Methods of extracting antigens from the enteric bacteria

Thesis (M.A.)--Boston UniversityThis investigation was conducted in order to determine the most efficient manner in which the "enteric bacteria" could be released for testing by the Ouchterlony technic. These results may prove useful in comparing the agar-gel precipitation technic with the usual agglutination technic for the typing of enteric bacteria. The organisms used were S. typhosa, strain Ty2; S. typhosa, strain 0-901; Sh. flexneri, type lb; Sh. flexneri, type 3; E. coli; Proteus species; and S. paratyphi B. Six different types of antigenic extract were prepared from these organisms when agar-grown. These extracts were saline, heated saline, trypsin, trichloroacetic acid, alumina, and sonic extracts. Concentrations of the antigenic extracts ranged from 0.1 to 50 mg/ml. Aging of the antigenic extracts for periods of up to and including three weeks was tried. Whole cultures, either living or after killing with phenol, merthiolate, formalin or heat, were tested. Antisera were prepared by immunizing rabbits with saline suspensions of acetone-dried organisms [TRUNCATED

Source-age dynamics of estuarine particulate organic matter using fatty acid delta C-13 and Delta C-14 composition

This study used a multiproxy approach to elucidate the source and age composition of estuarine particulate organic matter (POM) using bulk stable isotopes (C-13(POC)), fatty acid (FA) biomarkers, and compound specific isotopic analyses in surface waters along the Delaware River and Bay (Delaware Estuary, hereafter). C-13 values of FA (C-13(FA)) ranged more widely (-30.9 parts per thousand to -21.8 parts per thousand) than C-13(POC) (-27.5 parts per thousand to -23.5 parts per thousand), providing greater insight about POM sources along the estuary. C-13 values of C-16:0 phospholipid FA (primarily, aquatic sources) increased along the salinity gradient (-29.8 parts per thousand to -23.4 parts per thousand), while C-13(FA) values of long-chain neutral fatty acid (terrestrial sources) decreased (-28.6 parts per thousand to -30.9 parts per thousand). C-13(FA) values for C-18\u27s FA indicated the importance of marsh-derived organic matter within Delaware Estuary. Compound specific radiocarbon analysis showed the heterogeneous age structure of FA associated with POM (FA(POM)). C-14 ages of FA ranged from modern (postbomb) to 1790BP; aged FA (120BP to 1700BP) derived primarily from the watershed, whereas modern FA were produced within Delaware Estuary. C-14 ages of short-chain FA (aquatic sources) reflected differences in the age of dissolved inorganic carbon along the estuary and had older C-14 ages at the river end-member. C-14 ages of FA from terrigenous sources were older than water and sediment residence times indicating this source derived from the watershed. This study is the first to document the complex age distribution of FA(POM) along the estuarine salinity gradient and shows that inorganic carbon sources, watershed inputs and autochthonous production contribute to variation in the ages of POM

Changes in Oceanic Radiocarbon and CFCs Since the 1990s

Anthropogenic perturbations from fossil fuel burning, nuclear bomb testing, and chlorofluorocarbon (CFC) use have created useful transient tracers of ocean circulation. The atmospheric 14C/C ratio (∆14C) peaked in the early 1960s and has decreased now to pre‐industrial levels, while atmospheric CFC‐11 and CFC‐12 concentrations peaked in the early 1990s and early 2000s, respectively, and have now decreased by 10%–20%. We present the first analysis of a decade of new observations (2007 to 2018–2019) and give a comprehensive overview of the changes in ocean ∆14C and CFC concentration since the WOCE surveys in the 1990s. Surface ocean ∆14C decreased at a nearly constant rate from the 1990–2010s (20‰/decade). In most of the surface ocean ∆14C is higher than in atmospheric CO2 while in the interior ocean, only a few places are found to have increases in ∆14C, indicating that globally, oceanic bomb 14C uptake has stopped and reversed. Decreases in surface ocean CFC‐11 started between the 1990 and 2000s, and CFC‐12 between the 2000–2010s. Strong coherence in model biases of decadal changes in all tracers in the Southern Ocean suggest ventilation of Antarctic Intermediate Water was enhanced from the 1990 to the 2000s, whereas ventilation of Subantarctic Mode Water was enhanced from the 2000 to the 2010s. The decrease in surface tracers globally between the 2000 and 2010s is consistently stronger in observations than in models, indicating a reduction in vertical transport and mixing due to stratification

