PrismatoidPatNet54: An Accurate ECG Signal Classification Model Using Prismatoid Pattern-Based Learning Architecture

Background and objective: Arrhythmia is a widely seen cardiologic ailment worldwide, and is diagnosed using electrocardiogram (ECG) signals. The ECG signals can be translated manually by human experts, but can also be scheduled to be carried out automatically by some agents. To easily diagnose arrhythmia, an intelligent assistant can be used. Machine learning-based automatic arrhythmia detection models have been proposed to create an intelligent assistant. Materials and Methods: In this work, we have used an ECG dataset. This dataset contains 1000 ECG signals with 17 categories. A new hand-modeled learning network is developed on this dataset, and this model uses a 3D shape (prismatoid) to create textural features. Moreover, a tunable Q wavelet transform with low oscillatory parameters and a statistical feature extractor has been applied to extract features at both low and high levels. The suggested prismatoid pattern and statistical feature extractor create features from 53 sub-bands. A neighborhood component analysis has been used to choose the most discriminative features. Two classifiers, k nearest neighbor (kNN) and support vector machine (SVM), were used to classify the selected top features with 10-fold cross-validation. Results: The calculated best accuracy rate of the proposed model is equal to 97.30% using the SVM classifier. Conclusion: The computed results clearly indicate the success of the proposed prismatoid pattern-based model

Two types of martensitic phase transformations in magnetic shape memory alloys by in-situ nanoindentation studies

Ni based magnetic shape memory alloys (MSMAs) have broad applications in actuators and MEMS devices. Two-stage stress induced martensitic phase transformation, a widely observed phenomenon in these alloys, is described conventionally as a first stage L21 (austenite)-to-10M/14M (M: modulated martensite) transition, followed by a second stage 14M-to-L10 (tetragonal martensite) transformation at higher stresses. Here we show, for the first time via in-situ nanoindentation on single crystalline Ni54Fe19Ga27 alloy, that a reversible L21-to-10M/14M transformations took place at lower stress. However at higher stress, an irreversible transition from residual L21 to L10 martensite (a second type of phase transformation) occurred. Furthermore phase fronts propagate gradually during the L21-to-10M/14M transformation, whereas L10 is abruptly emitted in a jerky style during the 14M-to-L10 transformation. Detailed examination of crystal structure suggests that a direct transition from 14M to observed L10 is crystallographically forbidden in the current loading condition. This study provides new perspective for understanding of stress induced various types of phase transformations in MSMAs. This research is funded by NSF-CMMI under grant no. 1129065

Interaction of CO2 laser-modified nylon with osteoblast cells in relation to wettability

It has been amply demonstrated previously that CO2 lasers hold the ability to surface modify various polymers. In addition, it has been observed that these surface enhancements can augment the biomimetic nature of the laser irradiated materials. This research has employed a CO2 laser marker to produce trench and hatch topographical patterns with peak heights of around 1 μm on the surface of nylon 6,6. The patterns generated have been analysed using white light interferometery, optical microscopy and X-ray photoelectron spectroscopy was employed to determine the surface oxygen content. Contact angle measurements were used to characterize each sample in terms of wettability. Generally, it was seen that as a result of laser processing the contact angle, surface roughness and surface oxygen content increased whilst the apparent polar and total surface energies decreased. The increase in contact angle and reduction in surface energy components was found to be on account of a mixed intermediate state wetting regime owing to the change in roughness due to the induced topographical patterns. To determine the biomimetic nature of the modified and as-received control samples each one was seeded with 2×104 cells/ml normal human osteoblast cells and observed after periods of 24 hours and 4 days using optical microscopy and SEM to determine mean cell cover densities and variations in cell morphology. In addition a haeymocytometer was used to show that the cell count for the laser patterned samples had increased by up to a factor of 1.5 compared to the as-received control sample after 4 days of incubation. Significantly, it was determined that all laser-induced patterns gave rise to better cell response in comparison to the as-received control sample studied due to increased preferential cell growth on those surfaces with increased surface roughness

PRUNE is crucial for normal brain development and mutated in microcephaly with neurodevelopmental impairment.

