Marine mammal tourism in the Bay of Plenty, New Zealand : effects, implications and management : a thesis submitted in partial fulfilment of the requirements for the degree of Doctor of Philosophy in Marine Ecology at Massey University, Albany, New Zealand

Worldwide expansion of marine mammal tourism over recent decades has raised international concerns in terms of the effects of these tourism practices on the species they target. Moreover, the growth and success of the industry have often outpaced conservation planning, including in New Zealand. To illustrate, tour vessels have been operating for ca. 25 years in the Bay of Plenty (BOP), situated on the east coast of North Island, New Zealand. By 2010, a total of eight permits had been granted across the region. However, development of this local industry occurred without any baseline data on species occurrence, distribution, habitat use or behaviour. This study sought to assess the historical occurrence of the marine mammal species off the BOP and determine their spatial and temporal distribution. Current distribution, density and group dynamics were examined for common dolphins (Delphinus sp.) and New Zealand fur seals (Arctocephalus forsteri), the two most frequently encountered species in the BOP and therefore, the primarily targeted species by tour operators. The extent of anthropogenic interactions with common dolphins was investigated and their effects on dolphin behaviour examined. The number of common dolphin individuals closely interacting with tour vessels was estimated and dolphin-vessel interactions were quantified to assess repetitive encounters. In the absence of previously undertaken systematic dedicated surveys, the present study investigated the historical spatial and temporal occurrence of dolphins, whales and pinnipeds in the BOP region. The examination of opportunistic data, collected between December 2000 and November 2010 via various platforms of opportunity including but not limited to tour vessels, identified fourteen species of dolphins, whales and pinnipeds occurring in the region. Confidence criteria in successful species identification were assigned based on observer expertise, diagnostic features of reported species and percentage of records reported by observer type. Common dolphins were the most frequently encountered species, followed by killer whales (Orcinus orca), bottlenose dolphins (Tursiops truncatus) and New Zealand fur seals, other species being infrequently encountered. A detailed examination of common dolphin habitat use revealed discrepancies with previous findings (e.g. higher use of shallower waters), possibly explained by inherent biases to the opportunistic dataset. Dedicated surveys, conducted between November 2010 and May 2013, investigated the current distribution, density and habitat use of common dolphins and New Zealand fur seals. Both species exhibited a strong seasonality with contrasting occurrence in summer and autumn for common dolphins and in winter and spring for fur seals. Dolphin seasonality is suggested to be linked to movements into deeper offshore waters and/or potentially to neighbouring regions (i.e. the Hauraki Gulf) and most likely related to foraging opportunities. Fur seal seasonality suggests that the western BOP supports a non-breeding colony and that foraging reasons may explain the species occurrence in the region. Higher density of common dolphins and fur seals identified over the shelf break and reefs can be explained by enhanced productivity. First application of Markov chain analyses to common dolphin within oceanic waters, allowed examination of the effects of tourism activities on common dolphins in the BOP. Dolphin foraging behaviour was significantly affected, as dolphins spent less time foraging during interactions with tour vessels and took longer to return to foraging once disrupted by vessel presence. Disruption to feeding may be particularly detrimental to common dolphins in the BOP open oceanic habitat, where prey resources are typically widely dispersed and unpredictable. While the overall level of tour operator compliance with regulations in the bay was relatively high, non-compliance was recorded with regards to swimming with calves and extended time interacting with dolphins. Evidence of repetitive interactions between tour vessels and common dolphins were examined using photo-identification to assess potential cumulative impacts. An estimated minimum of 1,278 common dolphin individuals were identified in the region, for which the majority (86.9%) showed low levels of site fidelity (i.e. only one encounter). At least 61.7% of identified dolphins were exposed to tour vessel interactions. However, spatial (i.e. between the western and eastern sub-regions) and temporal (i.e. daily, seasonal and annual) cumulative exposure to tourism activities was observed for less than 10% of these individuals. This is likely explained by tour operators “handing over” groups or returning to areas preferentially frequented by dolphins (i.e. presumed foraging hotspots). Due to the opportunistic methods used for photo-identification, these results are indicative only of the absolute minimum of repeated interactions common dolphins may face in the region. The present thesis represents the first comprehensive assessment of marine mammal tourism in the BOP. It offers important contributions to research and conservation in this area via the critical assessment of historical occurrence of marine mammals in the region. This thesis also provides comprehensive and detailed insights into common dolphin and New Zealand fur seal temporal and spatial distribution in the area. This can serve management agencies to implement efficient conservation plans. While identifying that tourism operations significantly affect common dolphin behaviour and repetitive interactions result in cumulative exposure, this thesis supports adaptive management and further long-term monitoring of marine mammal species in general, and in the BOP region more specifically

