Quantitative evaluation of polymer gel dosimeters by broadband ultrasound attenuation

Ultrasound has been examined previously as an alternative readout method for irradiated polymer gel dosimeters, with authors reporting varying dose response to ultrasound transmission measurements. In this current work we extend previous work to measure the broadband ultrasound attenuation (BUA) response of irradiated PAGAT gel dosimeters, using a novel ultrasound computed tomography system

New measurements of the cosmic infrared background fluctuations in deep Spitzer/IRAC survey data and their cosmological implications

We extend previous measurements of cosmic infrared background (CIB) fluctuations to ~ 1 deg using new data from the Spitzer Extended Deep Survey. Two fields, with depths of ~12 hr/pixel over 3 epochs, are analyzed at 3.6 and 4.5 mic. Maps of the fields were assembled using a self-calibration method uniquely suitable for probing faint diffuse backgrounds. Resolved sources were removed from the maps to a magnitude limit of AB mag ~ 25, as indicated by the level of the remaining shot noise. The maps were then Fourier-transformed and their power spectra were evaluated. Instrumental noise was estimated from the time-differenced data, and subtracting this isolates the spatial fluctuations of the actual sky. The power spectra of the source-subtracted fields remain identical (within the observational uncertainties) for the three epochs indicating that zodiacal light contributes negligibly to the fluctuations. Comparing to 8 mic power spectra shows that Galactic cirrus cannot account for the fluctuations. The signal appears isotropically distributed on the sky as required for an extragalactic origin. The CIB fluctuations continue to diverge to > 10 times those of known galaxy populations on angular scales out to < 1 deg. The low shot noise levels remaining in the diffuse maps indicate that the large scale fluctuations arise from the spatial clustering of faint sources well below the confusion noise. The spatial spectrum of these fluctuations is in reasonable agreement with an origin in populations clustered according to the standard cosmological model (LCDM) at epochs coinciding with the first stars era.Comment: ApJ, to be publishe

Geodesic distance for right invariant Sobolev metrics of fractional order on the diffeomorphism group

We study Sobolev-type metrics of fractional order $s\geq0$ on the group \Diff_c(M) of compactly supported diffeomorphisms of a manifold $M$. We show that for the important special case $M=S^1$ the geodesic distance on \Diff_c(S^1) vanishes if and only if $s\leq\frac12$. For other manifolds we obtain a partial characterization: the geodesic distance on \Diff_c(M) vanishes for $M=\R\times N, s<\frac12$ and for $M=S^1\times N, s\leq\frac12$, with $N$ being a compact Riemannian manifold. On the other hand the geodesic distance on \Diff_c(M) is positive for $\dim(M)=1, s>\frac12$ and $\dim(M)\geq2, s\geq1$. For $M=\R^n$ we discuss the geodesic equations for these metrics. For $n=1$ we obtain some well known PDEs of hydrodynamics: Burgers' equation for $s=0$, the modified Constantin-Lax-Majda equation for $s=\frac 12$ and the Camassa-Holm equation for $s=1$.Comment: 16 pages. Final versio

Submillimeter wavelength survey of the galactic plane from l = -5 deg to l = +62 deg: Structure and energetics of the inner disk

Results from a large scale survey of the first quadrant of the Milky Way galactic plane at wavelengths of 150, 250, and 300 microns with a 10x10 arcmin beam are presented. The emission detected in the survey arises from compact sources, most of which are identified with known peaks of 5 GHz and/or CO emission, and from an underlying diffuse background with a typical angular width of approximately 0.9 deg (FWHM) which accounts for most of the emission. A total of 80 prominent discrete sources were identified and characterized, of which about half were not previously reported at far infrared wavelengths. The total infrared luminosity within the solar circle is approximately 1 to 2x10 to the 10th power L sub 0, and is probably emitted by dust that resides in molecular clouds

How Big of an Effect Do Small Dams Have? Using Geomorphological Footprints to Quantify Spatial Impact of Low-Head Dams and Identify Patterns of Across-Dam Variation

Citation: Fencl, J. S., Mather, M. E., Costigan, K. H., & Daniels, M. D. (2015). How Big of an Effect Do Small Dams Have? Using Geomorphological Footprints to Quantify Spatial Impact of Low-Head Dams and Identify Patterns of Across-Dam Variation. Plos One, 10(11), 22. doi:10.1371/journal.pone.0141210Longitudinal connectivity is a fundamental characteristic of rivers that can be disrupted by natural and anthropogenic processes. Dams are significant disruptions to streams. Over 2,000,000 low-head dams (<7.6 m high) fragment United States rivers. Despite potential adverse impacts of these ubiquitous disturbances, the spatial impacts of low-head dams on geomorphology and ecology are largely untested. Progress for research and conservation is impaired by not knowing the magnitude of low-head dam impacts. Based on the geomorphic literature, we refined a methodology that allowed us to quantify the spatial extent of low-head dam impacts (herein dam footprint), assessed variation in dam footprints across low-head dams within a river network, and identified select aspects of the context of this variation. Wetted width, depth, and substrate size distributions upstream and downstream of six low-head dams within the Upper Neosho River, Kansas, United States of America were measured. Total dam footprints averaged 7.9 km (3.0-15.3 km) or 287 wetted widths (136437 wetted widths). Estimates included both upstream (mean: 6.7 km or 243 wetted widths) and downstream footprints (mean: 1.2 km or 44 wetted widths). Altogether the six low-head dams impacted 47.3 km (about 17%) of the mainstem in the river network. Despite differences in age, size, location, and primary function, the sizes of geomorphic footprints of individual low-head dams in the Upper Neosho river network were relatively similar. The number of upstream dams and distance to upstream dams, but not dam height, affected the spatial extent of dam footprints. In summary, ubiquitous low-head dams individually and cumulatively altered lotic ecosystems. Both characteristics of individual dams and the context of neighboring dams affected low-head dam impacts within the river network. For these reasons, low-head dams require a different, more integrative, approach for research and management than the individualistic approach that has been applied to larger dams

