Competition between plant and bacterial cells at the microscale regulates the dynamics of nitrogen acquisition in wheat (Triticum aestivum)

The ability of plants to compete effectively for nitrogen (N) resources is critical to plant survival. However, controversy surrounds the importance of organic and inorganic sources of N in plant nutrition because of our poor ability to visualize and understand processes happening at the root�microbial�soil interface. Using high-resolution nano-scale secondary ion mass spectrometry stable isotope imaging (NanoSIMS-SII), we quantified the fate of 15N over both space and time within the rhizosphere. We pulse-labelled the soil surrounding wheat (Triticum aestivum) roots with either inline image or 15N-glutamate and traced the movement of 15N over 24 h. Imaging revealed that glutamate was rapidly depleted from the rhizosphere and that most 15N was captured by rhizobacteria, leading to very high 15N microbial enrichment. After microbial capture, approximately half of the 15N-glutamate was rapidly mineralized, leading to the excretion of inline image, which became available for plant capture. Roots proved to be poor competitors for 15N-glutamate and took up N mainly as inline image. Spatial mapping of 15N revealed differential patterns of 15N uptake within bacteria and the rapid uptake and redistribution of 15N within roots. In conclusion, we demonstrate the rapid cycling and transformation of N at the soil�root interface and that wheat capture of organic N is low in comparison to inorganic N under the conditions tested

The effect of Nb on the corrosion and hydrogen pick-up of Zr alloys

Abstract Zr-Nb alloys are known to perform better in corrosion and hydrogen pick-up than other Zr alloys but the mechanism by which this happens is not well understood. Atomistic simulations using density functional theory of both tetragonal and monoclinic ZrO2 were performed, with intrinsic defects and Nb dopants. The overall defect populations with respect to oxygen partial pressure were calculated and presented in the form of Brouwer diagrams. Nb is found to favour 5 + in monoclinic ZrO2 at all partial pressures, but can exist in oxidation states ranging from 5 + to 3 + in the tetragonal phase. Nb5+ is charge balanced by Zr vacancies in both phases, suggesting that contrary to previous assumptions, Nb does not act as an n-type dopant in the oxide layer. Clusters containing oxygen vacancies were considered, Nb2+ was shown to exist in the tetragonal phase with a binding energy of 2.4 eV. This supports the proposed mechanism whereby low oxidation state Nb ions (2 + or 3+) charge balance the build-up of positive space-charge in the oxide layer, increasing oxygen vacancy and electron mobility, leading to near-parabolic corrosion kinetics and a reduced hydrogen pick-up. Previous experimental work has shown that tetragonal ZrO2 transforms to the monoclinic phase during transition, and that during transition a sharp drop in the instantaneous hydrogen pick-up fraction occurs. The oxidation of lower charge state Nb defects to Nb5+ during this phase change, and the consequent temporary n-doping of the oxide layer, is proposed as an explanation for the drop in hydrogen pick-up during transition

The effect of Nb on the corrosion and hydrogen pick-up of Zr alloys

Abstract Zr-Nb alloys are known to perform better in corrosion and hydrogen pick-up than other Zr alloys but the mechanism by which this happens is not well understood. Atomistic simulations using density functional theory of both tetragonal and monoclinic ZrO2 were performed, with intrinsic defects and Nb dopants. The overall defect populations with respect to oxygen partial pressure were calculated and presented in the form of Brouwer diagrams. Nb is found to favour 5 + in monoclinic ZrO2 at all partial pressures, but can exist in oxidation states ranging from 5 + to 3 + in the tetragonal phase. Nb5+ is charge balanced by Zr vacancies in both phases, suggesting that contrary to previous assumptions, Nb does not act as an n-type dopant in the oxide layer. Clusters containing oxygen vacancies were considered, Nb2+ was shown to exist in the tetragonal phase with a binding energy of 2.4 eV. This supports the proposed mechanism whereby low oxidation state Nb ions (2 + or 3+) charge balance the build-up of positive space-charge in the oxide layer, increasing oxygen vacancy and electron mobility, leading to near-parabolic corrosion kinetics and a reduced hydrogen pick-up. Previous experimental work has shown that tetragonal ZrO2 transforms to the monoclinic phase during transition, and that during transition a sharp drop in the instantaneous hydrogen pick-up fraction occurs. The oxidation of lower charge state Nb defects to Nb5+ during this phase change, and the consequent temporary n-doping of the oxide layer, is proposed as an explanation for the drop in hydrogen pick-up during transition

The effect of Sn-VO defect clustering on Zr alloy corrosion

Density functional theory simulations were used to study Sn defect clusters in the oxide layer of Zr-alloys. Clustering was shown to play a key role in the accommodation of Sn in ZrO2, with the {SnZr:VO}× bound defect cluster dominant at all oxygen partial pressures below 10-20 atm, above which Sn Zr × is preferred. {SnZr:VO}× is predicted to increase the tetragonal phase fraction in the oxide layer, due to the elevated oxygen vacancy concentration. As corrosion progresses, the transition to Sn Zr × , and resultant destabilisation of the tetragonal phase, is proposed as a possible explanation for the early first transition observed in Sn-containing Zr-Nb alloys

Mass spectrometry based metabolomics comparison of liver grafts from donors after circulatory death (DCD) and donors after brain death (DBD) used in human orthotopic liver transplantation

