for both groups, affecting populations of bats and plants, and consequently the structure of the whole communityDoutoradoDoutor em Ecologi

Keystone species in seed dispersal networks are mainly determined by dietary specialization

journal articleOne central issue in Ecology ecology has been the definition and identification of keystone species, i.e., species that are relatively more important than others for maintaining the structure of a community. Several keystone species concepts have been proposed, and network theory has been pointed out recently as a good theoretical framework for this kind of study. We used the network concept of centrality, measured in different ways, as a proxy for different aspects of a species relative importance in seed dispersal networks composed of either frugivorous bats or birds and their food-plants. Centrality was expected to be determined mainly by dietary specialization, and but also by body mass and geographic range size. In Across 15 Neotropical datasets, specialized frugivores were the only species to reach the highest values of centrality. Furthermore, the centrality of those specialized frugivores varied largely within and among networks, whereas that of secondary and opportunistic frugivores was consistently low. A multivariate model showed that centrality was best explained by dietary specialization, and but not by body mass or range size, and that the relationship between centrality and these ecological correlates differed between bat- and bird-fruit networks. Our findings suggest that dietary specialization is key to understand how keystone frugivores emerge in seed dispersal networks. This indicates that, and they also help predict part of the relative importance of a speciesplay a disproportional role for community structure and ecosystem functioningin a mutualistic community, which can be used as a tool in could be important forhas important implications for conservation or restoration programs

Do ensino remoto emergencial ao ensino híbrido no curso de Ciências Biológicas: a nossa visão a partir do Instituto de Biociências da Universidade de São Paulo (IB-USP)

A formação de biólogos baseia-se fortemente em um currículo presencial, incluindo inúmeras atividades práticas de laboratório e campo. Essa estrutura foi abruptamente abalada pela pandemia em 2020, forçando-nos a uma mudança para o ensino remoto emergencial (ERE). Sobrevivemos e nos adaptamos. Agora é hora de refletirmos com calma sobre a nossa prática docente. Que tal aproveitar o que aprendemos no calor da batalha e pensar em uma futura evolução do ERE para o ensino híbrido no curso de Ciências Biológicas do IB-USP? Assim como ocorre evolução biológica e cultural, é natural que a nossa prática docente e o processo de ensino-aprendizagem também evoluam. Cometemos erros e acertos, e as nossas experiências oferecem uma oportunidade de abraçar o processo de adaptação e evoluir. É importante ressaltar que o hibridismo em um curso de Ciências Biológicas, por definição, não envolve abolir experiências práticas presenciais que fomentem habilidades e competências fundamentais para a atuação profissional de biólogos. Não defendemos aqui uma migração integral para a educação a distância (EAD) ou os cursos abertos online em massa (MOOC), mas a incorporação de aprendizados e ferramentas obtidos durante o ERE. O ensino híbrido, além de valorizar significado e contexto, pode facilitar que cada aluno estabeleça o seu próprio ritmo de estudo. Ele permite ao estudante um papel ativo na aprendizagem autônoma e na exploração de novos conteúdos, dentro de limites de organização e prazos de aprendizado. Isso pode ainda aumentar o aproveitamento das atividades práticas de laboratório e campo, e de outras que são mais produtivas em modo presencial. O ensino híbrido, com boa parte do conteúdo passada de forma remota, torna a experiência de aprendizagem mais agradável e possibilita a construção do conhecimento de forma mais colaborativa, ativa e integrativa. É notório que estamos enfrentando um dos maiores desafios da nossa era. Felizmente, temos a oportunidade de unir as nossas experiências e aumentar a eficiência do processo ensino- aprendizagem, assim como promover uma maior inclusão e acolhimento nas nossas turmas.The training of biologists is strongly based on a face-to-face curriculum, including numerous hands-on laboratory and field activities. This structure was abruptly changed by the 2020 pandemic, forcing us to move to emergency remote teaching (ERT). We survived and adapted, and we can now seize the opportunity to reflect on our teaching practices. Howabout we take advantage of what we learned in the heart of the battle and think about adopting the blended learning approach in the course of Biological Sciences at IB-USP? Just as biological and cultural evolution occur; it is only natural that our teaching practices and the teaching-learning processes also evolve. We had hits and misses with ERT, and theseexperiences allowed us to embrace adaptation, transforming our teaching practices. Surely,adopting the blended learning approach in a biology course, by definition, does not involve abolishing hands-on activities that foster fundamental skills and competences of the professional biologist. Therefore, we do not advocate here for a full migration to distance education (DE) or massive open online courses (MOOC), but rather to the incorporation ofeducational technology tools, used during the ERT, within traditional place-based teaching methods. Crucially, blended learning has the potential to improve teaching practices in higher education courses. For example, it allows each student to become an autonomous learner where they can establish their own pace of study and take an active role in the exploration of new content. As a consequence, this can increase student performance in hands-on laboratory and field activities, and other activities that are more productive in person. In blended learning, most of the content is passed on remotely, making the learning experience more enjoyable and enabling the construction of knowledge in a more collaborative, active and integrated way. In summary, it is clear that we are facing one of the greatest challenges of our era but, fortunately, we have the opportunity to combine ourexperiences and improve our teaching practices, while promoting social acceptance and inclusive classrooms

Interindividual variations in fruit preferences of the yellow-shouldered bat Sturnira lilium (Chiroptera: Phyllostomidae) in a cafeteria experiment

In studies on frugivory and seed dispersal, it is frequently assumed that individual frugivores of the same population behave as equivalents. However, there is growing evidence from dietary studies pointing out that, in many natural populations, individuals use different subsets of the total resource pool. As heterogeneity in foraging behavior and food selection may affect the outcome of the seed dispersal process, we tested whether yellow-shouldered bats Sturnira lilium (E. Geoffroy St.-Hilaire, 1810), the key neotropical seed dispersers, show interindividual variations in fruit preferences. Thirty individuals were submitted to cafeteria trials in a flight tent, when they were offered fruits of Solanum variabile Mart. (Solanaceae) Cecropia pachystachya Trec. (Urticaceae), and Piper aduncum L. (Piperaceae), which belong to the favorite genera consumed by S. lilium. Although S. variabile had the highest consumption rates on average, there were variations among individuals in the fruits consumed in the second and third places. These findings, together with interindividual differences in foraging areas observed in the same population, may be interpreted as preliminary evidence of individual specialization. As a possible consequence, frugivorous bats of the same population, despite being all legitimate dispersers, may differ in their efficiency.Conselho Nacional de Desenvolvimento Científico e Tecnológico (CNPq)Fundação de Amparo à Pesquisa do Estado de São Paulo (FAPESP