Radiocarbon content of dissolved organic carbon in the South Indian Ocean

Author Posting. © American Geophysical Union, 2018. This article is posted here by permission of American Geophysical Union for personal use, not for redistribution. The definitive version was published in Geophysical Research Letters 45 (2018): 872–879, doi:10.1002/2017GL076295.We report four profiles of the radiocarbon content of dissolved organic carbon (DOC) spanning the South Indian Ocean (SIO), ranging from the Polar Front (56°S) to the subtropics (29°S). Surface waters held mean DOC Δ14C values of −426 ± 6‰ (~4,400 14C years) at the Polar Front and DOC Δ14C values of −252 ± 22‰ (~2,000 14C years) in the subtropics. At depth, Circumpolar Deep Waters held DOC Δ14C values of −491 ± 13‰ (~5,400 years), while values in Indian Deep Water were more depleted, holding DOC Δ14C values of −503 ± 8‰ (~5,600 14C years). High-salinity North Atlantic Deep Water intruding into the deep SIO had a distinctly less depleted DOC Δ14C value of −481 ± 8‰ (~5,100 14C years). We use multiple linear regression to assess the dynamics of DOC Δ14C values in the deep Indian Ocean, finding that their distribution is characteristic of water masses in that region.National Science Foundation (NSF) Grant Numbers: OPP-1142117, OCE-14367482018-07-2

Carbon isotopic evidence for microbial control of carbon supply to Orca Basin at the seawater–brine interface

© The Author(s), 2013. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biogeosciences 10 (2013): 3175-3183, doi:10.5194/bg-10-3175-2013.Orca Basin, an intraslope basin on the Texas-Louisiana continental slope, hosts a hypersaline, anoxic brine in its lowermost 200 m in which limited microbial activity has been reported. This brine contains a large reservoir of reduced and aged carbon, and appears to be stable at decadal time scales: concentrations and isotopic composition of dissolved inorganic (DIC) and organic carbon (DOC) are similar to measurements made in the 1970s. Both DIC and DOC are more "aged" within the brine pool than in overlying water, and the isotopic contrast between brine carbon and seawater carbon is much greater for DIC than DOC. While the stable carbon isotopic composition of brine DIC points towards a combination of methane and organic carbon remineralization as its source, radiocarbon and box model results point to the brine interface as the major source region for DIC, allowing for only limited oxidation of methane diffusing upwards from sediments. This conclusion is consistent with previous studies that identify the seawater–brine interface as the focus of microbial activity associated with Orca Basin brine. Isotopic similarities between DIC and DOC suggest a different relationship between these two carbon reservoirs than is typically observed in deep ocean basins. Radiocarbon values implicate the seawater–brine interface region as the likely source region for DOC to the brine as well as DIC.This work was funded by the WHOI Postdoctoral Scholar program, NSF Cooperative Agreement for the Operation of a National Ocean Sciences Accelerator Mass Spectrometry Facility (OCE-0753487), and the US National Science Foundation’s Emerging Frontiers program (award 0801741 to SBJ)

Carbon dynamics in the western Arctic Ocean : insights from full-depth carbon isotope profiles of DIC, DOC, and POC