Use of marginal liver grafts, especially those from donors after circulatory death (DCD), has been considered as a solution to organ shortage. Inferior outcomes have been attributed to donor warm ischaemic damage in these DCD organs. Here we sought to profile the metabolic mechanisms underpinning donor warm ischaemia. Non-targeted Fourier transform ion cyclotron resonance (FT-ICR) mass spectrometry metabolomics was applied to biopsies of liver grafts from donors after brain death (DBD; n = 27) and DCD (n = 10), both during static cold storage (T1) as well as post-reperfusion (T2). Furthermore 6 biopsies from DBD donors prior to the organ donation (T0) were also profiled. Considering DBD and DCD together, significant metabolic differences were discovered between T1 and T2 (688 peaks) that were primarily related to amino acid metabolism, meanwhile T0 biopsies grouped together with T2, denoting the distinctively different metabolic activity of the perfused state. Major metabolic differences were discovered between DCD and DBD during cold-phase (T1) primarily related to glucose, tryptophan and kynurenine metabolism, and in the post-reperfusion phase (T2) related to amino acid and glutathione metabolism. We propose tryptophan/kynurenine and S-adenosylmethionine as possible biomarkers for the previously established higher graft failure of DCD livers, and conclude that the associated pathways should be targeted in more exhaustive and quantitative investigations

The effects of macroscopic inhomogeneities on the magneto transport properties of the electron gas in two dimensions

In experiments on electron transport the macroscopic inhomogeneities in the sample play a fundamental role. In this paper and a subsequent one we introduce and develop a general formalism that captures the principal features of sample inhomogeneities (density gradients, contact misalignments) in the magneto resistance data taken from low mobility heterostructures. We present detailed assessments and experimental investigations of the different regimes of physical interest, notably the regime of semiclassical transport at weak magnetic fields, the plateau-plateau transitions as well as the plateau-insulator transition that generally occurs at much stronger values of the external field only. It is shown that the semiclassical regime at weak fields plays an integral role in the general understanding of the experiments on the quantum Hall regime. The results of this paper clearly indicate that the plateau-plateau transitions, unlike the the plateau-insulator transition, are fundamentally affected by the presence of sample inhomogeneities. We propose a universal scaling result for the magneto resistance parameters. This result facilitates, amongst many other things, a detailed understanding of the difficulties associated with the experimental methodology of H.P. Wei et.al in extracting the quantum critical behavior of the electron gas from the transport measurements conducted on the plateau-plateau transitions.Comment: 20 pages, 9 figure

Catecholaminergic regulation of learning rate in a dynamic environment

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Anomalous Superconducting Properties and Field Induced Magnetism in CeCoIn5

In the heavy fermion superconductor CeCoIn5 (Tc=2.3K) the critical field is large, anisotropic and displays hysteresis. The magnitude of the critical-field anisotropy in the a-c plane can be as large as 70 kOe and depends on orientation. Critical field measurements in the (110) plane suggest 2D superconductivity, whereas conventional effective mass anisotropy is observed in the (100) plane. Two distinct field-induced magnetic phases are observed: Ha appears deep in the superconducting phase, while Hb intersects Hc2 at T=1.4 K and extends well above Tc. These observations suggest the possible realization of a direct transition from ferromagnetism to Fulde-Ferrel-Larkin-Ovchinnikov superconductivity in CeCoIn5.Comment: 4 pages, 3 figure

The impact of patient travel time on disparities in treatment for early stage lung cancer in California

Background Travel time to treatment facilities may impede the receipt of guideline-concordant treatment (GCT) among patients diagnosed with early-stage non-small cell lung cancer (ES-NSCLC). We investigated the relative contribution of travel time in the receipt of GCT among ES-NSCLC patients. Methods We included 22,821 ES-NSCLC patients diagnosed in California from 2006–2015. GCT was defined using the 2016 National Comprehensive Cancer Network guidelines, and delayed treatment was defined as treatment initiation >6 versus ≤6 weeks after diagnosis. Mean-centered driving and public transit times were calculated from patients’ residential block group centroid to the treatment facilities. We used logistic regression to estimate risk ratios and 95% confidence intervals (CIs) for the associations between patients’ travel time and receipt of GCT and timely treatment, overall and by race/ethnicity and neighborhood socioeconomic status (nSES). Results Overall, a 15-minute increase in travel time was associated with a decreased risk of undertreatment and delayed treatment. Compared to Whites, among Blacks, a 15-minute increase in driving time was associated with a 24% (95%CI = 8%-42%) increased risk of undertreatment, and among Filipinos, a 15-minute increase in public transit time was associated with a 27% (95%CI = 13%-42%) increased risk of delayed treatment. Compared to the highest nSES, among the lowest nSES, 15-minute increases in driving and public transit times were associated with 33% (95%CI = 16%-52%) and 27% (95%CI = 16%-39%) increases in the risk of undertreatment and delayed treatment, respectively. Conclusion The benefit of GCT observed with increased travel times may be a ‘Travel Time Paradox,’ and may vary across racial/ethnic and socioeconomic groups

Limited Lifespan of Fragile Regions in Mammalian Evolution

An important question in genome evolution is whether there exist fragile regions (rearrangement hotspots) where chromosomal rearrangements are happening over and over again. Although nearly all recent studies supported the existence of fragile regions in mammalian genomes, the most comprehensive phylogenomic study of mammals (Ma et al. (2006) Genome Research 16, 1557-1565) raised some doubts about their existence. We demonstrate that fragile regions are subject to a "birth and death" process, implying that fragility has limited evolutionary lifespan. This finding implies that fragile regions migrate to different locations in different mammals, explaining why there exist only a few chromosomal breakpoints shared between different lineages. The birth and death of fragile regions phenomenon reinforces the hypothesis that rearrangements are promoted by matching segmental duplications and suggests putative locations of the currently active fragile regions in the human genome