Computer‐aided photo‐identification of a rare stingray, Megatrygon microps

We have defined protocol for photo‐identification to identify individual Megatrygon microps. 104 identification photographs were taken between 2005 and 2019. Spot patterns on the dorsal surface were used to identify individuals. Unique scarring on 8 re‐observed M. microps provided an independent confirmation of pattern stability of up to 761 days. Previously, studies have lacked statistical testing to validate photo‐identification approach. The I3S photo‐matching software was proven to successfully match images, identifying 69 individuals. A photo‐matching software facilitates an open‐source platform for identifying individual M. microps, allowing for better population assessments

Assessing efficacies of insect pest management methods to preserve nutritional composition of bagged maize in storehouses located in markets in Nigeria

Maize needs to be stored using effective and safe postharvest management measures to prevent physical insect damage as well as ensure stability of nutritional quality during storage. In this study, conducted in February–December 2016, insect pest management methods for bagged maize preservation in storehouses located in markets in Nigeria were evaluated for their ability to preserve nutritional quality. Study locations were inthree grain markets, namely Eleekara market in Oyo town and Arisekola market in Ibadan, Oyo State, South West Nigeria, and Ago market in Ilorin, Kwara State, North Central Nigeria. Treatments comprised Piper guineense (Botanical), Bularafa diatomaceous earth (DE), permethrin powder (Rambo™) (Permethrin), PICS bags (hermetic) and ZeroFly® bags (non-hermetic). The study also had negative control (Control) comprising untreated maize in polypropylene bags. In general, as a result of insect infestation, protein content increased in all treatments except PICS which had the least infestation. After 11 months of storage, Permethrin and PICS treatments had the lowest insect infestation levels and the highest energy levels. Energy level in the Botanical treatment was also high and similar to levels in Permethrin and PICS treatments most likely due to fats and essential oils in P. guineense being adsorbed and/or absorbed by kernels. Fat content was lower in the Control and DE treatments likely due to the Control having the highest insect infestation and the DE adsorbing and/or absorbing fat from kernels. During storage carbohydrate content decreased in all treatments except the Control. However, even in the Control, there was a clear trend of decrease in carbohydrate content. Because the Control had the highest insect (Sitophilus zeamais) infestation and insect damaged kernels (IDK), this trend in decrease in carbohydrate content may be insect related. Ash content increased in the ZeroFly treatment, was unchanged in Botanical, Control, and PICS treatments, and decreased in DE and Permethrin treatments. Nutritional quality variables in this study were within or close to the known value ranges for maize. Therefore, use of maize that had been fumigated well and had a relatively low initial grain MC (9.1%), in addition to the effects of the treatments most likely slowed down population growth of the several insect species that were found and contributed to preserving nutritional quality. The relatively low insect populations in all treatments, including the Control, during the February–September period probably reduced the clarity of effects of infestation onnutritional composition reported in this study

Search for Tensor, Vector, and Scalar Polarizations in the Stochastic Gravitational-Wave Background

The detection of gravitational waves with Advanced LIGO and Advanced Virgo has enabled novel tests of general relativity, including direct study of the polarization of gravitational waves. While general relativity allows for only two tensor gravitational-wave polarizations, general metric theories can additionally predict two vector and two scalar polarizations. The polarization of gravitational waves is encoded in the spectral shape of the stochastic gravitational-wave background, formed by the superposition of cosmological and individually unresolved astrophysical sources. Using data recorded by Advanced LIGO during its first observing run, we search for a stochastic background of generically polarized gravitational waves. We find no evidence for a background of any polarization, and place the first direct bounds on the contributions of vector and scalar polarizations to the stochastic background. Under log-uniform priors for the energy in each polarization, we limit the energy densities of tensor, vector, and scalar modes at 95% credibility to Ω0T<5.58×10-8, Ω0V<6.35×10-8, and Ω0S<1.08×10-7 at a reference frequency f0=25 Hz. © 2018 American Physical Society

Discovery and functional prioritization of Parkinson's disease candidate genes from large-scale whole exome sequencing.