Behavioural effects of tourism on oceanic common dolphins, Delphinus sp., in New Zealand: the effects of Markov analysis variations and current tour operator compliance with regulations

Common dolphins, Delphinus sp., are one of the marine mammal species tourism operations in New Zealand focus on. While effects of cetacean-watching activities have previously been examined in coastal regions in New Zealand, this study is the first to investigate effects of commercial tourism and recreational vessels on common dolphins in an open oceanic habitat. Observations from both an independent research vessel and aboard commercial tour vessels operating off the central and east coast Bay of Plenty, North Island, New Zealand were used to assess dolphin behaviour and record the level of compliance by permitted commercial tour operators and private recreational vessels with New Zealand regulations. Dolphin behaviour was assessed using two different approaches to Markov chain analysis in order to examine variation of responses of dolphins to vessels. Results showed that, regardless of the variance in Markov methods, dolphin foraging behaviour was significantly altered by boat interactions. Dolphins spent less time foraging during interactions and took significantly longer to return to foraging once disrupted by vessel presence. This research raises concerns about the potential disruption to feeding, a biologically critical behaviour. This may be particularly important in an open oceanic habitat, where prey resources are typically widely dispersed and unpredictable in abundance. Furthermore, because tourism in this region focuses on common dolphins transiting between adjacent coastal locations, the potential for cumulative effects could exacerbate the local effects demonstrated in this study. While the overall level of compliance by commercial operators was relatively high, non-compliance to the regulations was observed with time restriction, number or speed of vessels interacting with dolphins not being respected. Additionally, prohibited swimming with calves did occur. The effects shown in this study should be carefully considered within conservation management plans, in order to reduce the risk of detrimental effects on common dolphins within the region

Microdevices for extensional rheometry of low viscosity elastic liquids : a review

Extensional flows and the underlying stability/instability mechanisms are of extreme relevance to the efficient operation of inkjet printing, coating processes and drug delivery systems, as well as for the generation of micro droplets. The development of an extensional rheometer to characterize the extensional properties of low viscosity fluids has therefore stimulated great interest of researchers, particularly in the last decade. Microfluidics has proven to be an extraordinary working platform and different configurations of potential extensional microrheometers have been proposed. In this review, we present an overview of several successful designs, together with a critical assessment of their capabilities and limitations

High Target Homology Does Not Guarantee Inhibition: Aminothiazoles Emerge as Inhibitors of Plasmodium falciparum

In this study, we identified three novel compound classes with potent activity against Plasmodium falciparum, the most dangerous human malarial parasite. Resistance of this pathogen to known drugs is increasing, and compounds with different modes of action are urgently needed. One promising drug target is the enzyme 1-deoxy-d-xylulose-5-phosphate synthase (DXPS) of the methylerythritol 4-phosphate (MEP) pathway for which we have previously identified three active compound classes against Mycobacterium tuberculosis. The close structural similarities of the active sites of the DXPS enzymes of P. falciparum and M. tuberculosis prompted investigation of their antiparasitic action, all classes display good cell-based activity. Through structure-activity relationship studies, we increased their antimalarial potency and two classes also show good metabolic stability and low toxicity against human liver cells. The most active compound 1 inhibits the growth of blood-stage P. falciparum with an IC50 of 600 nM. The results from three different methods for target validation of compound 1 suggest no engagement of DXPS. All inhibitor classes are active against chloroquine-resistant strains, confirming a new mode of action that has to be further investigated

