The application of Laser Induced Breakdown Spectroscopy (LIBS) to the analysis of geological samples in simulated extra-terrestrial atmospheric environments

Laser induced breakdown spectroscopy (LIBS) is a technique that can determine the elemental composition and quantities of a sample by the spectral analysis of a laser induced plume. This study was undertaken to develop, characterise and assess the use of the LIBS technique on geological samples in different pressure and gaseous environments. The experimental range chosen was dictated by the planetary conditions on Titan and other extra-terrestrial bodies with the samples analysed chosen to complement a range of rock types. A LIBS system was developed, together with associated experimental apparatus able to acquire results in varying pressure and gaseous environments. The capability of LIBS to analyse weathered rock samples was investigated under various ambient conditions; pressures of 160x103 Pa to 0.4x10-3 Pa and ambient gaseous mixtures of air, nitrogen and methane. Particular attention was paid to temporal and power considerations under such regimes. As was expected, the chosen delay time to optimise the emission signals needed to be increased with increasing ambient pressure. At power values as low as 28.5 mJ/pulse (using a 6 ns pulse from a doubled Nd:YAG laser at 532 nm) a valid emission signal could be obtained. Increasing the laser power resulted in a reduction in the overall signal to noise ratio. It was observed that ambient methane quenches the optical emission signal due to non-radiative transitions. In spite of this, valid qualitative data are obtainable, even when emissions due to carbon transitions from both the sample and the gaseous environment, are present. Results are presented which support the premise that the LIBS technique can be used to investigate both the surface and depth compositions of geological samples under extra-terrestrial conditions.EThOS - Electronic Theses Online ServiceGBUnited Kingdo

Dissipation and mixing during the onset of stratification in a temperate lake, Windermere

Acoustic Doppler Current Profilers and chains of temperature sensors were used to observe the spring transition to stable stratification over a 55 day period in a temperate lake. Observations of the flow structure were complemented by measurements of dissipation, based on the Structure Function method, near the lake bed and in the upper part of the water column. During complete vertical mixing, wind-driven motions had horizontally isotropic velocities with roughly equal barotropic and baroclinic kinetic energy. Dissipation was closely correlated with the wind-speed cubed, indicating law of the wall scaling, and had peak values of ~1 x 10-5.5 W kg-1 at 10 m depth during maximum wind forcing (W~ 15 m s-1). As stratification developed, the flow evolved into a predominantly baroclinic regime dominated by the first mode internal seiche, with root mean square (rms) axial flow speeds of ~2-3 cm-1; ~ 2.5-times the transverse component. At 2.8 m above the bed, most of the dissipation occurred in a number of strong maxima coinciding with peaks of near-bed flow. In the pycnocline, dissipation was low most of the time, but with pronounced maxima (reaching ~1 x 10-5 W kg-1) closely related to the local velocity shear. The downward diffusive heat flux across the pycnocline over 27.5 days accounted for ~ 70% of the temperature rise in the water column below. Total lake kinetic energy increased by a factor of 3 between mixed and stratified regimes, in spite of reduced wind forcing, indicating less efficient damping in stable conditions

Entry receptors - The gateway to alphavirus infection

Alphaviruses are enveloped, insect-transmitted, positive-sense RNA viruses that infect humans and other animals and cause a range of clinical manifestations, including arthritis, musculoskeletal disease, meningitis, encephalitis, and death. Over the past four years, aided by CRISPR/Cas9-based genetic screening approaches, intensive research efforts have focused on identifying entry receptors for alphaviruses to better understand the basis for cellular and species tropism. Herein, we review approaches to alphavirus receptor identification and how these were used for discovery. The identification of new receptors advances our understanding of viral pathogenesis, tropism, and evolution and is expected to contribute to the development of novel strategies for prevention and treatment of alphavirus infection