© The Author(s), 2012. This article is distributed under the terms of the Creative Commons Attribution License. The definitive version was published in Biogeosciences 9 (2012): 1217-1224, doi:10.5194/bg-9-1217-2012.Arctic warming is projected to continue throughout the coming century. Yet, our currently limited understanding of the Arctic Ocean carbon cycle hinders our ability to predict how changing conditions will affect local Arctic ecosystems, regional carbon budgets, and global climate. We present here the first set of concurrent, full-depth, dual-isotope profiles for dissolved inorganic carbon (DIC), dissolved organic carbon (DOC), and suspended particulate organic carbon (POCsusp) at two sites in the Canada Basin of the Arctic Ocean. The carbon isotope composition of sinking and suspended POC in the Arctic contrasts strongly with open ocean Atlantic and Pacific sites, pointing to a combination of inputs to Arctic POCsusp at depth, including surface-derived organic carbon (OC), sorbed/advected OC, and OC derived from in situ DIC fixation. The latter process appears to be particularly important at intermediate depths, where mass balance calculations suggest that OC derived from in situ DIC fixation contributes up to 22% of POCsusp. As in other oceans, surface-derived OC is still a dominant source to Arctic POCsusp. Yet, we suggest that significantly smaller vertical POC fluxes in the Canada Basin make it possible to see evidence of DIC fixation in the POCsusp pool even at the bulk isotope level.The 2008 JOIS hydrographic program was supported by Fisheries and Oceans Canada, the Canadian International Polar Year Office, and the US National Science Foundation (OPP-0424864; lead-PI Andrey Proshutinsky)

Effectiveness of interventions to support the early detection of skin cancer through skin self-examination: a systematic review and meta-analysis.

BACKGROUND: As skin cancer incidence rises, there is a need to evaluate early detection interventions by the public using skin self-examination (SSE); however, the literature focuses on primary prevention. No systematic reviews have evaluated the effectiveness of such SSE interventions. OBJECTIVES: To systematically examine, map, appraise and synthesize, qualitatively and quantitatively, studies evaluating the early detection of skin cancer, using SSE interventions. METHODS: This is a systematic review (narrative synthesis and meta-analysis) examining randomized controlled trials (RCTs) and quasiexperimental, observational and qualitative studies, published in English, using PRISMA and National Institute for Health and Care Excellence guidance. The MEDLINE, Embase and PsycINFO databases were searched through to April 2015 (updated in April 2018 using MEDLINE). Risk-of-bias assessment was conducted. RESULTS: Included studies (n = 18), totalling 6836 participants, were derived from 22 papers; these included 12 RCTs and five quasiexperiments and one complex-intervention development. More studies (n = 10) focused on targeting high-risk groups (surveillance) than those at no higher risk (screening) (n = 8). Ten (45%) study interventions were theoretically underpinned. All of the study outcomes were self-reported, behaviour related and nonclinical in nature. Meta-analysis demonstrated the impact of the intervention on the degree of SSE activity from five studies, especially in the short term (up to 4 months) (odds ratio 2·31, 95% confidence interval 1·90-2·82), but with small effect sizes. Risk-of-bias assessment indicated that 61% of the studies (n = 11) were of weak quality. CONCLUSIONS: Four RCTs and a quasiexperimental study indicate that some interventions can enhance SSE activity and so are more likely to aid early detection of skin cancer. However, the actual clinical impact remains unclear, and this is based on overall weak study (evidence) quality

Age and growth rate dynamics of an old African baobab determined by radiocarbon dating

Author Posting. © Arizona Board of Regents on behalf of the University of Arizona, 2010. This article is posted here by permission of Dept. of Geosciences, University of Arizona for personal use, not for redistribution. The definitive version was published in Radiocarbon 52 (2010): 727-734.In 2008, a large African baobab (Adansonia digitata L.) from Makulu Makete, South Africa, split vertically into 2 sections, revealing a large enclosed cavity. Several wood samples collected from the cavity were processed and radiocarbon dated by accelerator mass spectrometry (AMS) for determining the age and growth rate dynamics of the tree. The 14C date of the oldest sample was found to be of 1016 ± 22 BP, which corresponds to a calibrated age of 1000 ± 15 yr. Thus, the Makulu Makete tree, which eventually collapsed to the ground and died, becomes the second oldest African baobab dated accurately to at least 1000 yr. The conventional growth rate of the trunk, estimated by the radial increase, declined gradually over its life cycle. However, the growth rate expressed more adequately by the cross-sectional area increase and by the volume increase accelerated up to the age of 650 yr and remained almost constant over the past 450 yr.This material is based on work supported by a grant from the Romanian National University Research Council (PN II - IDEI 2354 Nr. 1092) and by US National Science Foundation under Cooperative Agreement OCE-022828996

