Movement of Bigmouth Sleeper, Gobiomorus dormitor, in the Río Cañas, Puerto Rico, revealed by radio telemetry, and a discussion of the species’ amphidromous characterization

Bigmouth Sleeper, Gobiomorus dormitor, are tropical fish native to rivers of Puerto Rico. They are popular sport fish targeted by local anglers. They are considered as diadromous, but this characterization is controversial. The displacement of Bigmouth Sleepers in the Río Cañas, Puerto Rico, was examined using radio telemetry. Twenty fish were radio-tagged and monitored from January to November 2008. Fish were in the Río Cañas 69%, 62%, and 59% of the time before (January-May), during (June-August), and after (September-November) the spawning season, respectively. Average detected linear home range (within the river) for all tracking periods was 2.3 km, but varied from less than 0.1 km to 8.1 km. Detected linear home range was not related to weight class or sex. They may remain in freshwater as juveniles and adults, only spending their larval stage in estuarine or marine habitats (i.e. amphidromous diadromy). However, they can complete their larval stage in freshwater but appear to make periodic migrations to the marine environment as adults, as suggested by this study. The best descriptor of Bigmouth Sleeper is that of a facultative amphidromous euryhaline species. Fishery and habitat management for this fish should take into consideration their general migratory behavior and their plasticity with respect to this life history strategy

Trout Responses to Stocking Rates and River Discharge within a Southeastern U.S. Hydropeaking Tailwater

Freshwater fish populations often exist in systems characterized by novel ecological processes resulting from human alteration. Salmonid populations embedded within coldwater sections of warmwater rivers are spatially constrained by habitat availability. Tailwater fish contend with fluctuating river discharges and density-dependent processes associated with fish stocking and exploitation. Salmonid populations sustained through stocking versus natural reproduction may respond differently to changes in hydrologic patterns (e.g., hydropeaking) as well as declines in fish abundance. We assessed differences between stocked (Rainbow Trout Oncorhynchus mykiss) and naturalized (Brown Trout Salmo trutta) trout populations in Greers Ferry tailwater, Arkansas, regarding (1) spatial and temporal patterns of mean length, electrofishing catch rates, and relative condition following reduced number of stocked Rainbow Trout and (2) evidence that hydrologic characteristics and fish stocking intensity influenced relative condition. A 56% reduction in Rainbow Trout stocking did not result in systemwide change in mean length or relative abundance for Rainbow Trout or Brown Trout over the 16-year study period. Hydrologic variability, where river discharge spanned both reduced and elevated levels, positively influenced condition of both Rainbow Trout and Brown Trout. Assessment of survival of stocked Rainbow Trout may aid in further refining the timing and amount of stocking needed to sustain the population at a desired abundance. Further, assessing the influence of stocking fewer but perhaps larger (in terms of mean length) fish to meet management goals may be warranted. The persistent differences in relative abundance among river sections can inform management actions directed at Brown Trout, including harvest regulations. Such regulations may aid in reaching desired management goals, including abundance and mean length targets not observed after reduced stocking

Tag Type and Location-Dependent Retention Impart Varied Levels of Bias on Mark–Recapture Parameter Estimates

Population parameter estimates from mark–recapture studies are dependent on individuals retaining marks or tags. Therefore, tag retention estimates are needed for different tag types and anatomical tagging locations. Few studies have empirically quantified the bias from tag retention on fish population parameters that are derived from mark–recapture studies. We examined differences in retention between T-bar anchor tags and PIT tags as well as among four anatomical locations for PIT tags in Brown Trout Salmo trutta in a tailwater fishery in Arkansas, USA. We also estimated the relative bias of tag type and PIT tag location on apparent survival estimates from Cormack–Jolly–-Seber models. Tag retention for the anchor tags was 15.1% lower than that for the PIT tags after 1 year and 46.1% lower after 4 years. Greater PIT tag retention resulted in less biased estimates of apparent survival for PIT tags (average −7.1%) than for anchor tags (average −37.8%). However, PIT tags that were placed in different anatomical locations had varying retention rates, so the degree of relative bias that was associated with their apparent survival estimates also varied. Inserting the PIT tags in the cheek or dorsal musculature provided the greatest retention for Brown Trout and may provide the least biased apparent survival estimates from future mark–recapture studies

Identification of a BRCA2-Specific modifier locus at 6p24 related to breast cancer risk