Evolution of oceanic near surface stratification in response to an autumn storm

Understanding the processes that control the evolution of the ocean surface boundary layer (OSBL) is a prerequisite for obtaining accurate simulations of air-sea fluxes of heat and trace gases. Observations of the rate of dissipation of turbulent kinetic energy (ɛ), temperature, salinity, current structure and wave-field over a period of 9.5 days in the NE Atlantic during the Ocean Surface Mixing, Ocean Submesoscale Interaction Study (OSMOSIS), are presented. The focus of this study is a storm which passed over the observational area during this period. The profiles of ɛ in the OSBL are consistent with profiles from large eddy simulation (LES) of Langmuir turbulence. In the transition layer (TL), at the base of the OSBL, ɛ was found to vary periodically at the local inertial frequency. A simple bulk model of the OSBL and a parametrisation of shear driven turbulence in the TL are developed. The parametrisation of ɛ is based on assumptions about the momentum balance of the OSBL and shear across the TL. The predicted rate of deepening, heat budget and the inertial currents in the OSBL were in good agreement with the observations, as is the agreement between the observed value of ɛ and that predicted using the parametrisation. A previous study reported spikes of elevated dissipation related to enhanced wind-shear alignment at the base of the OSBL after this storm. The spikes in dissipation are not predicted by this new parametrisation, implying that they are not an important source of dissipation during the storm

Ocean nutrient pathways associated with passage of a storm

Storms that affect ocean surface layer dynamics and primary production are a frequent occurrence in the open North Atlantic Ocean. In this study we use an interdisciplinary dataset collected in the region to quantify nutrient supply by two pathways associated with a storm event: entrainment of nutrients during a period of high wind forcing and subsequent shear-spiking at the pycnocline due to interactions of storm generated inertial currents with wind. The post-storm increase in surface layer nitrate (by ~20 mmol m?2) was predominantly driven by the first pathway: nutrient intrusion during the storm. Alignment of post-storm inertial currents and surface wind stress caused shear instabilities at the ocean pycnocline, forming the second pathway for nutrient transport into the euphotic zone. During the alignment period, pulses of high turbulent nitrate flux through the pycnocline (up to 1 mmol m?2 day?1; approximately 25 times higher than the background flux) were detected. However, the impact of the post-storm supply was an order of magnitude lower than during the storm due to the short duration of the pulses. Cumulatively, the storm passage was equivalent to 2.5-5 % of the nitrate supplied by winter convection and had a significant effect compared to previously reported (sub)-mesoscale dynamics in the region. As storms occur frequently, they can form an important component in local nutrient budgets

The contribution of surface and submesoscale processes to turbulence in the open ocean surface boundary layer

The ocean surface boundary layer is a critical interface across which momentum, heat, and trace gases are exchanged between the oceans and atmosphere. Surface processes (winds, waves, and buoyancy forcing) are known to contribute significantly to fluxes within this layer. Recently, studies have suggested that submesoscale processes, which occur at small scales (0.1–10 km, hours to days) and therefore are not yet represented in most ocean models, may play critical roles in these turbulent exchanges. While observational support for such phenomena has been demonstrated in the vicinity of strong current systems and littoral regions, relatively few observations exist in the open‐ocean environment to warrant representation in Earth system models. We use novel observations and simulations to quantify the contributions of surface and submesoscale processes to turbulent kinetic energy (TKE) dissipation in the open‐ocean surface boundary layer. Our observations are derived from moorings in the North Atlantic, December 2012 to April 2013, and are complemented by atmospheric reanalysis. We develop a conceptual framework for dissipation rates due to surface and submesoscale processes. Using this framework and comparing with observed dissipation rates, we find that surface processes dominate TKE dissipation. A parameterization for symmetric instability is consistent with this result. We next employ simulations from an ocean front‐resolving model to reestablish that dissipation due to surface processes exceeds that of submesoscale processes by 1–2 orders of magnitude. Together, these results suggest submesoscale processes do not dramatically modify vertical TKE budgets, though such dynamics may be climatically important owing to their ability to remove energy from the ocean

CHILES: HI morphology and galaxy environment at z=0.12 and z=0.17

We present a study of 16 HI-detected galaxies found in 178 hours of observations from Epoch 1 of the COSMOS HI Large Extragalactic Survey (CHILES). We focus on two redshift ranges between 0.108 <= z <= 0.127 and 0.162 <= z <= 0.183 which are among the worst affected by radio frequency interference (RFI). While this represents only 10% of the total frequency coverage and 18% of the total expected time on source compared to what will be the full CHILES survey, we demonstrate that our data reduction pipeline recovers high quality data even in regions severely impacted by RFI. We report on our in-depth testing of an automated spectral line source finder to produce HI total intensity maps which we present side-by-side with significance maps to evaluate the reliability of the morphology recovered by the source finder. We recommend that this become a common place manner of presenting data from upcoming HI surveys of resolved objects. We use the COSMOS 20k group catalogue, and we extract filamentary structure using the topological DisPerSE algorithm to evaluate the \hi\ morphology in the context of both local and large-scale environments and we discuss the shortcomings of both methods. Many of the detections show disturbed HI morphologies suggesting they have undergone a recent interaction which is not evident from deep optical imaging alone. Overall, the sample showcases the broad range of ways in which galaxies interact with their environment. This is a first look at the population of galaxies and their local and large-scale environments observed in HI by CHILES at redshifts beyond the z=0.1 Universe.Comment: 23 pages, 12 figures, 1 interactive 3D figure, accepted to MNRA

