The effect of temporally variable environmental stimuli and group size on emergence behavior

How animals trade-off food availability and predation threats is a strong determinant of animal activity and behavior; however, the majority of work on this topic has been on individual animals, despite the modulating effect the presence of conspecifics can have on both foraging and predation risk. Although these environmental factors (food and predation threat) vary spatially within habitats, they also vary temporally, and in marine habitats, this can be determined by not only the diel cycle but also the tidal cycle. Humbug damselfish, Dascyllus aruanus, live in small groups of unrelated individuals within and around branching coral heads, which they collectively withdraw into to escape a predation threat. In this study, we measured the proportion of individuals in the colony that were outside the coral head before and after they were scared by a fright stimulus and compared the responses at high tide (HT) and low tide (LT). We found that a greater proportion of the shoal emerged after the fright stimulus at HT and in larger groups than at LT or in smaller groups. We also quantified the pattern of emergence over time and discovered the rate of emergence was faster in larger shoals as time progressed. We show that shoals of fish change their behavioral response to a predation threat in accordance with the tide, exemplifying how temporally variable environmental factors can shape group movement decisions

Genome-Wide Association Study in BRCA1 Mutation Carriers Identifies Novel Loci Associated with Breast and Ovarian Cancer Risk

BRCA1-associated breast and ovarian cancer risks can be modified by common genetic variants. To identify further cancer risk-modifying loci, we performed a multi-stage GWAS of 11,705 BRCA1 carriers (of whom 5,920 were diagnosed with breast and 1,839 were diagnosed with ovarian cancer), with a further replication in an additional sample of 2,646 BRCA1 carriers. We identified a novel breast cancer risk modifier locus at 1q32 for BRCA1 carriers (rs2290854, P = 2.7×10-8, HR = 1.14, 95% CI: 1.09-1.20). In addition, we identified two novel ovarian cancer risk modifier loci: 17q21.31 (rs17631303, P = 1.4×10-8, HR = 1.27, 95% CI: 1.17-1.38) and 4q32.3 (rs4691139, P = 3.4×10-8, HR = 1.20, 95% CI: 1.17-1.38). The 4q32.3 locus was not associated with ovarian cancer risk in the general population or BRCA2 carriers, suggesting a BRCA1-specific associat

Fifteen Genetic Loci Associated with the Electrocardiographic P Wave

The P wave on an ECG is a measure of atrial electric function, and its characteristics may serve as predictors for atrial arrhythmias. Increased mean P-wave duration and P-wave terminal force traditionally have been used as markers for left atrial enlargement, and both have been associated with increased risk of atrial fibrillation. Here, we explore the genetic basis of P-wave morphology through meta-analysis of genome-wide association study results for P-wave duration and P-wave terminal force from 12 cohort studies. Methods and Results - We included 44 456 individuals, of which 6778 (16%) were of African ancestry. Genotyping, imputation, and genome-wide association study were performed at each study site. Summary-level results were meta-analyzed centrally using inverse-variance weighting. In meta-analyses of P-wave duration, we identified 6 significant (P<5×10-8) novel loci and replicated a prior association with SCN10A. We identified 3 loci at SCN5A, TBX5, and CAV1/CAV2 that were jointly associated with the PR interval, PR segment, and P-wave duration. We identified 6 novel loci in meta-analysis of P-wave terminal force. Four of the identified genetic loci were significantly associated with gene expression in 329 left atrial samples. Finally, we observed that some of the loci associated with the P wave were linked to overall atrial conduction, whereas others identified distinct phases of atrial conduction. Conclusions - We have identified 6 novel genetic loci associated with P-wave duration and 6 novel loci associated with P-wave terminal force. Future studies of these loci may aid in identifying new targets for drugs that may modify atrial conduction or treat atrial arrhythmias

