Türkiye’de fizyoloji lisansüstü eğitimine genel bakış

A questionnaire was prepared to determine the current situation, characteristics, main problems and solution proposals of post-graduate physiology education in Turkey. The questionnaire was answered by 40% of the physiology departments with post-graduate programs. The results of the questionnaire demonstrate that 31% of master students and 45% of PhD students have academic positions. Most of the post-graduate physiology students are employed in the "academic staff training program" (62% of master and 59% of PhD students). Post-graduate physiology students were mainly composed of biologists (25%) and medical doctors (21%). All or the majority (81%) of postgraduate students have completed their education within the legal periods. We have observed that post-graduate physiology students do not sufficiently benefit from the national and international student exchange programs, scholarships and do not participate in academic activities. Publication rates of the post-graduate thesis in national and international journals are also below the anticipated level. The general problems faced in providing post-graduate physiology education are insufficiency of available academic positions, scholarships, number of academic staff, inadequate financial support in producing qualified research as well as lack of infrastructure. The results of the questionnaire demonstrate that comprehensive studies with broad participation are necessary in order to improve post-graduate education in our country

Effects of Saccharomyces boulardii on antibiotic induced orocecal transit in rats

Clarithromycin is an antibiotic widely used for Helicobacter pylori (H. pylori) eradication and together with amoxicillin and proton pump inhibitors they constitute the first line triple treatment regimen against H. pylori. Diarrhoea is one of the major drawbacks during H. pylori eradication and is majorly attributed to clarithromycin, while Saccharomyces boulardii is a probiotic and is shown to be effective in the treatment of antibiotic associated diarrhoea. We aimed to evaluate the effect of clarithromycin on orocecal transit in rats and to identify whether the supplementation with S. boulardii has a role on orocecal transit index. Adult rats of both sexes were divided into two groups to determine immediate or chronic effects of S. boulardii and clarithromycin on orocecal transit. The first group was given single dose of the test drug, while the second group received the test drugs for one week through orogastric intubation. Both groups were randomly distributed into four subgroups; the placebo group (group A), the S. boulardii group (group B), the clarithromycin group (group C), and the co-administration that is clarithromycin plus S. boulardii group (group D). Rats were given 20 mg kg−1 clarithromycin and 500 mg kg−1S. boulardii. We did not find any difference among the subgroups in group 1, where only single dose of the test drugs was administered. In chronic administration group, that is group 2, significant differences among the subgroups were observed (P=0.004). Post-hoc comparisons of orocecal transit index between group “2A and 2C” and “2C and 2D” were significantly different (P=0.013 and P=0.005, respectively). Our results show that long term clarithromycin administration leads to rapid orocecal transit index and S. boulardii supplementation to clarithromycin can abolish this adverse effect in rats. Those findings suggest the beneficial use of S. boulardii in H. pylori eradication regimens

Large negative lymph nodes – a surrogate for immune activation in rectal cancer patients?

Aim: The size of regional, tumor draining lymph nodes without metastasis (LNneg) found in rectal cancer resection specimens varies and seems to be related to patient survival. Yet, the histopathological features influencing LNneg size in rectal cancer have not been studied in detail. Our pilot study focused on investigating the relationship between lymph node (LN) size and LNneg microarchitecture in rectal cancer (RC) resection specimens. Method: In this retrospective cohort study, resection specimens from 146 RC patients, treated with either surgery alone (n = 29) or neoadjuvant therapy followed by resection (n = 117), were included in the study. Histology of LNnegs was reviewed to establish number of lymphoid follicles and presence of intranodal fat. Longest long axis and area of each LN were measured digitally. Results: 1830 LNnegs were measured. The microarchitecture was analyzed in a subset of 680 LNnegs. 153 (22.5 %) LNnegs contained intranodal fat. After neoadjuvant treatment, presence of intranodal fat was related to smaller LNneg area (median (range) area of LNneg without intranodal fat: 4.51 mm2 (0.15-46.89 mm2), with intranodal fat: 3.46 mm2 (0.12-27.22 mm2), p = 0.048). A higher number of lymphoid follicles was related to a larger LNneg area in both patient groups (p < 0.001). Conclusion: Our pilot data suggest that in rectal cancer the presence of large regional LNnegs may reflect increased immune activation due to tumor related antigens. Further studies are warranted to investigate whether histologically visible microarchitectural features of LNnegs such as lymphoid follicles translate to particular features in radiological images and hence could potentially help to identify LNneg with more certainty at the time of pre-treatment disease staging

An overview of the post-graduate physiology education in Turkey

A questionnaire was prepared to determine the current situation, characteristics, main problems and solution proposals of post-graduate physiology education in Turkey. The questionnaire was answered by 40% of the physiology departments with post-graduate programs. The results of the questionnaire demonstrate that 31% of master students and 45% of PhD students have academic positions. Most of the post-graduate physiology students are employed in the "academic staff training program" (62% of master and 59% of PhD students). Post-graduate physiology students were mainly composed of biologists (25%) and medical doctors (21%). All or the majority (81%) of postgraduate students have completed their education within the legal periods. We have observed that post-graduate physiology students do not sufficiently benefit from the national and international student exchange programs, scholarships and do not participate in academic activities. Publication rates of the post-graduate thesis in national and international journals are also below the anticipated level. The general problems faced in providing post-graduate physiology education are insufficiency of available academic positions, scholarships, number of academic staff, inadequate financial support in producing qualified research as well as lack of infrastructure. The results of the questionnaire demonstrate that comprehensive studies with broad participation are necessary in order to improve post-graduate education in our country

UPGMA and artificial neural networks applications on wild type olives

WOS: 000413107700026Aim: Plant genetic sources are important to study genetic variability and richness of hereditary knowledge of plant species in gene pool. Local varieties, rural populations, wild types and old varieties are the primary ones. In this respect, wild type olives (Olea europaea oleaster) are valuable in terms of olive breeding, cultivation and ecosystem. The aim of the study was to determine genetic distances between olive varieties. Methodology: Artificial Neural Networks intuitive algorithm application was performed on seven wild type olives grown in different regions of Turkey by using data obtained from twenty-two ISSR primers. Results: UPGMA dendrograms were developed through Jaccard, simple matching coefficients, and similarity matrices; and genetic similarities and dissimilarities were exhibited. Interpretation: It was concluded that Artificial Neural Networks would be beneficial for estimating olive types accurately based on the results obtained from earlier studies performed with genetic markers.Scientific Research Projects Coordination Unit of Manisa Celal Bayer University, Manisa, TurkeyThis study has been supported by the Scientific Research Projects Coordination Unit of Manisa Celal Bayer University, Manisa, Turkey