Common genetic variants contribute to the observed variation in breast cancer risk for BRCA2 mutation carriers; those known to date have all been found through population-based genome-wide association studies (GWAS). To comprehensively identify breast cancer risk modifying loci for BRCA2 mutation carriers, we conducted a deep replication of an ongoing GWAS discovery study. Using the ranked P-values of the breast cancer associations with the imputed genotype of 1.4 M SNPs, 19,029 SNPs were selected and designed for inclusion on a custom Illumina array that included a total of 211,155 SNPs as part of a multi-consortial project. DNA samples from 3,881 breast cancer affected and 4,330 unaffected BRCA2 mutation carriers from 47 studies belonging to the Consortium of Investigators of Modifiers of BRCA1/2 were genotyped and available for analysis. We replicated previously reported breast cancer susceptibility alleles in these BRCA2 mutation carriers and for several regions (including FGFR2, MAP3K1, CDKN2A/B, and PTHLH) identified SNPs that have stronger evidence of association than those previously published. We also identified a novel susceptibility allele at 6p24 that was inversely associated with risk in BRCA2 mutation carriers (rs9348512; per allele HR = 0.85, 95% CI 0.80-0.90, P = 3.9×10−8). This SNP was not associated with breast cancer risk either in the general population or in BRCA1 mutation carriers. The locus lies within a region containing TFAP2A, which encodes a transcriptional activation protein that interacts with several tumor suppressor genes. This report identifies the first breast cancer risk locus specific to a BRCA2 mutation background. This comprehensive update of novel and previously reported breast cancer susceptibility loci contributes to the establishment of a panel of SNPs that modify breast cancer risk in BRCA2 mutation carriers. This panel may have clinical utility for women with BRCA2 mutations weighing options for medical prevention of breast cancer

Methods for Assessing Fish Populations

Fisheries managers are likely to assess fish populations at some point during the fisheries management process. Managers that follow the fisheries management process (see Chapter 5) might find their knowledge base insufficient during the steps of problem identification or management action and must assess a population before appropriate actions can be taken. Managers will implement some type of assessment during the evaluation step as a means of measuring progress relative to objectives. Choosing how to assess a population is an important decision because managers strive to maximize their knowledge of a population while minimizing the time and money expended to gain that knowledge. A fish population is defined as a group of individuals of the same species or subspecies that are spatially, genetically, or demographically separated from other groups (Wells and Richmond 1995). A population will have a unique set of dynamics (e.g., recruitment, growth, and mortality) that influence its current and future status. The terms population assessment and stock assessment are used interchangeably by some fisheries managers. In general terms, a fish stock is a portion of a population, or a subpopulation. Stock assessment often refers to that portion of the fish population that is exploitable by a fishery, but we use the more inclusive population assessment throughout this chapter. Distinction is also made between a fish population and a sample of that population. Biologists almost never examine all the fish in a population, but rather base inferences on a sample of individuals from a population. How, where, and when those samples are drawn has a tremendous influence on the quality of data and validity of inferences

Occupancy and Status of the Strawberry Darter in the Strawberry River Drainage of Arkansas, USA

The Strawberry Darter Etheostoma fragi is endemic to the Strawberry River drainage in northcentral Arkansas, where its distribution and status have not been assessed since the mid-1990s. A status survey was conducted during the summers of 2015 and 2016. Sixty-four sites were sampled (32 each summer) within the Strawberry River drainage. Sites were surveyed 4 times each using a kick-seine. A total of 236 E. fragi were observed during the study. E. fragi were observed at 24 of 64 sites, including 15 tributary and 9 main stem sites. Strawberry Darters were observed at sites with a median (range) dissolved oxygen of 9.2 (5.7–11.9) mg/L, median stream flow of 0.2 (0.1–0.7) m/s, median pH of 8.1 (6.7–9.4), median water temperature of 22.0 (13.9–29.3) °C, and median depth of 0.2 (0.1–0.7) m. Presence/absence data were analyzed with occupancy modeling, which estimates informed occupancy rate (hereafter, occupancy) and probability of detection. The drainage-wide occupancy (± SE) was 0.41 ± 0.06 and the probability of detection was 0.56 ± 0.06. A reach covariate model fit our data the best (209.81 AICc). This model estimated an occupancy of 0.54 ± 0.09 and a probability of detection of 0.64 ± 0.06 in the upper reach, an occupancy of 0.20 ± 0.11 and a probability of detection of 0.51 ± 0.17 in the middle reach, and an occupancy of 0.39 ± 0.31 and a probability of detection of 0.19 ± 0.16 in the lower reach The drainage-wide occupancy was lower (0.32 difference) than an occupancy based on historical data (0.73 ± 0.11). These results suggest a decline in the status of E. fragi and justify conservation measures to preserve this species

