Distribution and ecology of parent taxa of pollen lodged within the Latin American Pollen Database

The cornerstone of palaeoecological research, concerned with vegetation dynamics over the recent geological past, is a good understanding of the present-day ecology and distribution of the taxa. This is particularly necessary in areas of high floral diversity such as Latin America. Vegetation reconstructions, based on numerous pollen records, now exist with respect to all major vegetation associations from Latin America. With this ever-increasing number of sedimentary records becoming available, there is a need to collate this information and to provide information concerning ecology and distribution of the taxa concerned. The existing Latin American Pollen Database (LAPD) meets the first of these needs. Information concerning the ecology and distribution of the parent taxa responsible for producing the pollen, presently lodged within the LAPD, is the focus of this paper. The 'dictionary' describes the ecology and distribution of the parent taxa responsible for producing pollen identified within sedimentary records. These descriptions are based on a wide range of literature and extensive discussions with members of the palaeoecological community working in different parts of Latin America investigating a range of different vegetation types.Fil: Marchant, Robert. University of Amsterdam; Países BajosFil: Almeida, Lucía. Universidad Nacional Autónoma de México; MéxicoFil: Behling, Hermann. Center for Tropical Maritime Ecology; AlemaniaFil: Berrio, Juan Carlos. University of Amsterdam; Países BajosFil: Bush, Mark. West University Boulevard; Estados UnidosFil: Cleef, Antoine. University of Amsterdam; Países BajosFil: Duivenvoorden, Joost. University of Amsterdam; Países BajosFil: Kappelle, Maarten. Instituto Nacional de Biodiversidad (INBio); Costa RicaFil: De Oliveira, Paulo. Universidade de Sao Paulo; BrasilFil: de Oliveira, Ary Teixeira. Universidade Federal de Lavras; BrasilFil: Lozano García, Socorro. Universidad Nacional Autónoma de México; MéxicoFil: Hooghiemstra, Henry. University of Amsterdam; Países BajosFil: Ledru, Marie Pierre. Instituto de Geociencias; BrasilFil: Ludlow Wiechers, Beatriz. Universidad Nacional Autónoma de México; MéxicoFil: Markgraf, Vera. University of Colorado; Estados UnidosFil: Mancini, Maria Virginia. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Laboratorio de Paleoecología y Palinología; ArgentinaFil: Paez, Marta Mercedes. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Laboratorio de Paleoecología y Palinología; ArgentinaFil: Prieto, Aldo Raul. Consejo Nacional de Investigaciones Científicas y Técnicas. Centro Científico Tecnológico Conicet - Mar del Plata. Instituto de Investigaciones Marinas y Costeras. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Instituto de Investigaciones Marinas y Costeras; Argentina. Universidad Nacional de Mar del Plata. Facultad de Ciencias Exactas y Naturales. Laboratorio de Paleoecología y Palinología; ArgentinaFil: Rangel, Olando. Universidad Nacional de Colombia; ColombiaFil: Salgado Labouriau, Maria Lea. Universidade do Brasília; Brasi

The application of RNA sequencing for the diagnosis and genomic classification of pediatric acute lymphoblastic leukemia

Acute lymphoblastic leukemia (ALL) is the most common childhood malignancy, and implementation of risk-adapted therapy has been instrumental in the dramatic improvements in clinical outcomes. A key to risk-adapted therapies includes the identification of genomic features of individual tumors, including chromosome number (for hyper- and hypodiploidy) and gene fusions, notably ETV6-RUNX1, TCF3-PBX1, and BCR-ABL1 in B-cell ALL (B-ALL). RNA-sequencing (RNA-seq) of large ALL cohorts has expanded the number of recurrent gene fusions recognized as drivers in ALL, and identification of these new entities will contribute to refining ALL risk stratification. We used RNA-seq on 126 ALL patients from our clinical service to test the utility of including RNA-seq in standard-of-care diagnostic pipelines to detect gene rearrangements and IKZF1 deletions. RNA-seq identified 86% of rearrangements detected by standard-of-care diagnostics. KMT2A (MLL) rearrangements, although usually identified, were the most commonly missed by RNA-seq as a result of low expression. RNA-seq identified rearrangements that were not detected by standard-of-care testing in 9 patients. These were found in patients who were not classifiable using standard molecular assessment. We developed an approach to detect the most common IKZF1 deletion from RNA-seq data and validated this using an RQ-PCR assay. We applied an expression classifier to identify Philadelphia chromosome-like B-ALL patients. T-ALL proved a rich source of novel gene fusions, which have clinical implications or provide insights into disease biology. Our experience shows that RNA-seq can be implemented within an individual clinical service to enhance the current molecular diagnostic risk classification of ALL

Regulatory effects of TLR2 on megakaryocytic cell function

TLR2, a functional, inflammatory-related receptor, is known to be expressed on megakaryocytes and platelets and to lead to infection and immune-mediated activation of platelets; however, the role of this receptor in megakaryocytes is not understood. Using Meg-01 cells and mouse megakaryocytes, we found that NFκB, ERK-MAPK, and PI3K/Akt pathways, known downstream pathways of TLRs, are activated by Pam3CSK4, a TLR2-specific ligand. In addition, transcription factors associated with megakaryocyte maturation, GATA-1, NF-E2, and mammalian target of rapamycin (mTOR), are all increased in the presence of Pam3CSK4. The effect of Pam3CSK4 on megakaryocyte maturation was verified by the increase in DNA content and adhesion to extracellular matrix proteins by TLR2-dependent stimulation. In addition, TLR2 stimulation resulted in an increase in reactive oxygen species (ROS) production. Gene expression and protein levels of GP1b, CD41, MCP-1, COX2, NFκB1, and TLR2 were up-regulated in megakaryocytes after TLR2 stimulation through NFκB, PI3K/Akt, and ERK-MAPK pathways. Treatment of wild-type mice with Pam3CSK4 resulted in a return to normal platelet levels and an increase in megakaryocyte maturation, which did not occur in the TLR2−/− mice. Therefore, inflammation, through TLR2, can increase maturation and modulate the phenotype of megakaryocytes, contributing to the interrelationship between inflammation and hemostasis