High Target Homology Does Not Guarantee Inhibition: Aminothiazoles Emerge as Inhibitors of \u3ci\u3ePlasmodium falciparum\u3c/i\u3e

In this study, we identified three novel compound classes with potent activity against Plasmodium falciparum, the most dangerous human malarial parasite. Resistance of this pathogen to known drugs is increasing, and compounds with different modes of action are urgently needed. One promising drug target is the enzyme 1-deoxy-D-xylulose-5- phosphate synthase (DXPS) of the methylerythritol 4-phosphate (MEP) pathway for which we have previously identified three active compound classes against Mycobacterium tuberculosis. The close structural similarities of the active sites of the DXPS enzymes of P. falciparum and M. tuberculosis prompted investigation of their antiparasitic action, all classes display good cell-based activity. Through structure−activity relationship studies, we increased their antimalarial potency and two classes also show good metabolic stability and low toxicity against human liver cells. The most active compound 1 inhibits the growth of blood-stage P. falciparum with an IC50 of 600 nM. The results from three different methods for target validation of compound 1 suggest no engagement of DXPS. All inhibitor classes are active against chloroquine-resistant strains, confirming a new mode of action that has to be further investigated

Connections of climate change and variability to large and extreme forest fires in southeast Australia

The 2019/20 Black Summer bushfire disaster in southeast Australia was unprecedented: the extensive area of forest burnt, the radiative power of the fires, and the extraordinary number of fires that developed into extreme pyroconvective events were all unmatched in the historical record. Australia’s hottest and driest year on record, 2019, was characterised by exceptionally dry fuel loads that primed the landscape to burn when exposed to dangerous fire weather and ignition. The combination of climate variability and long-term climate trends generated the climate extremes experienced in 2019, and the compounding effects of two or more modes of climate variability in their fire-promoting phases (as occurred in 2019) has historically increased the chances of large forest fires occurring in southeast Australia. Palaeoclimate evidence also demonstrates that fire-promoting phases of tropical Pacific and Indian ocean variability are now unusually frequent compared with natural variability in preindustrial times. Indicators of forest fire danger in southeast Australia have already emerged outside of the range of historical experience, suggesting that projections made more than a decade ago that increases in climate-driven fire risk would be detectable by 2020, have indeed eventuated. The multiple climate change contributors to fire risk in southeast Australia, as well as the observed non-linear escalation of fire extent and intensity, raise the likelihood that fire events may continue to rapidly intensify in the future. Improving local and national adaptation measures while also pursuing ambitious global climate change mitigation efforts would provide the best strategy for limiting further increases in fire risk in southeast Australia

Domain Organization of Long Signal Peptides of Single-Pass Integral Membrane Proteins Reveals Multiple Functional Capacity

Targeting signals direct proteins to their extra - or intracellular destination such as the plasma membrane or cellular organelles. Here we investigated the structure and function of exceptionally long signal peptides encompassing at least 40 amino acid residues. We discovered a two-domain organization (“NtraC model”) in many long signals from vertebrate precursor proteins. Accordingly, long signal peptides may contain an N-terminal domain (N-domain) and a C-terminal domain (C-domain) with different signal or targeting capabilities, separable by a presumably turn-rich transition area (tra). Individual domain functions were probed by cellular targeting experiments with fusion proteins containing parts of the long signal peptide of human membrane protein shrew-1 and secreted alkaline phosphatase as a reporter protein. As predicted, the N-domain of the fusion protein alone was shown to act as a mitochondrial targeting signal, whereas the C-domain alone functions as an export signal. Selective disruption of the transition area in the signal peptide impairs the export efficiency of the reporter protein. Altogether, the results of cellular targeting studies provide a proof-of-principle for our NtraC model and highlight the particular functional importance of the predicted transition area, which critically affects the rate of protein export. In conclusion, the NtraC approach enables the systematic detection and prediction of cryptic targeting signals present in one coherent sequence, and provides a structurally motivated basis for decoding the functional complexity of long protein targeting signals