The GEOTRACES Intermediate Data Product 2014

The GEOTRACES Intermediate Data Product 2014 (IDP2014) is the first publicly available data product of the international GEOTRACES programme, and contains data measured and quality controlled before the end of 2013. It consists of two parts: (1) a compilation of digital data for more than 200 trace elements and isotopes (TEIs) as well as classical hydrographic parameters, and (2) the eGEOTRACES Electronic Atlas providing a strongly inter-linked on-line atlas including more than 300 section plots and 90 animated 3D scenes. The IDP2014 covers the Atlantic, Arctic, and Indian oceans, exhibiting highest data density in the Atlantic. The TEI data in the IDP2014 are quality controlled by careful assessment of intercalibration results and multi-laboratory data comparisons at cross-over stations. The digital data are provided in several formats, including ASCII spreadsheet, Excel spreadsheet, netCDF, and Ocean Data View collection. In addition to the actual data values the IDP2014 also contains data quality flags and 1-? data error values where available. Quality flags and error values are useful for data filtering. Metadata about data originators, analytical methods and original publications related to the data are linked to the data in an easily accessible way. The eGEOTRACES Electronic Atlas is the visual representation of the IDP2014 data providing section plots and a new kind of animated 3D scenes. The basin-wide 3D scenes allow for viewing of data from many cruises at the same time, thereby providing quick overviews of large-scale tracer distributions. In addition, the 3D scenes provide geographical and bathymetric context that is crucial for the interpretation and assessment of observed tracer plumes, as well as for making inferences about controlling processes

A case-only study to identify genetic modifiers of breast cancer risk for BRCA1/BRCA2 mutation carriers

Breast cancer (BC) risk for BRCA1 and BRCA2 mutation carriers varies by genetic and familial factors. About 50 common variants have been shown to modify BC risk for mutation carriers. All but three, were identified in general population studies. Other mutation carrier-specific susceptibility variants may exist but studies of mutation carriers have so far been underpowered. We conduct a novel case-only genome-wide association study comparing genotype frequencies between 60,212 general population BC cases and 13,007 cases with BRCA1 or BRCA2 mutations. We identify robust novel associations for 2 variants with BC for BRCA1 and 3 for BRCA2 mutation carriers, P < 10−8, at 5 loci, which are not associated with risk in the general population. They include rs60882887 at 11p11.2 where MADD, SP11 and EIF1, genes previously implicated in BC biology, are predicted as potential targets. These findings will contribute towards customising BC polygenic risk scores for BRCA1 and BRCA2 mutation carriers

Rapid increase of observed \DIC\ and pCO2 in the surface waters of the North Sea in the 2001-2011 decade ascribed to climate change superimposed by biological processes

Cycles of metals and carbon in the oceans - A tribute to the work stimulated by Hein de BaarInternational audienceAbstract The \CO2\ system in the North Sea over the 2001-2011 decade was investigated using four comprehensive basin-wide datasets covering the late summer periods of 2001, 2005, 2008 and 2011. We find that rises in surface water \DIC\ and pCO2 exceeded concurrent rises in atmospheric pCO2, which we attribute primarily to biological activity in late summer. After accounting for this biological signal, the observed ocean acidification occurs at a rate that is consistent with concurrent atmospheric and open ocean \CO2\ increases over the 2001-2011 decade. Nevertheless, we do find a consistent reduction in \CO2\ undersaturation in the \NNS\ and an increase in \CO2\ supersaturation in the SNS. We propose that the synergistic effects of increasing atmospheric pCO2 and subsequent decrease in seawater buffering capacity, together with rising sea surface temperatures in the future oceans, may reduce the strength of the North Sea as a \CO2\ sink. Such a reduction would diminish the efficiency of this region as a continental shelf pump with respect to uptake of \CO2\ by the sea. Ultimately this would constitute a positive feedback mechanism, i.e. enhancing the airborne fraction of anthropogenic \CO2\ and thus the net rate of increase of atmospheric pCO2 and subsequent global climate change