713 research outputs found
Getting DNA twist rigidity from single molecule experiments
We use an elastic rod model with contact to study the extension versus
rotation diagrams of single supercoiled DNA molecules. We reproduce
quantitatively the supercoiling response of overtwisted DNA and, using
experimental data, we get an estimation of the effective supercoiling radius
and of the twist rigidity of B-DNA. We find that unlike the bending rigidity,
the twist rigidity of DNA seems to vary widely with the nature and
concentration of the salt buffer in which it is immerged
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Genetic Variation and Population Substructure in Outbred CD-1 Mice: Implications for Genome-Wide Association Studies
Outbred laboratory mouse populations are widely used in biomedical research. Since little is known about the degree of genetic variation present in these populations, they are not widely used for genetic studies. Commercially available outbred CD-1 mice are drawn from an extremely large breeding population that has accumulated many recombination events, which is desirable for genome-wide association studies. We therefore examined the degree of genome-wide variation within CD-1 mice to investigate their suitability for genetic studies. The CD-1 mouse genome displays patterns of linkage disequilibrium and heterogeneity similar to wild-caught mice. Population substructure and phenotypic differences were observed among CD-1 mice obtained from different breeding facilities. Differences in genetic variation among CD-1 mice from distinct facilities were similar to genetic differences detected between closely related human populations, consistent with a founder effect. This first large-scale genetic analysis of the outbred CD-1 mouse strain provides important considerations for the design and analysis of genetic studies in CD-1 mice.</p
Gauge vortex dynamics at finite mass of bosonic fields
The simple derivation of the string equation of motion adopted in the
nonrelativistic case is presented, paying the special attention to the effects
of finite masses of bosonic fields of an Abelian Higgs model. The role of the
finite mass effects in the evaluation of various topological characteristics of
the closed strings is discussed. The rate of the dissipationless helicity
change is calculated. It is demonstrated how the conservation of the sum of the
twisting and writhing numbers of the string is recovered despite the changing
helicity.Comment: considerably revised to include errata to journal versio
Relativistic quantum model of confinement and the current quark masses
We consider a relativistic quantum model of confined massive spinning quarks
and antiquarks which describes leading Regge trajectories of mesons. The quarks
are described by the Dirac equations and the gluon contribution is approximated
by the Nambu-Goto straight-line string. The string tension and the current
quark masses are the main parameters of the model. Additional parameters are
phenomenological constants which approximate nonstring short-range
contributions. Comparison of the measured meson masses with the model
predictions allows one to determine the current quark masses (in MeV) to be
. The chiral
model[23] makes it possible to estimate from here the - and -quark masses
to be ~ Mev and Mev.Comment: 15 pages, LATEX, 2 tables. (submitted to Phys.Rev.D
Custom stems for femoral deformity in patients less than 40 years of age: 70 hips followed for an average of 14 years
Background and purpose Femoral deformity associated with osteoarthritis is a challenge for both the surgeon and the implant. Many of the patients with these deformities are young. Standard implants can be difficult to fit into these femurs. We prospectively evaluated the outcome of custom uncemented femoral stems in young patients
A human cell atlas of fetal gene expression
The gene expression program underlying the specification of human cell types is of fundamental interest. We generated human cell atlases of gene expression and chromatin accessibility in fetal tissues. For gene expression, we applied three-level combinatorial indexing to >110 samples representing 15 organs, ultimately profiling ~4 million single cells. We leveraged the literature and other atlases to identify and annotate hundreds of cell types and subtypes, both within and across tissues. Our analyses focused on organ-specific specializations of broadly distributed cell types (such as blood, endothelial, and epithelial), sites of fetal erythropoiesis (which notably included the adrenal gland), and integration with mouse developmental atlases (such as conserved specification of blood cells). These data represent a rich resource for the exploration of in vivo human gene expression in diverse tissues and cell types
A stature-specific concept for uncemented, primary total hip arthroplasty: 10-year results in 155 patients using two stem shapes and modular necks
A discrete geometric approach for simulating the dynamics of thin viscous threads
We present a numerical model for the dynamics of thin viscous threads based
on a discrete, Lagrangian formulation of the smooth equations. The model makes
use of a condensed set of coordinates, called the centerline/spin
representation: the kinematical constraints linking the centerline's tangent to
the orientation of the material frame is used to eliminate two out of three
degrees of freedom associated with rotations. Based on a description of twist
inspired from discrete differential geometry and from variational principles,
we build a full-fledged discrete viscous thread model, which includes in
particular a discrete representation of the internal viscous stress.
Consistency of the discrete model with the classical, smooth equations is
established formally in the limit of a vanishing discretization length. The
discrete models lends itself naturally to numerical implementation. Our
numerical method is validated against reference solutions for steady coiling.
The method makes it possible to simulate the unsteady behavior of thin viscous
jets in a robust and efficient way, including the combined effects of inertia,
stretching, bending, twisting, large rotations and surface tension
Variables associated with nest survival of Golden-winged Warblers (Vermivora chrysoptera) among vegetation communities commonly used for nesting
Among shrubland- and young forest-nesting bird species in North America, Golden-winged Warblers (Vermivora chrysoptera) are one of the most rapidly declining partly because of limited nesting habitat. Creation and management of high quality vegetation communities used for nesting are needed to reduce declines. Thus, we examined whether common characteristics could be managed across much of the Golden-winged Warbler’s breeding range to increase daily survival rate (DSR) of nests. We monitored 388 nests on 62 sites throughout Minnesota, Wisconsin, New York, North Carolina, Pennsylvania, Tennessee, and West Virginia. We evaluated competing DSR models in spatial-temporal (dominant vegetation type, population segment, state, and year), intraseasonal (nest stage and time-within-season), and vegetation model suites. The best-supported DSR models among the three model suites suggested potential associations between daily survival rate of nests and state, time-within-season, percent grass and Rubus cover within 1 m of the nest, and distance to later successional forest edge. Overall, grass cover (negative association with DSR above 50%) and Rubus cover (DSR lowest at about 30%) within 1 m of the nest and distance to later successional forest edge (negative association with DSR) may represent common management targets across our states for increasing Golden-winged Warbler DSR, particularly in the Appalachian Mountains population segment. Context-specific adjustments to management strategies, such as in wetlands or areas of overlap with Blue-winged Warblers (Vermivora cyanoptera), may be necessary to increase DSR for Golden-winged Warblers
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