Evaluation of a 3-D rockfall module within a forest patch model

Many slopes in the Alps are prone to rockfall and forests play a vital role in protecting objects such as (rail) roads and infrastructure against rockfall. Decision support tools are required to assess rockfall processes and to quantify the rockfall protection effect of forest stands. This paper presents results of an iterative sequence of tests and improvements of a coupled rockfall and forest dynamics model with focus on the rockfall module. As evaluation data a real-size rockfall experiment in the French Alps and two 2-D rockfall trajectories from Austria and Switzerland were used. Modification of the rebound algorithm and the inclusion of an algorithm accounting for the sudden halt of falling rocks due to surface roughness greatly improved the correspondence between simulated and observed key rockfall variables like run-out distances, rebound heights and jump lengths for the real-size rockfall experiment. Moreover, the observed jump lengths and run-out distances of the 2-D trajectories were well within the stochastic range of variation yielded by the simulations. Based on evaluation results it is concluded that the rockfall model can be employed to assess the protective effect of forest vegetation

Genetic analysis of grape berries and raisins using microsatellite markers

Microsatellite markers have been used recently for the identification and pedigree analysis of grapevines with leaves and wood as sources of vine DNA. To identify grapes after harvest and their products, we applied DNA extraction protocols to grape berries and raisins. DNA was obtained from both sources, but that of raisins was highly degraded. The suitability of DNA for PCR amplification of single genetic loci was shown by amplification of 11 microsatellite markers. 18 commercially available table grape samples were genotyped, and 11 (61 %) matched the corresponding genetic profile in our reference database. Four samples were shown to be defined incorrectly and 4 samples did not match any of the generic profiles present in the database. The investigated raisins were found to be cv. Sultanina. The results demonstrate that DNA-based cultivar identification methods can be applied to harvested grapes and raisins

Simulation tools for decision support to adaptive forest management in Europe

Peer reviewe

Genomic signatures of local adaptation reveal source-sink dynamics in a high gene flow fish species

Understanding source-sink dynamics is important for conservation management, particularly when climatic events alter species' distributions. Following a 2011 'marine heatwave' in Western Australia, we observed high recruitment of the endemic fisheries target species Choerodon rubescens, towards the cooler (southern) end of its distribution. Here, we use a genome wide set of 14 559 single-nucleotide polymorphisms (SNPs) to identify the likely source population for this recruitment event. Most loci (76%) showed low genetic divergence across the species' range, indicating high levels of gene flow and confirming previous findings using neutral microsatellite markers. However, a small proportion of loci showed strong patterns of differentiation and exhibited patterns of population structure consistent with local adaptation. Clustering analyses based on these outlier loci indicated that recruits at the southern end of C. rubescens' range originated 400 km to the north, at the centre of the species' range, where average temperatures are up to 3 °C warmer. Survival of these recruits may be low because they carry alleles adapted to an environment different to the one they now reside in, but their survival is key to establishing locally adapted populations at and beyond the range edge as water temperatures increase with climate change

Biodiversity of Mineral Nutrient and Trace Element Accumulation in Arabidopsis thaliana

In order to grow on soils that vary widely in chemical composition, plants have evolved mechanisms for regulating the elemental composition of their tissues to balance the mineral nutrient and trace element bioavailability in the soil with the requirements of the plant for growth and development. The biodiversity that exists within a species can be utilized to investigate how regulatory mechanisms of individual elements interact and to identify genes important for these processes. We analyzed the elemental composition (ionome) of a set of 96 wild accessions of the genetic model plant Arabidopsis thaliana grown in hydroponic culture and soil using inductively coupled plasma mass spectrometry (ICP-MS). The concentrations of 17–19 elements were analyzed in roots and leaves from plants grown hydroponically, and leaves and seeds from plants grown in artificial soil. Significant genetic effects were detected for almost every element analyzed. We observed very few correlations between the elemental composition of the leaves and either the roots or seeds. There were many pairs of elements that were significantly correlated with each other within a tissue, but almost none of these pairs were consistently correlated across tissues and growth conditions, a phenomenon observed in several previous studies. These results suggest that the ionome of a plant tissue is variable, yet tightly controlled by genes and gene×environment interactions. The dataset provides a valuable resource for mapping studies to identify genes regulating elemental accumulation. All of the ionomic data is available at www.ionomicshub.org