Taxonomic bias in amphibian research : Are researchers responding to conservation need?

Amphibians are very diverse, widely distributed, and the most endangered class of vertebrates. As with other taxa, effective conservation of amphibians needs to be supported by detailed scientific knowledge. However, species rich and broadly distributed taxa are typically characterized by high variability in research effort. Our objective was therefore to understand which factors (ecological and cultural) have led some amphibian species to be more researched than others. We used two proxies of research effort: i) the total number of articles on Web of Science (WoS) that mention the scientific name (or synonyms) of each species, and; ii) the number of conservation science articles on WoS that mention the scientific name (or synonyms) of each species. These measures were used as dependent variables in zero hurdle regression models with the aim of identifying the most important factors driving species-level knowledge production. Well researched species (generally, and for conservation) tend to have a longer history of scientific research, come from countries with high scientific capacity, have large body size, and to be present in man-made habitats. Endangered species tend to be less researched, generally and for conservation, possibly because they are often more difficult to study: many endangered amphibians are restricted to small, fragmented and remote habitats in countries with low scientific capacity. We conclude with a discussion of how taxonomic biases in research effort on amphibians can be addressed given the limited funds available for conservation research.Peer reviewe

No visit, no interest: How COVID-19 has affected public interest in world's national parks

The use of digital content has become a powerful tool to evaluate and track macro-scale trends in human-nature relations. This is an emerging field of study known as conservation culturomics, that seeks to understand human culture through quantitative analysis in large bodies of digital content. Here, we used relative search volume on Google Search as a culturomic metric of public interest to investigate the global impact of the 2020 COVID-19 pandemic on national parks (NPs). Specifically, we focus on the impacts of limiting people?s mobility (through social isolation and lock-down measures) on public interest in NPs, since this is likely to have a strong causal relationship with park visitation. We generated public interest data for 2411 NPs from around the world for the period January 2016 to July 2020, to explore the relationship between relative search volume and periods of greater and lesser mobility restrictions due to the COVID-19 pandemic. We observed a global trend of declining public interest in national parks during the initial phase of the coronavirus pandemic, although there was considerable variation between both parks and countries. For example, contrary to the global trend public interest in NPs increased in Finland during the first lock-down. Significantly, countries whose national parks are highly dependent on international visitors (e.g., South Africa and India) had very severe declines in public interest. Our study reinforces the key role that visitation plays in driving public interest in national parks and illustrates the utility of culturomic methods for monitoring human-park interactions at scale.Peer reviewe

A big data approach to identify the loss of coastal cultural ecosystem services caused by the 2019 Brazilian oil spill disaster

In August 2019, the Northeast coast of Brazil was impacted by an extensive oil spill, with immediate effects on marine and coastal ecosystems and significant impacts on tourism and food security. The human dimension of those impacts also includes the loss of cultural ecosystem services (CES); the non-material benefits stemming from strongly rooted cultural practices and relationships with nature. CES are of great importance for local residents and visitors that flock to Brazilian iconic beaches, however, they are difficult to measure using traditional assessment methods due to their subjective and non-tangible nature. Here, we use a big data approach to assess and map the loss of CES in the Northeast coast of Brazil caused by the recent oil spill. We analysed 2,880 digital images (published on the image sharing platform Flickr) taken before and during the disaster in affected locations, using a combination of automated techniques. Results showed a sharp decline in the number of users posting photos of locations affected by oil spill, and a decline in photos representing landscape and cultural appreciation. Our big data approach provides a fast and automated way to assess CES at large spatial scales that can be used to monitor the social impacts of environmental disasters.Peer reviewe

Public awareness and engagement in relation to the coastal oil spill in northeast Brazil

Social media data is a rich source of information to assess human activities in catastrophic events. Here, we use social media data to understand how the 2019 Brazilian oil spill influenced social attitudes. Data were collected from the globally popular Instagram platform between August 1, 2019 and March 1, 2020. First, we manually identified the 5 most popular (portuguese language) hashtags related to the oil spill #oleonononordeste;#desastreambiental;#ma rsemoleo;#sosnordeste;#ma rsempetroleo. In the sequence, we collected information on captions, post metadata and users associated with posts retrieved using the selected hashtags. We identified a total of 7,413 posts. These posts were grouped in topics: government (47.76%), protest (24.37%), volunteers (24.45%), biodiversity (0.003%), origin (0.006%), tourism (0.008%) and others (0.016%). All topics had the peak of posts in October and November 2019. Nevertheless, interest in the oil spill was temporary, with most posts appearing in the 2-4 months after the beginning of the disaster. Our findings illustrate the enormous potential of using social media data for understanding and monitoring human engagement with environmental disasters, but also suggest that conservationists and environmental groups may only have a limited 'window of opportunity' to engage and mobilize public support for remediation and restoration efforts.Peer reviewe