Care of Late-Stage Parkinsonism: Resource Utilization of the Disease in Five European Countries

BACKGROUND: Parkinson's disease (PD) is a neurodegenerative disease that leads to progressive disability. Cost studies have mainly explored the early stages of the disease, whereas late-stage patients are underrepresented. OBJECTIVE: The aim is to evaluate the resource utilization and costs of PD management in people with late-stage disease. METHODS: The Care of Late-Stage Parkinsonism (CLaSP) study collected economic data from patients with late-stage PD and their caregivers in five European countries (France, Germany, the Netherlands, UK, Sweden) in a range of different settings. Patients were eligible to be included if they were in Hoehn and Yahr stage >3 in the on state or Schwab and England stage at 50% or less. In total, 592 patients met the inclusion criteria and provided information on their resource utilization. Costs were calculated from a societal perspective for a 3-month period. A least absolute shrinkage and selection operator approach was utilized to identify the most influential independent variables for explaining and predicting costs. RESULTS: During the 3-month period, the costs were €20,573 (France), €19,959 (Germany), €18,319 (the Netherlands), €25,649 (Sweden), and €12,156 (UK). The main contributors across sites were formal care, hospitalization, and informal care. Gender, age, duration of the disease, Unified Parkinson's Disease Rating Scale 2, the EQ-5D-3L, and the Schwab and England Scale were identified as predictors of costs. CONCLUSION: Costs in this cohort of individuals with late-stage PD were substantially higher compared to previously published data on individuals living in earlier stages of the disease. Resource utilization in the individual sites differed in part considerably among these three parameters mentioned. © 2024 The Authors. Movement Disorders published by Wiley Periodicals LLC on behalf of International Parkinson and Movement Disorder Society

Influence of the Escherichia coli oxyR gene function on λ prophage maintenance

In Escherichia coli hosts, hydrogen peroxide is one of the factors that may cause induction of λ prophage. Here, we demonstrate that H2O2-mediated λ prophage induction is significantly enhanced in the oxyR mutant host. The mRNA levels for cI gene expression were increased in a λ lysogen in the presence of H2O2. On the other hand, stimulation of the pM promoter by cI857 overproduced from a multicopy plasmid was decreased in the ΔoxyR mutant in the presence of H2O2 but not under normal growth conditions. The purified OxyR protein did bind specifically to the pM promoter region. This binding impaired efficiency of interaction of the cI protein with the OR3 site, while stimulating such a binding to OR2 and OR1 sites, in the regulatory region of the pM promoter. We propose that changes in cI gene expression, perhaps in combination with moderately induced SOS response, may be responsible for enhanced λ prophage induction by hydrogen peroxide in the oxyR mutant. Therefore, OxyR seems to be a factor stimulating λ prophage maintenance under conditions of oxidative stress. This proposal is discussed in the light of efficiency of induction of lambdoid prophages bearing genes coding for Shiga toxins

Fertility preservation for male patients with childhood, adolescent, and young adult cancer:recommendations from the PanCareLIFE Consortium and the International Late Effects of Childhood Cancer Guideline Harmonization Group

Item does not contain fulltextMale patients with childhood, adolescent, and young adult cancer are at an increased risk for infertility if their treatment adversely affects reproductive organ function. Future fertility is a primary concern of patients and their families. Variations in clinical practice are barriers to the timely implementation of interventions that preserve fertility. As part of the PanCareLIFE Consortium, in collaboration with the International Late Effects of Childhood Cancer Guideline Harmonization Group, we reviewed the current literature and developed a clinical practice guideline for fertility preservation in male patients who are diagnosed with childhood, adolescent, and young adult cancer at age 25 years or younger, including guidance on risk assessment and available methods for fertility preservation. The Grading of Recommendations Assessment, Development and Evaluation methodology was used to grade the available evidence and to form the recommendations. Recognising the need for global consensus, this clinical practice guideline used existing evidence and international expertise to rigorously develop transparent recommendations that are easy to use to facilitate the care of male patients with childhood, adolescent, and young adult cancer who are at high risk of fertility impairment and to enhance their quality of life