A patient-led approach to product innovation in patient education and wound management

This paper reports results from a multi-disciplinary industry-academia research partnership whose goal was to conceive, design and prototype solutions for older adults with chronic wounds. Aim: The aim of the project was to explore the potential enhanced benefits of extended patient involvement in an entire live product development process, from understanding the wound care environment, through needs identification, to solution generation and iteration. Methods: An action-design research methodology was used to engage with 47 target users and develop design ideas and prototypes. The research was built around a theoretical framework that integrates aspirations and needs of target users with socio-technical systems thinking and innovation management processes. Results: The design component of the research methodology resulted in the concept design of a wound management education and information system for use by patients and their caregivers. This concept was developed based on observations of and interaction with patients and caregivers. A prototype solution was built and used as a vehicle to gain an understanding of opportunities, issues, and challenges to be addressed in supporting older adults with chronic wounds and enabling them to maintain and improve their personal wellbeing. This led to the identification of the need for readily available, current wound care information, advice, and support for older people and caregivers. The design concept was a response to this need. From early evaluations of a prototype implementation, age was identified as not necessarily being a barrier to the use of a technology-based solution; IT skills, confidence, and access to the internet were identified as more important factors. Outcomes: A prototypical wound care information system was developed that has been evaluated with target users using deliberative panels and home-based evaluations of a prototype implemented on a tablet platform. Wound care solutions focussed on the need to support people in maintaining their personal wellbeing lead to different requirements from those that support wound treatment. By considering wider perspectives, solution providers have opportunities to utilise fewer or re-allocate resources whilst improving user wellbeing by creating user-focussed outcomes that are effective, efficient, and valued by both patient and provider

Significance of perylene for source allocation of terrigenous organic matter in aquatic sediments.

Author Posting. © American Chemical Society, 2019. This is an open access article published under an ACS AuthorChoice License. The definitive version was published in Environmental Science and Technology 53(14), (2019):8244-8251, doi:10.1021/acs.est.9b02344.Perylene is a frequently abundant, and sometimes the only polycyclic aromatic hydrocarbon (PAH) in aquatic sediments, but its origin has been subject of a longstanding debate in geochemical research and pollutant forensics because its historical record differs markedly from typical anthropogenic PAHs. Here we investigate whether perylene serves as a source-specific molecular marker of fungal activity in forest soils. We use a well-characterized sedimentary record (1735 to 1999) from the anoxic-bottom waters of the Pettaquamscutt River basin, RI, USA to examine mass accumulation rates and isotope records of perylene, and compare them with total organic carbon and the anthropogenic PAH fluoranthene. We support our arguments with radiocarbon (14C) data of higher plant leaf-wax n-alkanoic acids. Isotope-mass balance calculations of perylene and n-alkanoic acids indicate that ~40 % of sedimentary organic matter is of terrestrial origin. Further, both terrestrial markers are pre-aged on millennial time-scales prior to burial in sediments and insensitive to elevated 14C concentrations following nuclear weapons testing in the mid-20th Century. Instead, changes coincide with enhanced erosional flux during urban sprawl. These findings suggest that perylene is definitely a product of soil derived fungi, and a powerful chemical tracer to study spatial and temporal connectivity between terrestrial and aquatic environments.We thank John King, Sean Sylva, Brad Hubeny, Peter Sauer, and Jim Broda for their help in sampling; Carl Johnson and Daniel Montluçon for their incessant help with analyses; as well as Mark Yunker for critical discussion on the perils of perylene. Professor Phil Meyers and two anonymous reviewers provided comments that improved the quality of the manuscript. U.M.H. acknowledges the Swiss National Science Foundation for his postdoctoral fellowship and T.I.E. and K.A.H. acknowledges the NSF for research grants CHE-0089172 and OCE-9708478.2020-06-1