772 research outputs found
Development of a 3D tissue engineered skeletal muscle and bone pre-clinical co-culture platform
Pre-clinical studies are a necessary step in the process of material and drug testing. For this, high-throughput monolayer cell cultures are conducted followed by in vivo animal experiments. However, animal use is ethically questionable and in many cases yields misleading results. In vitro three dimensional (3D) tissue engineered (TE) structures have been shown to better represent in vivo tissue morphology and biochemical pathways than monolayer cultures and are less ethically questionable than animal models. Therefore, an in vitro biomimetic musculoskeletal junction (MSKjct) is required as a more relevant pre-clinical testbed. This thesis describes the steps taken to co-culture 3D TE skeletal muscle and bone models as a material testbed and towards an in vitro MSKjct. [Continues.
The Jahn-Teller active fluoroperovskites : thermo- and magneto optical correlations as function of the -site
Chromium (II) fluoroperovskites are
strongly correlated Jahn-Teller active materials at low temperatures. In this
paper, we examine the role that the -site ion plays in this family of
fluoroperovskites using both experimental methods (XRD, optical absorption
spectroscopy and magnetic fields) and DFT simulations. Temperature-dependent
optical absorption experiments show that the spin-allowed transitions and
only merge completely for = Na at 2 K. Field-dependent optical
absorption measurements at 2 K show that the oscillating strength of the
spin-allowed transitions in increases with increasing
applied field. Direct magneto-structural correlations which suppress the
spin-flip transitions are observed for below its Ne\'el
temperature. In the spin-flip transitions vanish abruptly below
9 K revealing magneto-optical correlations not linked to crystal structure
changes. This suggests that as the long range ordering is reduced local JT
effects in the individual octahedra take control of the
observed behavior. Our results show clear deviation from the pattern found for
the isoelectronic system. The size of the -site cation
is shown to be central in dictating the physical properties and phase
transitions in , opening up the possibility of varying the
composition to create novel states of matter with tuneable properties
Agent based modelling : initial assessment for use on soil bioaccessibility
This report describes the testing of Agent Based Modelling implementations in three different software packages: Repast-simphony, NetLogo and Insight-maker. These software have been evaluated against their capability to simulate the exposure of people as agents moving across Arsenic contaminated soils. Two of the three tested software (Repast-simphony and NetLogo) are recommended for assessment on more complex problems. An outline work plan is presented for future work
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Comparison of on-line and off-line methods to quantify reactive oxygen species (ROS) in atmospheric aerosols
Atmospheric aerosol particle concentrations have been linked with a wide range of pulmonary and cardio-vascular diseases but the particle properties responsible for these negative health effects are largely unknown. It is often speculated that reactive oxygen species (ROS) present in atmospheric particles lead to oxidative stress in, and ultimately disease of, the human lung. The quantification of ROS is highly challenging because some ROS components such as radicals are highly reactive and therefore short-lived. Thus, fast analysis methods are likely advantageous over methods with a long delay between aerosol sampling and ROS analysis. We present for the first time a detailed comparison of conventional off-line and fast on-line methods to quantify ROS in organic aerosols. For this comparison a new and fast on-line instrument was built and characterized to quantify ROS in aerosol particles with high sensitivity and a limit of detection of 4 nmol H2O2 equivalents per m3 air. ROS concentrations are measured with a time resolution of approximately 15 min, which allows the tracking of fast changing atmospheric conditions. The comparison of the off-line and on-line method shows that, in oxidized organic model aerosol particles, the majority of ROS have a very short lifetime of a few minutes whereas a small fraction is stable for a day or longer. This indicates that off-line techniques, where there is often a delay of hours to days between particle collection and ROS analysis, may severely underestimate true ROS concentrations and that fast on-line techniques are necessary for a reliable ROS quantification in atmospheric aerosol particles and a meaningful correlation with health outcomes.This work was supported by the Natural Environment Research Council (NE/H52449X/1), the Velux Stiftung (Project 593) and an ERC starting grant (grant no. 279405).This is the accepted manuscript version. The final published version is available from Elsevier at http://www.sciencedirect.com/science/article/pii/S1352231014002787