Identification of genes coding for B cell antigens of Mycoplasma mycoides subsp. mycoides Small Colony (MmmSC) by using phage display

<p>Abstract</p> <p>Background</p> <p>Contagious bovine pleuropneumonia (CBPP) is a mycoplasmal disease caused by <it>Mycoplasma mycoides </it>subsp. <it>mycoides </it>SC (<it>Mmm</it>SC). Since the disease is a serious problem that can affect cattle production in parts of Africa, there is a need for an effective and economical vaccine. Identifying which of the causative agent's proteins trigger potentially protective immune responses is an important step towards developing a subunit vaccine. Accordingly, the purpose of this study was to determine whether phage display combined with bioinformatics could be used to narrow the search for genes that code for potentially immunogenic proteins of <it>Mmm</it>SC. Since the production of IgG2 and IgA are associated with a Th₁cellular immune response which is implicated in protection against CBPP, antigens which elicit these immunoglobulin subclasses may be useful in developing a subunit vaccine.</p> <p>Results</p> <p>A filamentous phage library displaying a repertoire of peptides expressed by fragments of the genome of <it>MmmSC </it>was constructed. It was subjected to selection using antibodies from naturally- and experimentally-infected cattle. Mycoplasmal genes were identified by matching the nucleotide sequences of DNA from immunoselected phage particles with the mycoplasmal genome. This allowed a catalogue of genes coding for the proteins that elicited an immune response to be compiled. Using this method together with computer algorithms designed to score parameters that influence surface accessibility and hence potential antigenicity, five genes (<it>abc, gapN, glpO, lppB </it>and <it>ptsG</it>) were chosen to be expressed in <it>Escherichia coli</it>. After appropriate site-directed mutagenesis, polypeptides representing portions of each of these proteins were tested for immunoreactivity. Of these five, polypeptides representing expression products of <it>abc </it>and <it>lppB </it>were recognised on immunoblots by sera obtained from cattle during a natural outbreak of the disease.</p> <p>Conclusion</p> <p>Since phage display physically couples phenotype with genotype, it was used to compile a list of sequences that code for <it>Mmm</it>SC proteins bearing epitopes which were recognised by antibodies in the serum of infected animals. Together with the appropriate bioinformatic analyses, this approach provided several potentially useful vaccine or diagnostic leads. The phage display step empirically identified sequences by their interaction with antibodies which accordingly reduced the number of ORFs that had to be expressed for testing. This is a particular advantage when working with <it>Mmm</it>SC since the mycoplasmal codon for tryptophan needs to be mutated to prevent it from being translated as a stop in <it>E. coli</it>.</p

Moving boulders in flash floods and estimating flow conditions using boulders in ancient deposits

Boulders moving in flash floods cause considerable damage and casualties. More and bigger boulders move in flash floods than predicted from published theory. The interpretation of flow conditions from the size of large particles within flash flood deposits has, until now, generally assumed that the velocity (or discharge) is unchanging in time (i.e. flow is steady), or changes instantaneously between periods of constant conditions. Standard practice is to apply theories developed for steady flow conditions to flash floods, which are however inherently very unsteady flows. This is likely to lead to overestimates of peak flow velocity (or discharge). Flash floods are characterised by extremely rapid variations in flow that generate significant transient forces in addition to the mean-flow drag. These transient forces, generated by rapid velocity changes, are generally ignored in published theories, but they are briefly so large that they could initiate the motion of boulders. This paper develops a theory for the initiation of boulder movement due to the additional impulsive force generated by unsteady flow, and discusses the implications. Keywords

Invariants of Artinian Gorenstein Algebras and Isolated Hypersurface Singularities

We survey our recently proposed method for constructing biholomorphic invariants of quasihomogeneous isolated hypersurface singularities and, more generally, invariants of graded Artinian Gorenstein algebras. The method utilizes certain polynomials associated to such algebras, called nil-polynomials, and we compare them with two other classes of polynomials that have also been used to produce invariants.Comment: 13 page

Looking for Pure Rotational H_2 Emission from Protoplanetary Disks

We report on a limited search for pure-rotational molecular hydrogen emission associated with young, pre-main-sequence stars. We looked for H_2 v=0 J = 3->1 and J = 4->2 emission in the mid-infrared using the Texas Echelon-Cross-Echelle Spectrograph (TEXES) at NASA's 3m Infrared Telescope Facility. The high spectral and spatial resolution of our observations lead to more stringent limits on narrow line emission close to the source than previously achieved. One star, AB Aur, shows a possible (2sigma) H_2 detection, but further observations are required to make a confident statement. Our non-detections suggest that a significant fraction, perhaps all, of previously reported H_2 emission towards these objects could be extended on scales of 5" or more.Comment: 14 pages including 2 figures. Accepted by ApJ Letter