Radio continuum observations of Class I protostellar disks in Taurus: constraining the greybody tail at centimetre wavelengths

We present deep 1.8 cm (16 GHz) radio continuum imaging of seven young stellar objects in the Taurus molecular cloud. These objects have previously been extensively studied in the sub-mm to NIR range and their SEDs modelled to provide reliable physical and geometrical parametres.We use this new data to constrain the properties of the long-wavelength tail of the greybody spectrum, which is expected to be dominated by emission from large dust grains in the protostellar disk. We find spectra consistent with the opacity indices expected for such a population, with an average opacity index of beta = 0.26+/-0.22 indicating grain growth within the disks. We use spectra fitted jointly to radio and sub-mm data to separate the contributions from thermal dust and radio emission at 1.8 cm and derive disk masses directly from the cm-wave dust contribution. We find that disk masses derived from these flux densities under assumptions consistent with the literature are systematically higher than those calculated from sub-mm data, and meet the criteria for giant planet formation in a number of cases.Comment: submitted MNRA

Technical Report Series on Global Modeling and Data Assimilation

During the post-launch Cal/Val Phase of SMAP there are two objectives for each science product team: 1) calibrate, verify, and improve the performance of the science algorithms, and 2) validate accuracies of the science data products as specified in the L1 science requirements according to the Cal/Val timeline. This report provides analysis and assessment of the SMAP Level 4 Carbon (L4_C) product specifically for the beta release. The beta-release version of the SMAP L4_C algorithms utilizes a terrestrial carbon flux model informed by SMAP soil moisture inputs along with optical remote sensing (e.g. MODIS) vegetation indices and other ancillary biophysical data to estimate global daily NEE and component carbon fluxes, particularly vegetation gross primary production (GPP) and ecosystem respiration (Reco). Other L4_C product elements include surface (<10 cm depth) soil organic carbon (SOC) stocks and associated environmental constraints to these processes, including soil moisture and landscape FT controls on GPP and Reco (Kimball et al. 2012). The L4_C product encapsulates SMAP carbon cycle science objectives by: 1) providing a direct link between terrestrial carbon fluxes and underlying freeze/thaw and soil moisture constraints to these processes, 2) documenting primary connections between terrestrial water, energy and carbon cycles, and 3) improving understanding of terrestrial carbon sink activity in northern ecosystems

Recent Widespread Tree Growth Decline Despite Increasing Atmospheric CO2

Background: The synergetic effects of recent rising atmospheric CO2 and temperature are expected to favor tree growth in boreal and temperate forests. However, recent dendrochronological studies have shown site-specific unprecedented growth enhancements or declines. The question of whether either of these trends is caused by changes in the atmosphere remains unanswered because dendrochronology alone has not been able to clarify the physiological basis of such trends. Methodology/Principal Findings: Here we combined standard dendrochronological methods with carbon isotopic analysis to investigate whether atmospheric changes enhanced water use efficiency (WUE) and growth of two deciduous and two coniferous tree species along a 9u latitudinal gradient across temperate and boreal forests in Ontario, Canada. Our results show that although trees have had around 53 % increases in WUE over the past century, growth decline (measured as a decrease in basal area increment – BAI) has been the prevalent response in recent decades irrespective of species identity and latitude. Since the 1950s, tree BAI was predominantly negatively correlated with warmer climates and/or positively correlated with precipitation, suggesting warming induced water stress. However, where growth declines were not explained by climate, WUE and BAI were linearly and positively correlated, showing that declines are not always attributable to warming induced stress and additional stressors may exist. Conclusions: Our results show an unexpected widespread tree growth decline in temperate and boreal forests due t