Heavy metal bioavailability and bioaccessibility in soil
This chapter considers the use of a variety of approaches to assess either the bioavailability or the bioaccessibility of metals in soil. The bioavailability of metals from soils is considered with respect to a series of single-extraction methods, including the use of ethylenediaminetetraacetic acid (EDTA), acetic acid, diethylenetriaminepentaacetic acid (DTPA), ammonium nitrate, calcium chloride and sodium nitrate. Then, a procedure for the recovery of metals using a three-stage sequential extraction protocol is described. Two alternate approaches for assessing the environmental health risk to humans by undertaking in vitro gastrointestinal extraction (also known as the physiologically based extraction test, PBET) are considered. Finally, two acid digestion protocols that allow the pseudo-total metal content of samples to be assessed are provided. In all cases details of how the different approaches can be performed are provided, including the specific reagents required (and their preparation), details of the different extraction and acid digestion protocols to be followed and suitable analytical details to allow the measurement of metals by inductively coupled plasma mass spectrometry (ICP-MS) with/without a collision/reaction cell. A detailed Notes section provides experimental details to guide the reader through some of the practical aspects of the procedures. Finally, some experimental results are provided as evidence of the suitability of the approaches described including single-extraction data, using EDTA and acetic acid, for metals in CRM BCR 700. In addition, in vitro gastrointestinal extraction data are provided for metals in CRM SRM 1570A (spinach leaves). The influence of time on the intestinal fluid phase on the recovery of metals in CRM SRM 1570A (spinach leaves) and CRM INCT-TL-1 (tea leaves) is investigated, as well as the repeatability in terms of recovery of metals from soil over a 3-week period by in vitro gastrointestinal extraction
Energy-balance models of the solar corona
Solar coronal observations have shown that the corona has a highly complex structure which presumably owes its existence to the magnetic field. Models in thermal and hydrostatic equilibrium are here calculated in order to try and explain many of these observations. Coronal holes occur where open field lines reach out into space. The model of McWhirter, et al. (1975) for the inner corona in such a configuration is generalised to allow different types and magnitudes of heating as well as different area divergences and flows. It is found that hot, fast upflows cannot always exist in thermal equilibrium. The choice of boundary conditions can appreciably alter the results, and so different choices are compared. Most of the corona, especially in active regions, appears to consist of coronal loops. Subtle relations for energy balance models of such loops are found to exist between the physical parameters of a loop's length, base density, and heat input. No solution exists at coronal temperatures in certain cases, which may explain the observations of very cool loops. The effect of a loop's geometry and field line divergence on the structure is found. Results predicted from scaling laws are compared, and the uniqueness of the solution for a loop with a fixed mass is studied. The error in the predicted emission measure through assuming uniform pressure is shown to be considerable. The life-time of a loop can often be many days, suggesting the existence of a thermally stable state. A global stability analysis is performed, and it is found that a loop's stability may depend critically upon its length. Thermally isolated loops, which are the most unstable type, can be thermally stable, provided their pressure falls off sufficiently rapidly with height (due to hydrostatic equilibrium)
Out-of-hours primary percutaneous coronary intervention for ST-elevation myocardial infarction is not associated with excess mortality: a study of 3347 patients treated in an integrated cardiac network
OBJECTIVES: Timely delivery of primary percutaneous coronary intervention (PPCI) is the treatment of choice for ST-segment elevation myocardial infarction (STEMI). Optimum delivery of PPCI requires an integrated network of hospitals, following a multidisciplinary, consultant-led, protocol-driven approach. We investigated whether such a strategy was effective in providing equally effective in-hospital and long-term outcomes for STEMI patients treated by PPCI within normal working hours compared with those treated out-of-hours (OOHs). DESIGN: Observational study. SETTING: Large PPCI centre in London. PARTICIPANTS: 3347 STEMI patients were treated with PPCI between 2004 and 2012. The follow-up median was 3.3â
