The initial tolerance to sub-lethal Cd exposure is the same among ten naïve pond populations of Daphnia magna, but their micro-evolutionary potential to develop resistance is very different

A

The bacterioplankton community composition and a host genotype dependent occurrence of taxa shape the Daphnia magna gut bacterial community

The assembly of host-associated bacterial communities is influenced by a multitude of biotic and abiotic factors. It is essential to gain insight in the impact and relative strength of these factors if we want to be able to predict the effects of environmental change on the assembly of host-associated bacterial communities, or deliberately modify them. The environmental pool of bacteria, from which the host is colonized, and the genetic background of the host are both considered to be important in determining the composition of host-associated bacterial communities. We experimentally assessed the relative importance of these two factors and their interaction on the composition of Daphnia magna gut bacterial communities. Bacterioplankton originating from natural ponds or a laboratory culture were used to inoculate germ-free Daphnia of different genotypes. We found that the composition of the environmental bacterial community has a major influence on the Daphnia gut bacterial community, both reflected by the presence or absence of specific taxa as well as by a correlation between abundances in the environment and on the host. Our data also indicate a consistent effect of host genotype on the occurrence of specific bacterial taxa in the gut of Daphnia over different environments

Single nucleotide polymorphism discovery from expressed sequence tags in the waterflea Daphnia magna

<p>Abstract</p> <p>Background</p> <p><it>Daphnia </it>(Crustacea: Cladocera) plays a central role in standing aquatic ecosystems, has a well known ecology and is widely used in population studies and environmental risk assessments. <it>Daphnia magna </it>is, especially in Europe, intensively used to study stress responses of natural populations to pollutants, climate change, and antagonistic interactions with predators and parasites, which have all been demonstrated to induce micro-evolutionary and adaptive responses. Although its ecology and evolutionary biology is intensively studied, little is known on the functional genomics underpinning of phenotypic responses to environmental stressors. The aim of the present study was to find genes expressed in presence of environmental stressors, and target such genes for single nucleotide polymorphic (SNP) marker development.</p> <p>Results</p> <p>We developed three expressed sequence tag (EST) libraries using clonal lineages of <it>D. magna </it>exposed to ecological stressors, namely fish predation, parasite infection and pesticide exposure. We used these newly developed ESTs and other <it>Daphnia </it>ESTs retrieved from NCBI GeneBank to mine for SNP markers targeting synonymous as well as non synonymous genetic variation. We validate the developed SNPs in six natural populations of <it>D. magna </it>distributed at regional scale.</p> <p>Conclusions</p> <p>A large proportion (47%) of the produced ESTs are <it>Daphnia </it>lineage specific genes, which are potentially involved in responses to environmental stress rather than to general cellular functions and metabolic activities, or reflect the arthropod's aquatic lifestyle. The characterization of genes expressed under stress and the validation of their SNPs for population genetic study is important for identifying ecologically responsive genes in <it>D. magna</it>.</p

Local genetic adaptation to grazing pressure of the green alga Desmodesmus armatus in a strongly connected pond system

Dispersal potentially homogenizes genetic variation among populations and thus may prevent local genetic adaptation. If selection gradients are strong and the selection response efficient, however, local genetic adaptation may persist in the face of high dispersal rates. We compared grazing-resistance traits among populations of the green microalga Desmodesmus armatus, which inhabit ponds that are ecologically different but part of a strongly interconnected pond system. Desmodesmus clones were isolated from a clear-water and a turbid pond. For 16 clones from an internal transcribed spacer 2 clade with low sequence variation (1.3%) corresponding morphologically to D. armatus, coenobial dimensions and the average number of cells per coenobium, in both the absence and the presence of water conditioned by their main grazer, the waterflea Daphnia, were determined. Clones from the clear-water pond had four-celled coenobia with a higher greatest axial linear dimension and an increased average number of cells per coenobium in response to Daphnia kairomone, contrary to clones from the turbid pond. Unexpectedly, they were also characterized by a lower average number of cells per coenobium. No differences among populations were detected for cell length. Genetic variation was present in both populations for all traits, except for the response to kairomone. Continuous dispersal through overflows and rivulets in this pond system is thus incapable of preventing strong among-population genetic differentiation for ecological relevant traits, testifying both to the capacity of phytoplankton populations to adapt to local conditions and to the importance of grazing as a structuring factor in natural phytoplankton populations

Evolution of pesticide tolerance and associated changes in the microbiome in the water flea Daphnia magna

Exposure to pesticides can have detrimental effects on aquatic communities of non-target species. Populations can evolve tolerance to pesticides which may rescue them from extinction. However, the evolution of tolerance does not always occur and insights in the underlying mechanisms are scarce. One understudied mechanism to obtain pesticide tolerance in hosts are shifts toward pesticide-degrading bacteria in their microbiome. We carried out experimental evolution trials where replicated experimental populations of the water flea Daphnia magna were exposed to the pesticide chlorpyrifos or a solvent control, after which we performed acute toxicity assays to evaluate the evolution of chlorpyrifos tolerance. Additionally, we quantified changes in the microbiota community composition of whole body and gut samples to assess which sample type best reflected the pesticide tolerance of the Daphnia host. As expected, chlorpyrifos-selected clones became more tolerant to chlorpyrifos as shown by the higher EC50 48 h (36% higher) compared with the control clones. This was associated with shifts in the microbiome composition whereby the abundance of known organophosphate-degrading bacterial genera increased on average ~4 times in the chlorpyrifos-selected clones. Moreover, the abundances of several genera, including the organophosphate-degrading bacteria Pseudomonas, Flavobacterium and Bacillus, were positively correlated with the EC50 48 h of the host populations. These shifts in bacterial genera were similar in magnitude in whole body and gut samples, yet the total abundance of organophosphate-degrading bacteria was ~6 times higher in the whole body samples, suggesting that the gut is not the only body part where pesticide degradation by the microbiome occurs. Our results indicate that the microbiome is an important mediator of the development of tolerance to pesticides in Daphnia

The effect of temperature and predation on performance in monoculture and in competition in three Daphniidae differing in body size

Zooplankton body size shows a strong association with temperature, competition, and predation. Global warming affects all three drivers of body size and is thus expected to lead to substantial changes in zooplankton community composition and body size distributions. To disentangle the isolated and joint effect of temperature, competition, and fish predation on species biomass and community composition in zooplankton, we monitored population biomasses of three Daphniidae species that differ in body size (Daphnia magna, Daphnia pulex, and Ceriodaphnia reticulata) for 20 days, manipulating competition (monoculture, pairwise trials, and three-species communities), temperature (20°C, 24°C, and 28°C) and presence or absence of fish predation. In the absence of predation, D. magna dominated in all competition experiments, even at high temperatures. D. magna went extinct, however, in the predation treatments at 24°C and 28°C. D. pulex outcompeted C. reticulata and was negatively affected by predation and high temperature. C. reticulata did not reduce biomass at high temperatures and was negatively affected by all competition trials, but was positively affected by predation. Our results indicate that the two larger-bodied species are more negatively affected by the combination of temperature and predation than the smallest species. While higher temperatures reduced the biomass of the larger-bodied species, it did not fundamentally change their ability to dominate over the smallest species in competition. The combined effect of warming and predation changed community composition more fundamentally, resulting in the dominance of small-bodied species. This can have important ecosystem-wide impacts, such as the transition to turbid, algae-dominated systems