327 research outputs found

    Gallus GBrowse: a unified genomic database for the chicken

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    Gallus GBrowse (http://birdbase.net/cgi-bin/gbrowse/gallus/) provides online access to genomic and other information about the chicken, Gallus gallus. The information provided by this resource includes predicted genes and Gene Ontology (GO) terms, links to Gallus In Situ Hybridization Analysis (GEISHA), Unigene and Reactome, the genomic positions of chicken genetic markers, SNPs and microarray probes, and mappings from turkey, condor and zebra finch DNA and EST sequences to the chicken genome. We also provide a BLAT server (http://birdbase.net/cgi-bin/webBlat) for matching user-provided sequences to the chicken genome. These tools make the Gallus GBrowse server a valuable resource for researchers seeking genomic information regarding the chicken and other avian species

    Detecting Molecular Rotational Dynamics Complementing the Low-Frequency Terahertz Vibrations in a Zirconium-Based Metal-Organic Framework

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    We show clear experimental evidence of co-operative terahertz (THz) dynamics observed below 3 THz (~100 cm-1), for a low-symmetry Zr-based metal-organic framework (MOF) structure, termed MIL-140A [ZrO(O2C-C6H4-CO2)]. Utilizing a combination of high-resolution inelastic neutron scattering and synchrotron radiation far-infrared spectroscopy, we measured low-energy vibrations originating from the hindered rotations of organic linkers, whose energy barriers and detailed dynamics have been elucidated via ab initio density functional theory (DFT) calculations. For completeness, we obtained Raman spectra and characterized the alterations to the complex pore architecture caused by the THz rotations. We discovered an array of soft modes with trampoline-like motions, which could potentially be the source of anomalous mechanical phenomena, such as negative linear compressibility and negative thermal expansion. Our results also demonstrate coordinated shear dynamics (~2.5 THz), a mechanism which we have shown to destabilize MOF crystals, in the exact crystallographic direction of the minimum shear modulus (Gmin).Comment: 10 pages, 6 figure

    WKB analysis of relativistic Stern-Gerlach measurements

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    Spin is an important quantum degree of freedom in relativistic quantum information theory. This paper provides a first-principles derivation of the observable corresponding to a Stern-Gerlach measurement with relativistic particle velocity. The specific mathematical form of the Stern-Gerlach operator is established using the transformation properties of the electromagnetic field. To confirm that this is indeed the correct operator we provide a detailed analysis of the Stern-Gerlach measurement process. We do this by applying a WKB approximation to the minimally coupled Dirac equation describing an interaction between a massive fermion and an electromagnetic field. Making use of the superposition principle we show that the +1 and -1 spin eigenstates of the proposed spin operator are split into separate packets due to the inhomogeneity of the Stern-Gerlach magnetic field. The operator we obtain is dependent on the momentum between particle and Stern-Gerlach apparatus, and is mathematically distinct from two other commonly used operators. The consequences for quantum tomography are considered.Comment: 13 pages, no figures. Comments welcom

    Tracking Thermal-Induced Amorphization of a Zeolitic Imidazolate Framework via Synchrotron In Situ Far-Infrared Spectroscopy

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    We present the first use of in situ far-infrared spectroscopy to analyze the thermal amorphization of a zeolitic imidazolate framework material. We explain the nature of vibrational motion changes during the amorphization process and reveal new insights into the effect that temperature has on the Zn-N tetrahedra.Comment: 5 pages, 3 figures, 2 table
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