BACKGROUND: Whole-exome sequencing (WES) has been successful in identifying genes that cause familial Parkinson's disease (PD). However, until now this approach has not been deployed to study large cohorts of unrelated participants. To discover rare PD susceptibility variants, we performed WES in 1148 unrelated cases and 503 control participants. Candidate genes were subsequently validated for functions relevant to PD based on parallel RNA-interference (RNAi) screens in human cell culture and Drosophila and C. elegans models. RESULTS: Assuming autosomal recessive inheritance, we identify 27 genes that have homozygous or compound heterozygous loss-of-function variants in PD cases. Definitive replication and confirmation of these findings were hindered by potential heterogeneity and by the rarity of the implicated alleles. We therefore looked for potential genetic interactions with established PD mechanisms. Following RNAi-mediated knockdown, 15 of the genes modulated mitochondrial dynamics in human neuronal cultures and four candidates enhanced α-synuclein-induced neurodegeneration in Drosophila. Based on complementary analyses in independent human datasets, five functionally validated genes-GPATCH2L, UHRF1BP1L, PTPRH, ARSB, and VPS13C-also showed evidence consistent with genetic replication. CONCLUSIONS: By integrating human genetic and functional evidence, we identify several PD susceptibility gene candidates for further investigation. Our approach highlights a powerful experimental strategy with broad applicability for future studies of disorders with complex genetic etiologies

Detectable clonal mosaicism and its relationship to aging and cancer

In an analysis of 31,717 cancer cases and 26,136 cancer-free controls from 13 genome-wide association studies, we observed large chromosomal abnormalities in a subset of clones in DNA obtained from blood or buccal samples. We observed mosaic abnormalities, either aneuploidy or copy-neutral loss of heterozygosity, of >2 Mb in size in autosomes of 517 individuals (0.89%), with abnormal cell proportions of between 7% and 95%. In cancer-free individuals, frequency increased with age, from 0.23% under 50 years to 1.91% between 75 and 79 years (P = 4.8 × 10(-8)). Mosaic abnormalities were more frequent in individuals with solid tumors (0.97% versus 0.74% in cancer-free individuals; odds ratio (OR) = 1.25; P = 0.016), with stronger association with cases who had DNA collected before diagnosis or treatment (OR = 1.45; P = 0.0005). Detectable mosaicism was also more common in individuals for whom DNA was collected at least 1 year before diagnosis with leukemia compared to cancer-free individuals (OR = 35.4; P = 3.8 × 10(-11)). These findings underscore the time-dependent nature of somatic events in the etiology of cancer and potentially other late-onset diseases

On the progenitor of binary neutron star merger GW170817

On 2017 August 17 the merger of two compact objects with masses consistent with two neutron stars was discovered through gravitational-wave (GW170817), gamma-ray (GRB 170817A), and optical (SSS17a/AT 2017gfo) observations. The optical source was associated with the early-type galaxy NGC 4993 at a distance of just ∼40 Mpc, consistent with the gravitational-wave measurement, and the merger was localized to be at a projected distance of ∼2 kpc away from the galaxy's center. We use this minimal set of facts and the mass posteriors of the two neutron stars to derive the first constraints on the progenitor of GW170817 at the time of the second supernova (SN). We generate simulated progenitor populations and follow the three-dimensional kinematic evolution from binary neutron star (BNS) birth to the merger time, accounting for pre-SN galactic motion, for considerably different input distributions of the progenitor mass, pre-SN semimajor axis, and SN-kick velocity. Though not considerably tight, we find these constraints to be comparable to those for Galactic BNS progenitors. The derived constraints are very strongly influenced by the requirement of keeping the binary bound after the second SN and having the merger occur relatively close to the center of the galaxy. These constraints are insensitive to the galaxy's star formation history, provided the stellar populations are older than 1 Gyr