years (IQR: 1.2â4.6â
years). PRIMARY AND SECONDARY OUTCOME MEASURES: The primary endpoint was long-term major adverse cardiac events (MACE) with all-cause mortality a secondary endpoint. RESULTS: Of the 3347 STEMI patients, 1299 patients (38.8%) underwent PPCI during a weekday between 08:00 and 18:00 (routine-hours group) and 2048 (61.2%) underwent PPCI on a weekday between 18:00 and 08:00 or a weekend (OOHs group). There were no differences in baseline characteristics between the two groups with comparable door-to-balloon times (in-hours (IHs) 67.8â
min vs OOHs 69.6â
min, p=0.709), call-to-balloon times (IHs 116.63 vs OOHs 127.15â
min, p=0.60) and procedural success. In hospital mortality rates were comparable between the two groups (IHs 3.6% vs OOHs 3.2%) with timing of presentation not predictive of outcome (HR 1.25 (95% CI 0.74 to 2.11). Over the follow-up period there were no significant differences in rates of mortality (IHs 7.4% vs OFHs 7.2%, p=0.442) or MACE (IHs 15.4% vs OFHs 14.1%, p=0.192) between the two groups. After adjustment for confounding variables using multivariate analysis, timing of presentation was not an independent predictor of mortality (HR 1.04 95% CI 0.78 to 1.39). CONCLUSIONS: This large registry study demonstrates that the delivery of PPCI with a multidisciplinary, consultant-led, protocol-driven approach provides safe and effective treatment for patients regardless of the time of presentation
AmelHap: Leveraging drone whole-genome sequence data to create a honey bee HapMap
Honey bee, Apis mellifera, drones are typically haploid, developing from an unfertilized egg, inheriting only their queenâs alleles and none from the many drones she mated with. Thus the ordered combination or âphaseâ of alleles is known, making drones a valuable haplotype resource. We collated whole-genome sequence data for 1,407 drones, including 45 newly sequenced Scottish drones, collectively representing 19 countries, 8 subspecies and various hybrids. Following alignment to Amel_HAv3.1, variant calling and quality filtering, we retained 17.4âM high quality variants across 1,328 samples with a genotyping rate of 98.7%. We demonstrate the utility of this haplotype resource, AmelHap, for genotype imputation, returning >95% concordance when up to 61% of data is missing in haploids and up to 12% of data is missing in diploids. AmelHap will serve as a useful resource for the community for imputation from low-depth sequencing or SNP chip data, accurate phasing of diploids for association studies, and as a comprehensive reference panel for population genetic and evolutionary analyses.For the purpose of open access, the author has applied a Creative Commons Attribution (CC BY) licence to any Author Accepted Manuscript version arising from this submission. This work was supported by a grant from the CB Dennis British Beekeepersâ Research Trust awarded to MB and DW, and through strategic investment funding to the Roslin Institute from the Biotechnology and Biological Sciences Research Council (BBS/E/D/30002276). MP was supported by a Basque Government grant (IT1233-19)
Determination of the nature of the Cu coordination complexes formed in the presence of NO and NH3 within SSZ-13
Ammonia-selective catalytic reduction (NH3-SCR) using Cu zeolites is a well-established strategy for the abatement of NOx gases. Recent studies have demonstrated that Cu is particularly active when exchanged into the SSZ-13 zeolite, and its location in either the 6r or 8r renders it an excellent model system for fundamental studies. In this work, we examine the interaction of NH3-SCR relevant gases (NO and NH3) with the Cu2+ centers within the SSZ-13 structure, coupling powder diffraction (PD), X-ray absorption spectroscopy (XAFS), and density functional theory (DFT). This combined approach revealed that, upon calcination, cooling and gas exposure Cu ions tend to locate in the 8r window. After NO introduction, Cu-ions are seen to coordinate to two framework oxygens and one NO molecule, resulting in a bent Cu-nitrosyl complex with a Cu-N-O bond angle of similar to 150 degrees. Whilst Cu seems to be partially reduced/changed in coordination state, NO is partially oxidized. On exposure to NH3 while the PD data suggest the Cu2+ ion occupies a similar position, simulation and XAFS pointed toward the formation of a Jahn-Teller distorted hexaamine complex [Cu(NH3)(6)](2+) in the center of the cha cage. These results have important implications in terms of uptake and storage of these reactive gases and potentially for the mechanisms involved in the NH3-SCR process
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