TRY plant trait database – enhanced coverage and open access

Plant traits - the morphological, anatomical, physiological, biochemical and phenological characteristics of plants - determine how plants respond to environmental factors, affect other trophic levels, and influence ecosystem properties and their benefits and detriments to people. Plant trait data thus represent the basis for a vast area of research spanning from evolutionary biology, community and functional ecology, to biodiversity conservation, ecosystem and landscape management, restoration, biogeography and earth system modelling. Since its foundation in 2007, the TRY database of plant traits has grown continuously. It now provides unprecedented data coverage under an open access data policy and is the main plant trait database used by the research community worldwide. Increasingly, the TRY database also supports new frontiers of trait‐based plant research, including the identification of data gaps and the subsequent mobilization or measurement of new data. To support this development, in this article we evaluate the extent of the trait data compiled in TRY and analyse emerging patterns of data coverage and representativeness. Best species coverage is achieved for categorical traits - almost complete coverage for ‘plant growth form’. However, most traits relevant for ecology and vegetation modelling are characterized by continuous intraspecific variation and trait–environmental relationships. These traits have to be measured on individual plants in their respective environment. Despite unprecedented data coverage, we observe a humbling lack of completeness and representativeness of these continuous traits in many aspects. We, therefore, conclude that reducing data gaps and biases in the TRY database remains a key challenge and requires a coordinated approach to data mobilization and trait measurements. This can only be achieved in collaboration with other initiatives

Does soil pyrogenic carbon determine plant functional traits in Amazon Basin forests?

Amazon forests are fire-sensitive ecosystems and consequently fires affect forest structure and composition. For instance, the legacy of past fire regimes may persist through some species and traits that are found due to past fires. In this study, we tested for relationships between functional traits that are classically presented as the main components of plant ecological strategies and environmental filters related to climate and historical fires among permanent mature forest plots across the range of local and regional environmental gradients that occur in Amazonia. We used percentage surface soil pyrogenic carbon (PyC), a recalcitrant form of carbon that can persist for millennia in soils, as a novel indicator of historical fire in old-growth forests. Five out of the nine functional traits evaluated across all 378 species were correlated with some environmental variables. Although there is more PyC in Amazonian soils than previously reported, the percentage soil PyC indicated no detectable legacy effect of past fires on contemporary functional composition. More species with dry diaspores were found in drier and hotter environments. We also found higher wood density in trees from higher temperature sites. If Amazon forest past burnings were local and without distinguishable attributes of a widespread fire regime, then impacts on biodiversity would have been small and heterogeneous. Alternatively, sufficient time may have passed since the last fire to allow for species replacement. Regardless, as we failed to detect any impact of past fire on present forest functional composition, if our plots are representative then it suggests that mature Amazon forests lack a compositional legacy of past fire

The evolving SARS-CoV-2 epidemic in Africa: Insights from rapidly expanding genomic surveillance

INTRODUCTION Investment in Africa over the past year with regard to severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) sequencing has led to a massive increase in the number of sequences, which, to date, exceeds 100,000 sequences generated to track the pandemic on the continent. These sequences have profoundly affected how public health officials in Africa have navigated the COVID-19 pandemic. RATIONALE We demonstrate how the first 100,000 SARS-CoV-2 sequences from Africa have helped monitor the epidemic on the continent, how genomic surveillance expanded over the course of the pandemic, and how we adapted our sequencing methods to deal with an evolving virus. Finally, we also examine how viral lineages have spread across the continent in a phylogeographic framework to gain insights into the underlying temporal and spatial transmission dynamics for several variants of concern (VOCs). RESULTS Our results indicate that the number of countries in Africa that can sequence the virus within their own borders is growing and that this is coupled with a shorter turnaround time from the time of sampling to sequence submission. Ongoing evolution necessitated the continual updating of primer sets, and, as a result, eight primer sets were designed in tandem with viral evolution and used to ensure effective sequencing of the virus. The pandemic unfolded through multiple waves of infection that were each driven by distinct genetic lineages, with B.1-like ancestral strains associated with the first pandemic wave of infections in 2020. Successive waves on the continent were fueled by different VOCs, with Alpha and Beta cocirculating in distinct spatial patterns during the second wave and Delta and Omicron affecting the whole continent during the third and fourth waves, respectively. Phylogeographic reconstruction points toward distinct differences in viral importation and exportation patterns associated with the Alpha, Beta, Delta, and Omicron variants and subvariants, when considering both Africa versus the rest of the world and viral dissemination within the continent. Our epidemiological and phylogenetic inferences therefore underscore the heterogeneous nature of the pandemic on the continent and highlight key insights and challenges, for instance, recognizing the limitations of low testing proportions. We also highlight the early warning capacity that genomic surveillance in Africa has had for the rest of the world with the detection of new lineages and variants, the most recent being the characterization of various Omicron subvariants. CONCLUSION Sustained investment for diagnostics and genomic surveillance in Africa is needed as the virus continues to evolve. This is important not only to help combat SARS-CoV-2 on the continent but also because it can be used as a platform to help address the many emerging and reemerging infectious disease threats in Africa. In particular, capacity building for local sequencing within countries or within the continent should be prioritized because this is generally associated with shorter turnaround times, providing the most benefit to local public health authorities tasked with pandemic response and mitigation and allowing for the fastest reaction to localized outbreaks. These investments are crucial for pandemic preparedness and response and will serve the health of the continent well into the 21st century