PRUNE is a member of the DHH (Asp-His-His) phosphoesterase protein superfamily of molecules important for cell motility, and implicated in cancer progression. Here we investigated multiple families from Oman, India, Iran and Italy with individuals affected by a new autosomal recessive neurodevelopmental and degenerative disorder in which the cardinal features include primary microcephaly and profound global developmental delay. Our genetic studies identified biallelic mutations of PRUNE1 as responsible. Our functional assays of disease-associated variant alleles revealed impaired microtubule polymerization, as well as cell migration and proliferation properties, of mutant PRUNE. Additionally, our studies also highlight a potential new role for PRUNE during microtubule polymerization, which is essential for the cytoskeletal rearrangements that occur during cellular division and proliferation. Together these studies define PRUNE as a molecule fundamental for normal human cortical development and define cellular and clinical consequences associated with PRUNE mutation

A Mechanistic View of the Role of E3 in Sumoylation

Sumoylation, the covalent attachment of SUMO (Small Ubiquitin-Like Modifier) to proteins, differs from other Ubl (Ubiquitin-like) pathways. In sumoylation, E2 ligase Ubc9 can function without E3 enzymes, albeit with lower reaction efficiency. Here, we study the mechanism through which E3 ligase RanBP2 triggers target recognition and catalysis by E2 Ubc9. Two mechanisms were proposed for sumoylation. While in both the first step involves Ubc9 conjugation to SUMO, the subsequent sequence of events differs: in the first E2-SUMO forms a complex with the target and E3, followed by SUMO transfer to the target. In the second, Ubc9-SUMO binds to the target and facilitates SUMO transfer without E3. Using dynamic correlations obtained from explicit solvent molecular dynamic simulations we illustrate the key roles played by allostery in both mechanisms. Pre-existence of conformational states explains the experimental observations that sumoylation can occur without E3, even though at a reduced rate. Furthermore, we propose a mechanism for enhancement of sumoylation by E3. Analysis of the conformational ensembles of the complex of E2 conjugated to SUMO illustrates that the E2 enzyme is already largely pre-organized for target binding and catalysis; E3 binding shifts the equilibrium and enhances these pre-existing populations. We further observe that E3 binding regulates allosterically the key residues in E2, Ubc9 Asp100/Lys101 E2, for the target recognition

Vaccines as alternatives to antibiotics for food producing animals. Part 1:challenges and needs

Vaccines and other alternative products can help minimize the need for antibiotics by preventing and controlling infectious diseases in animal populations, and are central to the future success of animal agriculture. To assess scientific advancements related to alternatives to antibiotics and provide actionable strategies to support their development, the United States Department of Agriculture, with support from the World Organisation for Animal Health, organized the second International Symposium on Alternatives to Antibiotics. It focused on six key areas: vaccines; microbial-derived products; non-nutritive phytochemicals; immune-related products; chemicals, enzymes, and innovative drugs; and regulatory pathways to enable the development and licensure of alternatives to antibiotics. This article, part of a two-part series, synthesizes and expands on the expert panel discussions regarding opportunities, challenges and needs for the development of vaccines that may reduce the need for use of antibiotics in animals; new approaches and potential solutions will be discussed in part 2 of this series. Vaccines are widely used to prevent infections in food animals. Various studies have demonstrated that their animal agricultural use can lead to significant reductions in antibiotic consumption, making them promising alternatives to antibiotics. To be widely used in food producing animals, vaccines have to be safe, effective, easy to use, and cost-effective. Many current vaccines fall short in one or more of these respects. Scientific advancements may allow many of these limitations to be overcome, but progress is funding-dependent. Research will have to be prioritized to ensure scarce public resources are dedicated to areas of potentially greatest impact first, and private investments into vaccine development constantly compete with other investment opportunities. Although vaccines have the potential to improve animal health, safeguard agricultural productivity, and reduce antibiotic consumption and resulting resistance risks, targeted research and development investments and concerted efforts by all affected are needed to realize that potential