Basics of Bose-Einstein Condensation

The review is devoted to the elucidation of the basic problems arising in the theoretical investigation of systems with Bose-Einstein condensate. Understanding these challenging problems is necessary for the correct description of Bose-condensed systems. The principal problems considered in the review are as follows: (i) What is the relation between Bose-Einstein condensation and global gauge symmetry breaking? (ii) How to resolve the Hohenberg-Martin dilemma of conserving versus gapless theories? (iii) How to describe Bose-condensed systems in strong spatially random potentials? (iv) Whether thermodynamically anomalous fluctuations in Bose systems are admissible? (v) How to create nonground-state condensates? Detailed answers to these questions are given in the review. As examples of nonequilibrium condensates, three cases are described: coherent modes, turbulent superfluids, and heterophase fluids.Comment: Review articl

Global diversity, population stratification, and selection of human copy-number variation

In order to explore the diversity and selective signatures of duplication and deletion human copy-number variants (CNVs), we sequenced 236 individuals from 125 distinct human populations. We observed that duplications exhibit fundamentally different population genetic and selective signatures than deletions and are more likely to be stratified between human populations. Through reconstruction of the ancestral human genome, we identify megabases of DNA lost in different human lineages and pinpoint large duplications that introgressed from the extinct Denisova lineage now found at high frequency exclusively in Oceanic populations. We find that the proportion of CNV base pairs to single-nucleotide-variant base pairs is greater among non-Africans than it is among African populations, but we conclude that this difference is likely due to unique aspects of non-African population history as opposed to differences in CNV load

c-Cbl and Cbl-b Act Redundantly to Protect Osteoclasts from Apoptosis and to Displace HDAC6 from β-Tubulin, Stabilizing Microtubules and Podosomes

c-Cbl and Cbl-b are highly conserved adaptor proteins that participate in integrin signaling, regulating cytoskeletal organization, motility, and bone resorption. Deletion of both c-Cbl and Cbl-b in mice leads to embryonic lethality, indicating that the two proteins perform essential redundant functions. To examine the redundant actions of c-Cbl and Cbl-b in osteoclasts, we depleted c-Cbl in Cbl-b−/− osteoclasts by using a short hairpin RNA. Depleting both Cbl proteins disrupted both the podosome belt and the microtubule network and decreased bone-resorbing activity. Stabilizing the microtubules with paclitaxel or inhibiting histone deacetylase 6 (HDAC6), which destabilizes microtubules by deacetylating β-tubulin, protected both the microtubule network and the podosome belt. Examination of the mechanism involved demonstrated that the conserved four-helix bundle of c-Cbl's tyrosine kinase binding domain bound to β-tubulin, and both c-Cbl and Cbl-b displaced HDAC6. In addition to the effects on microtubules and the podosome belt, depleting both Cbls significantly increased the levels of the proapoptotic protein Bim and apoptosis relative to the levels induced by eliminating either protein alone. Thus, both c-Cbl and Cbl-b promote bone resorption via the stabilization of microtubules, allowing the formation of the podosome belt in osteoclasts, and by promoting osteoclast survival

Using remote sensing to estimate snow depth and snow water equivalence

Snow is an important source of water. However, data is often lacking on the water content (snow water equivalence - SWE), extent and depth of the seasonal snow cover. This paper presents results from a research project that determined the amount of water in a snow pack from snow depth and SWE in an areal manner using remote sensing and photogrammetry. Five field campaigns were undertaken within the Falls Creek Ski Resort, over 18 months, to establish a framework of positional points, collect snow data and acquire aerial imagery. A GPS survey was completed concurrent with the image capture of snow-covered terrain to obtain appropriate validation points of the snow surface and to coordinate photo control. Spectral reflectance measurements, supported by manual sampling of the snow surface, were collected in conjunction with snow surface GPS measurements. Digital photogrammetric methods were used to create digital elevation models (DEMs) of the snow surface and the terrain. The digital aerial photography was acquired with a ground sample distance of 8 cm. Derived DEM values have been consistently higher than GPS elevations (mean differences of 15 cm; standard deviation of 8 cm). Spectral reflectance signatures were used to infer the properties of snow, such as snow grain size. A prominent absorption feature (~1030 nm) of the snow reflectance was found to be highly correlated with grain size (R = 0.71, p <0.05) allowing for the estimation of SWE, at least for the snow surface. The potential of this methodology is to allow for the automated estimation of both snow depth and water content at a landscape scale

Health-related quality of life in multiple sclerosis: Effects of natalizumab

Objective: To report the relationship between disease activity and health-related quality of life (HRQoL) in relapsing multiple sclerosis, and the impact of natalizumab. Methods: HRQoL data were available from 2,113 multiple sclerosis patients in natalizumab clinical studies. In the Natalizumab Safety and Efficacy in Relapsing Remitting Multiple Sclerosis (AFFIRM) study, patients received natalizumab 300mg (n = 627) or placebo (n = 315); in the Safety and Efficacy of Natalizumab in Combination with Interferon Beta-1a in Patients with Relapsing Remitting Multiple Sclerosis (SENTINEL) study, patients received interferon beta-la (IFN-\u3b2-1a) plus natalizumab 300mg (n = 589), or IFN-\u3b2-1a plus placebo (n = 582). The Short Form-36 (SF-36) and a subject global assessment visual analog scale were administered at baseline and weeks 24, 52, and 104. Prespecified analyses included changes from baseline to week 104 in SF-36 and visual analog scale scores. Odds ratios for clinically meaningful improvement or worsening on the SF-36 Physical Component Summary (PCS) and Mental Component Summary were calculated. Results: Mean baseline SF-36 scores were significantly less than the general US population and correlated with Expanded Disability Status Scale scores, sustained disability progression, relapse number, and increased volume of brain magnetic resonance imaging lesions. Natalizumab significantly improved SF-36 PCS and Mental Component Summary scores at week 104 in AFFIRM. PCS changes were significantly improved by week 24 and at all subsequent time points. Natalizumab-treated patients in both studies were more likely to experience clinically important improvement and less likely to experience clinically important deterioration on the SF-36 PCS. The visual analog scale also showed significantly improved HRQoL with natalizumab. Interpretation: HRQoL was impaired in relapsing multiple sclerosis patients, correlated with severity of disease as measured by neurological ratings or magnetic resonance imaging, and improved significantly with natalizumab. \ua9 2007 American Neurological Association. Published by Wiley-Liss, Inc

The incidence and significance of anti-natalizumab antibodies - Results from AFFIRM and SENTINEL

Objective: To determine the incidence and clinical effects of antibodies that develop during treatment with natalizumab