A Comparison of Shoreline Seines with Fyke Nets for Sampling Littoral Fish Communities in Floodplain Lakes

We compared shoreline seines with fyke nets in terms of their ability to sample fish species in the littoral zone of 22 floodplain lakes of the White River, Arkansas. Lakes ranged in size from less than 0.5 to 51.0 ha. Most contained large amounts of coarse woody debris within the littoral zone, thus making seining in shallow areas difficult. We sampled large lakes (greater than 2 ha) using three fyke nets; small lakes (less than 2 ha) were sampled using two fyke nets. Fyke nets were set for 24 h. Large lakes were sampled with an average of 11 seine hauls/ lake and small lakes were sampled with an average of 3 seine hauls/lake, but exact shoreline seining effort varied among lakes depending on the amount of open shoreline. Fyke nets collected more fish and produced greater species richness and diversity measures than did seining. Species evenness was similar for the two gear types. Two species were unique to seine samples, whereas 13 species and 3 families were unique to fyke-net samples. Although fyke nets collected more fish and more species than did shoreline seines, neither gear collected all the species present in the littoral zone of floodplain lakes. These results confirm the need for a multiple-gear approach to fully characterize the littoral fish assemblages in floodplain lakes. © Copyright by the American Fisheries Society 2007

Adult and Juvenile Paddlefish in Floodplain Lakes Along the Lower White River, Arkansas

Eleven floodplain lakes in the lower White River, Arkansas were sampled using a boat electrofisher and gill nets during periods of river connection (AprilMay 2004) and disconnection (JuneJuly 2004 and 2005). Environmental characteristics, including water quality and lake morphometrics were concurrently measured in each lake. Average measures of connectivity were calculated for the preceding 5-year period. Of the 11 lakes sampled, 7 lakes contained paddlefish. A total of 44 paddlefish were observed during the study, but only 1 was observed during the period of river connection. Eye-fork lengths ranged from 3481040 mm (n = 38). Paddlefish ranged in age from 319 years (n = 27). Paddlefish were more likely to be found in long narrow floodplain lakes that connected to the river early in the year. Paddlefish catch per unit effort increased as lake surface area, dissolved oxygen level, and variability in the start date of connection increased. Our research indicated that both juvenile and adult paddlefish use White River floodplain lakes, despite the risk of being isolated in lakes for long periods or being prevented from accessing riverine spawning habitat. © 2009, The Society of Wetland Scientists

Identification of a BRCA2-specific modifier locus at 6p24 related to breast cancer risk.

Common genetic variants contribute to the observed variation in breast cancer risk for BRCA2 mutation carriers; those known to date have all been found through population-based genome-wide association studies (GWAS). To comprehensively identify breast cancer risk modifying loci for BRCA2 mutation carriers, we conducted a deep replication of an ongoing GWAS discovery study. Using the ranked P-values of the breast cancer associations with the imputed genotype of 1.4 M SNPs, 19,029 SNPs were selected and designed for inclusion on a custom Illumina array that included a total of 211,155 SNPs as part of a multi-consortial project. DNA samples from 3,881 breast cancer affected and 4,330 unaffected BRCA2 mutation carriers from 47 studies belonging to the Consortium of Investigators of Modifiers of BRCA1/2 were genotyped and available for analysis. We replicated previously reported breast cancer susceptibility alleles in these BRCA2 mutation carriers and for several regions (including FGFR2, MAP3K1, CDKN2A/B, and PTHLH) identified SNPs that have stronger evidence of association than those previously published. We also identified a novel susceptibility allele at 6p24 that was inversely associated with risk in BRCA2 mutation carriers (rs9348512; per allele HR = 0.85, 95% CI 0.80–0.90, P = 3.961028). This SNP was not associated with breast cancer risk either in the general population or in BRCA1 mutation carriers. The locus lies within a region containing TFAP2A, which encodes a transcriptional activation protein that interacts with several tumor suppressor genes. This report identifies the first breast cancer risk locus specific to a BRCA2 mutation background. This comprehensive update of novel and previously reported breast cancer susceptibility loci contributes to the establishment of a panel of SNPs that modify breast cancer risk in BRCA2 mutation carriers. This panel may have clinical utility for women with BRCA2 mutations weighing options for medical prevention of breast cancer